Rorug04G0337200

Plant protein 1589 of unknown function (A_thal_3526)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0014237
Physical Location & Seq
Reverse (-)
51084529 .. 51084846
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0337200.1

Sequence Viewer

Length: 318 bp
ATGTCCACCGGTGAAGTCGCTTGCATCTATGCCGCCGTGATTCTTCAGGACGATGGCATCCCAATCACAGCAGAGAACATTGCTACCTTGGTGAAATCTGCAAACGTGGCAGTAGAATCATACTGGCCACGCCTCTTAGCCAACTTTGCGGAGAAGAGGAACCTTGAGGACCTTATTATGAATGCTGTTGGTTCGGCTCCAGCTCCAGTAGCTATGGCTGCTCCTGATGTTGGTGCTGCTACTCCTGCAGTTGAGGAAAAGAAGGAAGAACCAGAGGAAGAAAGCGATGACGACAGGATAATCGACTTGTTTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
A_thal_3526

Protein Analysis

105

Amino Acids

11.18

Weight (kDa)

4.05

Isoelectric Point (pI)

59.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_60s PF00428 22 - 104 2.1e-21 60s Acidic ribosomal protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10657 AT1G10657 AT1G10657 AT1G10657
fragaria_vesca FvH4_4g32920
malus_domestica MD13G1095000.v1.1 MD16G1096100.v1.1
prunus_persica Prupe.1G250400_v2.0.a1
pyrus_communis pycom13g08280
rosa_chinensis RchiOBHm_Chr4g0441951
rosa_multiflora Rmu_sc0002501.1_g000031 Rmu_sc0011990.1_g000009
rosa_roxburghii Rroxscaffold_5G00382780
rosa_rugosa Rorug04G0337100 Rorug04G0337200
rosa_samantha Rh4AG389100
rosa_wichuraiana Rw4G033600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 33, 149
AcoI YGGCCR 1 cut(s) 125
AcuI CTGAAG 1 cut(s) 29
AfiI CCNNNNNNNGG 1 cut(s) 230
AgeI ACCGGT 1 cut(s) 8
AluBI AGCT 2 cut(s) 203, 212
AluI AGCT 2 cut(s) 203, 212
AoxI GGCC 1 cut(s) 125
ApeKI GCWGC 2 cut(s) 218, 236
AsiGI ACCGGT 1 cut(s) 8
AspS9I GGNCC 1 cut(s) 169
AsuHPI GGTGA 2 cut(s) 23, 103
AvaII GGWCC 1 cut(s) 169
BalI TGGCCA 1 cut(s) 127
BbvI GCAGC 2 cut(s) 205, 223
BccI CCATC 1 cut(s) 47
BceAI ACGGC 1 cut(s) 20
BfmI CTRYAG 1 cut(s) 246
BisI GCNGC 3 cut(s) 33, 219, 237
BlsI GCNGC 3 cut(s) 34, 220, 238
Bme18I GGWCC 1 cut(s) 169
BmgT120I GGNCC 1 cut(s) 169
BmiI GGNNCC 2 cut(s) 161, 198
BmsI GCATC 2 cut(s) 33, 66
BpmI CTGGAG 2 cut(s) 183, 189
BpuEI CTTGAG 1 cut(s) 185
BsaJI CCNNGG 1 cut(s) 87
BsaWI WCCGGW 1 cut(s) 8
Bsc4I CCNNNNNNNGG 1 cut(s) 230
Bse118I RCCGGY 1 cut(s) 8
Bse1I ACTGG 2 cut(s) 128, 206
Bse3DI GCAATG 1 cut(s) 78
BseDI CCNNGG 1 cut(s) 87
BseGI GGATG 1 cut(s) 57
BseLI CCNNNNNNNGG 1 cut(s) 230
BseMI GCAATG 1 cut(s) 78
BseNI ACTGG 2 cut(s) 128, 206
BseXI GCAGC 2 cut(s) 205, 223
BshFI GGCC 1 cut(s) 127
BshTI ACCGGT 1 cut(s) 8
BsiSI CCGG 1 cut(s) 9
BslI CCNNNNNNNGG 1 cut(s) 230
BsmI GAATGC 1 cut(s) 187
BsnI GGCC 1 cut(s) 127
BspACI CCGC 2 cut(s) 33, 149
BspANI GGCC 1 cut(s) 127
BspLI GGNNCC 2 cut(s) 161, 198
BspMAI CTGCAG 1 cut(s) 250
BsrDI GCAATG 1 cut(s) 78
BsrFI RCCGGY 1 cut(s) 8
BsrI ACTGG 2 cut(s) 128, 206
BssAI RCCGGY 1 cut(s) 8
BssECI CCNNGG 1 cut(s) 87
BssT1I CCWWGG 1 cut(s) 87
Bst6I CTCTTC 1 cut(s) 149
BstC8I GCNNGC 1 cut(s) 22
BstDEI CTNAG 1 cut(s) 136
BstF5I GGATG 1 cut(s) 57
BstMWI GCNNNNNNNGC 5 cut(s) 107, 146, 209, 218, 245
BstSFI CTRYAG 1 cut(s) 246
BstV1I GCAGC 2 cut(s) 205, 223
BsuRI GGCC 1 cut(s) 127
BtgZI GCGATG 1 cut(s) 300
BtsCI GGATG 1 cut(s) 57
Cac8I GCNNGC 1 cut(s) 22
Cfr10I RCCGGY 1 cut(s) 8
Cfr13I GGNCC 1 cut(s) 169
CspAI ACCGGT 1 cut(s) 8
CviJI RGCY 6 cut(s) 127, 140, 197, 203, 212, 218
CviKI_1 RGCY 6 cut(s) 127, 140, 197, 203, 212, 218
DdeI CTNAG 1 cut(s) 136
EaeI YGGCCR 1 cut(s) 125
Eam1104I CTCTTC 1 cut(s) 149
EarI CTCTTC 1 cut(s) 149
Eco130I CCWWGG 1 cut(s) 87
Eco47I GGWCC 1 cut(s) 169
Eco57I CTGAAG 1 cut(s) 29
EcoO109I RGGNCCY 1 cut(s) 169
EcoT14I CCWWGG 1 cut(s) 87
ErhI CCWWGG 1 cut(s) 87
FaiI YATR 4 cut(s) 30, 121, 179, 215
Fnu4HI GCNGC 3 cut(s) 33, 219, 237
FokI GGATG 1 cut(s) 44
Fsp4HI GCNGC 3 cut(s) 33, 219, 237
GluI GCNGC 3 cut(s) 33, 219, 237
GsuI CTGGAG 2 cut(s) 183, 189
HaeIII GGCC 1 cut(s) 127
HapII CCGG 1 cut(s) 9
HinfI GANTC 2 cut(s) 40, 116
HpaII CCGG 1 cut(s) 9
HphI GGTGA 2 cut(s) 23, 103
Hpy166II GTNNAC 1 cut(s) 6
Hpy188III TCNNGA 2 cut(s) 47, 224
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 1 cut(s) 256
HpyCH4IV ACGT 1 cut(s) 105
HpyCH4V TGCA 3 cut(s) 24, 101, 248
HpyF10VI GCNNNNNNNGC 5 cut(s) 107, 146, 209, 218, 245
HpyF3I CTNAG 1 cut(s) 136
HpySE526I ACGT 1 cut(s) 105
LmnI GCTCC 3 cut(s) 202, 208, 226
LpnPI CCDG 9 cut(s) 22, 32, 109, 213, 219, 237, 258, 280, 285
Lsp1109I GCAGC 2 cut(s) 205, 223
LweI GCATC 2 cut(s) 33, 66
MaeII ACGT 1 cut(s) 105
MboII GAAGA 4 cut(s) 35, 166, 278, 290
MlsI TGGCCA 1 cut(s) 127
MluNI TGGCCA 1 cut(s) 127
MnlI CCTC 5 cut(s) 143, 150, 160, 247, 268
Mox20I TGGCCA 1 cut(s) 127
MscI TGGCCA 1 cut(s) 127
MseI TTAA 1 cut(s) 316
Msp20I TGGCCA 1 cut(s) 127
MspI CCGG 1 cut(s) 9
Mva1269I GAATGC 1 cut(s) 187
MwoI GCNNNNNNNGC 5 cut(s) 107, 146, 209, 218, 245
NlaIV GGNNCC 2 cut(s) 161, 198
PctI GAATGC 1 cut(s) 187
PfeI GAWTC 2 cut(s) 40, 116
PinAI ACCGGT 1 cut(s) 8
PkrI GCNGC 3 cut(s) 34, 220, 238
PpuMI RGGWCCY 1 cut(s) 169
Psp5II RGGWCCY 1 cut(s) 169
PspN4I GGNNCC 2 cut(s) 161, 198
PspPI GGNCC 1 cut(s) 169
PspPPI RGGWCCY 1 cut(s) 169
PstI CTGCAG 1 cut(s) 250
SaqAI TTAA 1 cut(s) 316
SatI GCNGC 3 cut(s) 33, 219, 237
Sau96I GGNCC 1 cut(s) 169
SetI ASST 6 cut(s) 89, 108, 165, 174, 205, 214
SfaNI GCATC 2 cut(s) 33, 66
SfcI CTRYAG 1 cut(s) 246
SgrAI CRCCGGYG 1 cut(s) 8
SinI GGWCC 1 cut(s) 169
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
SsiI CCGC 2 cut(s) 33, 149
StyI CCWWGG 1 cut(s) 87
TaiI ACGT 1 cut(s) 108
TaqI TCGA 1 cut(s) 303
TauI GCSGC 1 cut(s) 35
TfiI GAWTC 2 cut(s) 40, 116
Tru1I TTAA 1 cut(s) 316
Tru9I TTAA 1 cut(s) 316
TseI GCWGC 2 cut(s) 218, 236
TspDTI ATGAA 1 cut(s) 194
VpaK11BI GGWCC 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.