pycom13g08280

Plant protein 1589 of unknown function (A_thal_3526)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0014237
Physical Location & Seq
Reverse (-)
5486927 .. 5487829
903 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g08280.1

Sequence Viewer

Length: 303 bp
ATGTATCACAGTCATCACTTTGGTCCATGTCTTCATTGCCACCCTCAAAGCTACATTAGAATGGTTCAACATCTTATTGAGAGATGCTTGCTACTTCACATGAATCGTGACCAATGCATAAAGGTACTAGCAGAGCATGCACGCATTAGGCCACTCGTCACGCTTACAGTATGGAGAGAGCTACAAAAGGAGAATAGGCACTTCTTCCAAGCATACTTCCACTCTATTTCTCCCAGACCTTTAATGGGCAGTTGTATTCAAAGGGGGCCAAGATTTGGAAGAAGGAAACAGCACTGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
A_thal_3526

Protein Analysis

101

Amino Acids

12.18

Weight (kDa)

10.38

Isoelectric Point (pI)

46.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
A_thal_3526 PF09713 22 - 72 1.4e-23 Plant protein 1589 of unknown function (A_thal_3526)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10657 AT1G10657 AT1G10657 AT1G10657
fragaria_vesca FvH4_4g32920
malus_domestica MD13G1095000.v1.1 MD16G1096100.v1.1
prunus_persica Prupe.1G250400_v2.0.a1
pyrus_communis pycom13g08280
rosa_chinensis RchiOBHm_Chr4g0441951
rosa_multiflora Rmu_sc0002501.1_g000031 Rmu_sc0011990.1_g000009
rosa_roxburghii Rroxscaffold_5G00382780
rosa_rugosa Rorug04G0337100 Rorug04G0337200
rosa_samantha Rh4AG389100
rosa_wichuraiana Rw4G033600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 275
AfaI GTAC 1 cut(s) 126
AfiI CCNNNNNNNGG 2 cut(s) 245, 275
AgsI TTSAA 2 cut(s) 68, 260
AluBI AGCT 2 cut(s) 51, 181
AluI AGCT 2 cut(s) 51, 181
AoxI GGCC 2 cut(s) 149, 266
AspS9I GGNCC 2 cut(s) 23, 266
AvaII GGWCC 1 cut(s) 23
BbsI GAAGAC 1 cut(s) 23
BfaI CTAG 1 cut(s) 128
Bme18I GGWCC 1 cut(s) 23
BmgT120I GGNCC 2 cut(s) 23, 266
BmiI GGNNCC 1 cut(s) 267
BmsI GCATC 1 cut(s) 74
BpiI GAAGAC 1 cut(s) 23
Bsc4I CCNNNNNNNGG 2 cut(s) 245, 275
Bse1I ACTGG 1 cut(s) 299
Bse3DI GCAATG 1 cut(s) 34
BseLI CCNNNNNNNGG 2 cut(s) 245, 275
BseMI GCAATG 1 cut(s) 34
BseNI ACTGG 1 cut(s) 299
BshFI GGCC 2 cut(s) 151, 268
BslI CCNNNNNNNGG 2 cut(s) 245, 275
BsnI GGCC 2 cut(s) 151, 268
BspANI GGCC 2 cut(s) 151, 268
BspLI GGNNCC 1 cut(s) 267
BsrDI GCAATG 1 cut(s) 34
BsrI ACTGG 1 cut(s) 299
Bst4CI ACNGT 2 cut(s) 11, 169
BstAPI GCANNNNNTGC 1 cut(s) 137
BstC8I GCNNGC 3 cut(s) 89, 138, 142
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstNSI RCATGY 1 cut(s) 140
BstV2I GAAGAC 1 cut(s) 23
BsuRI GGCC 2 cut(s) 151, 268
BtsIMutI CAGTG 1 cut(s) 292
Cac8I GCNNGC 3 cut(s) 89, 138, 142
Cfr13I GGNCC 2 cut(s) 23, 266
Csp6I GTAC 1 cut(s) 125
CviAII CATG 3 cut(s) 27, 100, 137
CviJI RGCY 4 cut(s) 51, 151, 181, 268
CviKI_1 RGCY 4 cut(s) 51, 151, 181, 268
CviQI GTAC 1 cut(s) 125
Eco47I GGWCC 1 cut(s) 23
EcoT22I ATGCAT 1 cut(s) 119
FaeI CATG 3 cut(s) 30, 103, 140
FaiI YATR 6 cut(s) 28, 101, 119, 138, 172, 214
FatI CATG 3 cut(s) 26, 99, 136
FspBI CTAG 1 cut(s) 128
HaeIII GGCC 2 cut(s) 151, 268
Hin1II CATG 3 cut(s) 30, 103, 140
HinfI GANTC 1 cut(s) 103
Hpy188III TCNNGA 1 cut(s) 107
HpyAV CCTTC 1 cut(s) 276
HpyCH4III ACNGT 2 cut(s) 11, 169
HpyCH4V TGCA 2 cut(s) 117, 140
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
Hsp92II CATG 3 cut(s) 30, 103, 140
LpnPI CCDG 2 cut(s) 247, 280
LweI GCATC 1 cut(s) 74
MaeI CTAG 1 cut(s) 128
MaeIII GTNAC 2 cut(s) 107, 157
MboII GAAGA 3 cut(s) 23, 196, 291
MnlI CCTC 1 cut(s) 54
Mph1103I ATGCAT 1 cut(s) 119
MseI TTAA 1 cut(s) 242
MslI CAYNNNNRTG 1 cut(s) 59
MwoI GCNNNNNNNGC 1 cut(s) 137
NlaIII CATG 3 cut(s) 30, 103, 140
NlaIV GGNNCC 1 cut(s) 267
NmuCI GTSAC 2 cut(s) 107, 157
NsiI ATGCAT 1 cut(s) 119
NspI RCATGY 1 cut(s) 140
PaeI GCATGC 1 cut(s) 140
PfeI GAWTC 1 cut(s) 103
PflMI CCANNNNNTGG 1 cut(s) 275
PspN4I GGNNCC 1 cut(s) 267
PspPI GGNCC 2 cut(s) 23, 266
RsaI GTAC 1 cut(s) 126
RsaNI GTAC 1 cut(s) 125
RseI CAYNNNNRTG 1 cut(s) 59
SaqAI TTAA 1 cut(s) 242
Sau96I GGNCC 2 cut(s) 23, 266
SetI ASST 4 cut(s) 53, 126, 183, 241
SfaNI GCATC 1 cut(s) 74
SinI GGWCC 1 cut(s) 23
SmiMI CAYNNNNRTG 1 cut(s) 59
SphI GCATGC 1 cut(s) 140
SspMI CTAG 1 cut(s) 128
TaaI ACNGT 2 cut(s) 11, 169
TfiI GAWTC 1 cut(s) 103
Tru1I TTAA 1 cut(s) 242
Tru9I TTAA 1 cut(s) 242
TscAI CASTG 1 cut(s) 299
TseFI GTSAC 2 cut(s) 107, 157
Tsp45I GTSAC 2 cut(s) 107, 157
TspDTI ATGAA 2 cut(s) 23, 116
TspRI CASTG 1 cut(s) 299
Van91I CCANNNNNTGG 1 cut(s) 275
VpaK11BI GGWCC 1 cut(s) 23
XceI RCATGY 1 cut(s) 140
XcmI CCANNNNNNNNNTGG 1 cut(s) 241
XspI CTAG 1 cut(s) 128
Zsp2I ATGCAT 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.