FvH4_4g32920

Plant protein 1589 of unknown function (A_thal_3526)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0014237
Physical Location & Seq
Reverse (-)
31345461 .. 31346699
1239 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g32920.t1

Sequence Viewer

Length: 309 bp
ATGCATCAGCATAACCATCTCCTAGGGCGTCCATGCTTGCATTGCCACCCACACACTTACATTAGAATGGTTCAACATCTTATTGAGAAATGCTTACTCTTTCACATGAGTCGTGACCAGTGCATAAACGCCTTAGCACGGCATGCAAACATTACACCACTCATCACACTTACAGTTTGGAGAGAGCTACAAAAAGAGAATAGGCACTTCTTTCAAGCATATTTCAACTCTATTTCTCCCACCAGGTCTTCAATGAGAAGCCATATTCAAAACGCACCAAGATTTGCAGGAAGGAGATACTGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
A_thal_3526

Protein Analysis

103

Amino Acids

12.3

Weight (kDa)

10.57

Isoelectric Point (pI)

68.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
A_thal_3526 PF09713 24 - 74 3.3e-24 Plant protein 1589 of unknown function (A_thal_3526)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10657 AT1G10657 AT1G10657 AT1G10657
fragaria_vesca FvH4_4g32920
malus_domestica MD13G1095000.v1.1 MD16G1096100.v1.1
prunus_persica Prupe.1G250400_v2.0.a1
pyrus_communis pycom13g08280
rosa_chinensis RchiOBHm_Chr4g0441951
rosa_multiflora Rmu_sc0002501.1_g000031 Rmu_sc0011990.1_g000009
rosa_roxburghii Rroxscaffold_5G00382780
rosa_rugosa Rorug04G0337100 Rorug04G0337200
rosa_samantha Rh4AG389100
rosa_wichuraiana Rw4G033600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcyI GRCGYC 1 cut(s) 28
AfiI CCNNNNNNNGG 1 cut(s) 138
AgsI TTSAA 5 cut(s) 74, 215, 226, 252, 269
AjnI CCWGG 1 cut(s) 242
AluBI AGCT 1 cut(s) 187
AluI AGCT 1 cut(s) 187
AspA2I CCTAGG 1 cut(s) 22
AvrII CCTAGG 1 cut(s) 22
BbsI GAAGAC 1 cut(s) 240
BccI CCATC 1 cut(s) 24
BceAI ACGGC 1 cut(s) 155
BciT130I CCWGG 1 cut(s) 244
BfaI CTAG 1 cut(s) 23
BlnI CCTAGG 1 cut(s) 22
Bme1390I CCNGG 1 cut(s) 244
BmrFI CCNGG 1 cut(s) 244
BmsI GCATC 1 cut(s) 13
BpiI GAAGAC 1 cut(s) 240
Bpu10I CCTNAGC 1 cut(s) 133
BsaHI GRCGYC 1 cut(s) 28
BsaJI CCNNGG 1 cut(s) 22
Bsc4I CCNNNNNNNGG 1 cut(s) 138
Bse1I ACTGG 2 cut(s) 118, 305
Bse3DI GCAATG 1 cut(s) 40
BseBI CCWGG 1 cut(s) 244
BseDI CCNNGG 1 cut(s) 22
BseLI CCNNNNNNNGG 1 cut(s) 138
BseMI GCAATG 1 cut(s) 40
BseNI ACTGG 2 cut(s) 118, 305
BslI CCNNNNNNNGG 1 cut(s) 138
BsrDI GCAATG 1 cut(s) 40
BsrI ACTGG 2 cut(s) 118, 305
BssECI CCNNGG 1 cut(s) 22
BssNI GRCGYC 1 cut(s) 28
BssT1I CCWWGG 1 cut(s) 22
Bst2UI CCWGG 1 cut(s) 244
Bst4CI ACNGT 1 cut(s) 175
BstACI GRCGYC 1 cut(s) 28
BstAPI GCANNNNNTGC 1 cut(s) 143
BstC8I GCNNGC 2 cut(s) 38, 144
BstDEI CTNAG 1 cut(s) 133
BstMWI GCNNNNNNNGC 2 cut(s) 42, 143
BstNI CCWGG 1 cut(s) 244
BstNSI RCATGY 1 cut(s) 146
BstSCI CCNGG 1 cut(s) 242
BstV2I GAAGAC 1 cut(s) 240
BtsIMutI CAGTG 1 cut(s) 125
Cac8I GCNNGC 2 cut(s) 38, 144
CseI GACGC 1 cut(s) 17
CsiI ACCWGGT 1 cut(s) 242
CviAII CATG 3 cut(s) 33, 106, 143
CviJI RGCY 2 cut(s) 187, 261
CviKI_1 RGCY 2 cut(s) 187, 261
DdeI CTNAG 1 cut(s) 133
Eco130I CCWWGG 1 cut(s) 22
EcoRII CCWGG 1 cut(s) 242
EcoT14I CCWWGG 1 cut(s) 22
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 22
FaeI CATG 3 cut(s) 36, 109, 146
FaiI YATR 7 cut(s) 12, 34, 107, 125, 144, 220, 264
FatI CATG 3 cut(s) 32, 105, 142
FspBI CTAG 1 cut(s) 23
HgaI GACGC 1 cut(s) 17
Hin1I GRCGYC 1 cut(s) 28
Hin1II CATG 3 cut(s) 36, 109, 146
HinfI GANTC 1 cut(s) 109
Hpy188III TCNNGA 1 cut(s) 113
HpyAV CCTTC 1 cut(s) 285
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4V TGCA 5 cut(s) 4, 40, 123, 146, 287
HpyF10VI GCNNNNNNNGC 2 cut(s) 42, 143
HpyF3I CTNAG 1 cut(s) 133
Hsp92I GRCGYC 1 cut(s) 28
Hsp92II CATG 3 cut(s) 36, 109, 146
LpnPI CCDG 5 cut(s) 131, 229, 256, 273, 286
LweI GCATC 1 cut(s) 13
MabI ACCWGGT 1 cut(s) 242
MaeI CTAG 1 cut(s) 23
MaeIII GTNAC 1 cut(s) 113
MboII GAAGA 1 cut(s) 240
MlyI GAGTC 1 cut(s) 118
Mph1103I ATGCAT 1 cut(s) 6
MslI CAYNNNNRTG 1 cut(s) 65
MspR9I CCNGG 1 cut(s) 244
MvaI CCWGG 1 cut(s) 244
MwoI GCNNNNNNNGC 2 cut(s) 42, 143
NlaIII CATG 3 cut(s) 36, 109, 146
NmuCI GTSAC 1 cut(s) 113
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 146
PaeI GCATGC 1 cut(s) 146
PleI GAGTC 1 cut(s) 117
PpsI GAGTC 1 cut(s) 117
Psp6I CCWGG 1 cut(s) 242
PspGI CCWGG 1 cut(s) 242
RseI CAYNNNNRTG 1 cut(s) 65
SchI GAGTC 1 cut(s) 118
ScrFI CCNGG 1 cut(s) 244
SetI ASST 2 cut(s) 189, 248
SexAI ACCWGGT 1 cut(s) 242
SfaNI GCATC 1 cut(s) 13
SmiMI CAYNNNNRTG 1 cut(s) 65
SphI GCATGC 1 cut(s) 146
SspMI CTAG 1 cut(s) 23
StyD4I CCNGG 1 cut(s) 242
StyI CCWWGG 1 cut(s) 22
TaaI ACNGT 1 cut(s) 175
TscAI CASTG 1 cut(s) 125
TseFI GTSAC 1 cut(s) 113
Tsp45I GTSAC 1 cut(s) 113
TspRI CASTG 1 cut(s) 125
XceI RCATGY 1 cut(s) 146
XmaJI CCTAGG 1 cut(s) 22
XspI CTAG 1 cut(s) 23
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.