AT1G10657

Plant protein 1589 of unknown function (A_thal_3526)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014237
Physical Location & Seq
Forward (+)
3530353 .. 3532017
1665 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G10657.1

Sequence Viewer

Length: 378 bp
ATGTGTACTCATGCTGATGAATCACAACACAACAATCTCCCTTGTCTCCATTGCCAACCACATTCTTACATTCGCATGGTTCAACATATGATAGAGAGATGCATTCTACTCCGTATGACGCGGGACGAATGCGTCAAGGCGTTAGACCACCACGCAAGCATTCTACCACTCGTTACACTCACTGTTTTCAGCTATATATTAGGCTTTGCAAGTGTGCTACAAAAAAAATTACATGATATTTTTCCCCCCCCCGCAGTTTGGAGAGGACTTCAAAGAGAAAACAAGGACTTCTTTGAAACGTATGGGCATTTCGTCTCTCCTAGGCCCTTCTTAAGCGGATATGTTCGAAGATCGCCGAGGTTTGCGAAAAGGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
A_thal_3526

Protein Analysis

125

Amino Acids

14.66

Weight (kDa)

9.33

Isoelectric Point (pI)

61.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
A_thal_3526 PF09713 27 - 63 5.4e-13 Plant protein 1589 of unknown function (A_thal_3526)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10657 AT1G10657 AT1G10657 AT1G10657
fragaria_vesca FvH4_4g32920
malus_domestica MD13G1095000.v1.1 MD16G1096100.v1.1
prunus_persica Prupe.1G250400_v2.0.a1
pyrus_communis pycom13g08280
rosa_chinensis RchiOBHm_Chr4g0441951
rosa_multiflora Rmu_sc0002501.1_g000031 Rmu_sc0011990.1_g000009
rosa_roxburghii Rroxscaffold_5G00382780
rosa_rugosa Rorug04G0337100 Rorug04G0337200
rosa_samantha Rh4AG389100
rosa_wichuraiana Rw4G033600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 131
AccII CGCG 1 cut(s) 121
AciI CCGC 3 cut(s) 121, 252, 336
AfaI GTAC 1 cut(s) 7
AfiI CCNNNNNNNGG 1 cut(s) 258
AflII CTTAAG 1 cut(s) 331
AgsI TTSAA 3 cut(s) 83, 272, 296
AluBI AGCT 1 cut(s) 192
AluI AGCT 1 cut(s) 192
Alw26I GTCTC 2 cut(s) 50, 319
AoxI GGCC 1 cut(s) 323
AspA2I CCTAGG 1 cut(s) 320
AspS9I GGNCC 1 cut(s) 324
AsuII TTCGAA 1 cut(s) 346
AvrII CCTAGG 1 cut(s) 320
BcoDI GTCTC 2 cut(s) 50, 319
BfaI CTAG 1 cut(s) 321
BfrI CTTAAG 1 cut(s) 331
BlnI CCTAGG 1 cut(s) 320
BmgT120I GGNCC 1 cut(s) 324
BmsI GCATC 1 cut(s) 89
Bpu14I TTCGAA 1 cut(s) 346
BsaJI CCNNGG 2 cut(s) 320, 356
Bsc4I CCNNNNNNNGG 1 cut(s) 258
Bse3DI GCAATG 1 cut(s) 49
BseDI CCNNGG 2 cut(s) 320, 356
BseLI CCNNNNNNNGG 1 cut(s) 258
BseMI GCAATG 1 cut(s) 49
Bsh1236I CGCG 1 cut(s) 121
BshFI GGCC 1 cut(s) 325
BslFI GGGAC 1 cut(s) 137
BslI CCNNNNNNNGG 1 cut(s) 258
BsmAI GTCTC 2 cut(s) 50, 319
BsmBI CGTCTC 1 cut(s) 319
BsmFI GGGAC 1 cut(s) 137
BsmI GAATGC 3 cut(s) 102, 134, 159
BsnI GGCC 1 cut(s) 325
Bsp119I TTCGAA 1 cut(s) 346
Bsp143I GATC 1 cut(s) 350
BspACI CCGC 3 cut(s) 121, 252, 336
BspANI GGCC 1 cut(s) 325
BspFNI CGCG 1 cut(s) 121
BspT104I TTCGAA 1 cut(s) 346
BspTI CTTAAG 1 cut(s) 331
BsrDI GCAATG 1 cut(s) 49
BssECI CCNNGG 2 cut(s) 320, 356
BssMI GATC 1 cut(s) 350
BssT1I CCWWGG 1 cut(s) 320
Bst4CI ACNGT 1 cut(s) 184
BstAFI CTTAAG 1 cut(s) 331
BstBI TTCGAA 1 cut(s) 346
BstC8I GCNNGC 1 cut(s) 157
BstFNI CGCG 1 cut(s) 121
BstKTI GATC 1 cut(s) 353
BstMAI GTCTC 2 cut(s) 50, 319
BstMBI GATC 1 cut(s) 350
BstUI CGCG 1 cut(s) 121
BsuRI GGCC 1 cut(s) 325
BtsIMutI CAGTG 1 cut(s) 180
Cac8I GCNNGC 1 cut(s) 157
Cfr13I GGNCC 1 cut(s) 324
CseI GACGC 2 cut(s) 121, 127
Csp6I GTAC 1 cut(s) 6
CviAII CATG 3 cut(s) 11, 76, 233
CviJI RGCY 3 cut(s) 192, 204, 325
CviKI_1 RGCY 3 cut(s) 192, 204, 325
CviQI GTAC 1 cut(s) 6
DpnI GATC 1 cut(s) 352
DpnII GATC 1 cut(s) 350
DrdI GACNNNNNNGTC 1 cut(s) 131
DseDI GACNNNNNNGTC 1 cut(s) 131
Eco130I CCWWGG 1 cut(s) 320
EcoO109I RGGNCCY 1 cut(s) 324
EcoT14I CCWWGG 1 cut(s) 320
EcoT22I ATGCAT 1 cut(s) 104
ErhI CCWWGG 1 cut(s) 320
Esp3I CGTCTC 1 cut(s) 319
FaeI CATG 3 cut(s) 14, 79, 236
FalI AAGNNNNNCTT 2 cut(s) 275, 307
FaqI GGGAC 1 cut(s) 137
FatI CATG 3 cut(s) 10, 75, 232
FauI CCCGC 2 cut(s) 114, 259
FauNDI CATATG 1 cut(s) 87
FspBI CTAG 1 cut(s) 321
HaeIII GGCC 1 cut(s) 325
HgaI GACGC 2 cut(s) 121, 127
Hin1II CATG 3 cut(s) 14, 79, 236
HinfI GANTC 1 cut(s) 20
Hpy166II GTNNAC 1 cut(s) 6
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 1 cut(s) 337
HpyCH4III ACNGT 1 cut(s) 184
HpyCH4IV ACGT 1 cut(s) 299
HpyCH4V TGCA 2 cut(s) 102, 209
HpySE526I ACGT 1 cut(s) 299
Hsp92II CATG 3 cut(s) 14, 79, 236
Kzo9I GATC 1 cut(s) 350
LweI GCATC 1 cut(s) 89
MaeI CTAG 1 cut(s) 321
MaeII ACGT 1 cut(s) 299
MaeIII GTNAC 1 cut(s) 172
MalI GATC 1 cut(s) 352
MboI GATC 1 cut(s) 350
MboII GAAGA 1 cut(s) 360
MluCI AATT 1 cut(s) 227
MnlI CCTC 2 cut(s) 257, 351
Mph1103I ATGCAT 1 cut(s) 104
MseI TTAA 1 cut(s) 332
MslI CAYNNNNRTG 2 cut(s) 15, 74
MspCI CTTAAG 1 cut(s) 331
Mva1269I GAATGC 3 cut(s) 102, 134, 159
MvnI CGCG 1 cut(s) 121
NdeI CATATG 1 cut(s) 87
NdeII GATC 1 cut(s) 350
NlaIII CATG 3 cut(s) 14, 79, 236
NsiI ATGCAT 1 cut(s) 104
NspV TTCGAA 1 cut(s) 346
PctI GAATGC 3 cut(s) 102, 134, 159
PfeI GAWTC 1 cut(s) 20
PspPI GGNCC 1 cut(s) 324
RsaI GTAC 1 cut(s) 7
RsaNI GTAC 1 cut(s) 6
RseI CAYNNNNRTG 2 cut(s) 15, 74
SaqAI TTAA 1 cut(s) 332
Sau3AI GATC 1 cut(s) 350
Sau96I GGNCC 1 cut(s) 324
SetI ASST 3 cut(s) 194, 302, 362
SfaNI GCATC 1 cut(s) 89
SfuI TTCGAA 1 cut(s) 346
SmiMI CAYNNNNRTG 2 cut(s) 15, 74
SmlI CTYRAG 1 cut(s) 331
SmoI CTYRAG 1 cut(s) 331
Sse9I AATT 1 cut(s) 227
SsiI CCGC 3 cut(s) 121, 252, 336
SspMI CTAG 1 cut(s) 321
StyI CCWWGG 1 cut(s) 320
TaaI ACNGT 1 cut(s) 184
TaiI ACGT 1 cut(s) 302
TaqI TCGA 1 cut(s) 346
TasI AATT 1 cut(s) 227
TatI WGTACW 1 cut(s) 5
TfiI GAWTC 1 cut(s) 20
Tru1I TTAA 1 cut(s) 332
Tru9I TTAA 1 cut(s) 332
TscAI CASTG 1 cut(s) 187
TspDTI ATGAA 1 cut(s) 33
TspGWI ACGGA 1 cut(s) 101
TspRI CASTG 1 cut(s) 187
Vha464I CTTAAG 1 cut(s) 331
XmaJI CCTAGG 1 cut(s) 320
XspI CTAG 1 cut(s) 321
Zsp2I ATGCAT 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.