AT1G10780

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010481
Physical Location & Seq
Reverse (-)
3592680 .. 3595220
2541 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G10780.2

Sequence Viewer

Length: 1257 bp
ATGGACTCTCTTCCTGATGCGATCCTTCAATACATTCTTTCCTACCTGACTTCTGCAAGGGATGTGGCTGCTTGCAACTGTGTCTCCAAGCGATGGAAAGAGTCTACAGACTCTGTTAAGAGCGTTGTTTTCCACAGGAATTCATTCGAAAGCATCATGGAGACTGATGATTCTGACTCCATCGTTCGGAAGATGATCTCTTCTTCTCGTCGTCTTGAGGAGCTTGTGGTGTATAGCCCATTCACTAGCAGCGGCCTAGCATCTTGGATGATGCATGTGAGTTCATCTCTAAGGCTATTGGAGTTAAGAATGGATAATCTCGCTAGCGAGGAGGTTGTTGTCGAAGGCCCTTTGAAGCTTGATTGCATTGGTGTGGCCAAGAATTTGGAGATTTTGAAGCTTTGGGGTGTTTTAATGATGAGCCCTCCTAAGTGGGATATGTTCCCAAACCTTCGAAGCCTCGAAATAGTGGGAGCAAAAATGGATGATTCCTCACTGTCTCATGCTCTTCGTGCATGCCCGAATCTGAGTAACTTGCTTCTACTAGCTTGTGAGGGAGTTAAATCCATATCAATCGATCTGCCATACTTGGAGCACTGTAAGCTGGATTTCTATGGACAAGGTAACACCTTGCTAGTCCTCACGAGTCAGAGATTAGTGTCCCTTGATGTTCAAGGTTGTAGCTGGATTCGTGTCCCTGAAACCAAATTCTTAAAGAACCTATCCATCTCCAGTGTTACTGGGAGAGTTTACATGGTAGATTTCAATAATCTTTCATCGCTTGAGGCCTTGTCGATTCGAGGTGTACAATGGTGTTGGGATGCAATATGCATGATACTGCAGCAAGCAAGAGACGTGAAGCATCTCTTTATGAAGGTTGAATTCACAGGCAATGAGGCTCTTCAACCTTTCCCTGAGATTGATTTTGTCGAGTTCTTCAATAACCATCCAAAGCTTCAAACATTCGACATCCATGGAGCAATGTTCGCTGCACTCTGCCAGAAAAACAGCCTTAAGAAGCTTGAGACCGGATTTACAATACCGTGTTTGGAGGAGGTTGTTATCACAGTGAGATCTCCACTGAACGCAGAACAGAAGATGAACACGCTTGAATCACTAGTGAAATACGCGAGAGGTCTGAAACGAATGGTGATAAGGATTCTCCGGATGAAGAGCAATCACAGCAGTGCAGATGATTTCTGCGATGATATCTGCAAGTTCCGGCACATGAACGAGCATCTTGTTCATATAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

418

Amino Acids

47.4

Weight (kDa)

6.15

Isoelectric Point (pI)

54.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 7 - 43 3e-09 F-box-like
LRR_At5g56370 PF24758 141 - 228 9.1e-07 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010481)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10780 AT1G10780
fragaria_vesca FvH4_5g29550 FvH4_5g29550
malus_domestica MD08G1228700.v1.1 MD15G1422700.v1.1
prunus_persica Prupe.1G568000_v2.0.a1
pyrus_communis pycom15g37460
rosa_chinensis RchiOBHm_Chr7g0222501
rosa_laevigata RLG00000002049
rosa_multiflora Rmu_ssc0000146.1_g000020
rosa_roxburghii Rroxscaffold_3G00236730
rosa_rugosa Rorug07G0209900 Rorug07G0210000 Rorug07G0210000
rosa_samantha Rh7AG351700 Rh7BG342300 Rh7CG369100 Rh7DG348400
rosa_wichuraiana Rw7G029690 Rw7G030020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 93
AccI GTMKAC 1 cut(s) 104
AccII CGCG 1 cut(s) 1130
AccIII TCCGGA 1 cut(s) 1164
AciI CCGC 1 cut(s) 252
AclWI GGATC 1 cut(s) 16
AcoI YGGCCR 1 cut(s) 375
AcsI RAATTY 4 cut(s) 139, 382, 707, 881
AfaI GTAC 1 cut(s) 807
AfiI CCNNNNNNNGG 2 cut(s) 93, 186
AflII CTTAAG 1 cut(s) 1013
AhlI ACTAGT 1 cut(s) 1117
AjiI CACGTC 1 cut(s) 856
AleI CACNNNNGTG 1 cut(s) 1185
AluBI AGCT 8 cut(s) 223, 358, 400, 548, 604, 684, 955, 1021
AluI AGCT 8 cut(s) 223, 358, 400, 548, 604, 684, 955, 1021
Alw21I GWGCWC 1 cut(s) 597
Alw26I GTCTC 5 cut(s) 88, 155, 504, 846, 1019
AlwI GGATC 1 cut(s) 16
AlwNI CAGNNNCTG 1 cut(s) 113
Aor13HI TCCGGA 1 cut(s) 1164
AoxI GGCC 4 cut(s) 253, 346, 375, 786
ApeKI GCWGC 4 cut(s) 68, 249, 841, 989
ApoI RAATTY 4 cut(s) 139, 382, 707, 881
Asp700I GAANNNNTTC 1 cut(s) 143
AspS9I GGNCC 1 cut(s) 347
AsuHPI GGTGA 1 cut(s) 1162
AsuII TTCGAA 2 cut(s) 147, 454
AsuNHI GCTAGC 1 cut(s) 323
BalI TGGCCA 1 cut(s) 377
BanII GRGCYC 1 cut(s) 425
BauI CACGAG 1 cut(s) 643
Bbv12I GWGCWC 1 cut(s) 597
BbvI GCAGC 4 cut(s) 55, 261, 853, 976
BccI CCATC 4 cut(s) 87, 188, 734, 954
BcoDI GTCTC 5 cut(s) 88, 155, 504, 846, 1019
BcuI ACTAGT 1 cut(s) 1117
BfaI CTAG 6 cut(s) 246, 257, 324, 545, 635, 1118
BfmI CTRYAG 2 cut(s) 105, 839
BfrI CTTAAG 1 cut(s) 1013
BglII AGATCT 1 cut(s) 1073
BisI GCNGC 5 cut(s) 69, 250, 253, 842, 990
BlsI GCNGC 5 cut(s) 70, 251, 254, 843, 991
BmgBI CACGTC 1 cut(s) 856
BmgT120I GGNCC 1 cut(s) 347
BmrI ACTGGG 1 cut(s) 750
BmsI GCATC 7 cut(s) 7, 162, 261, 269, 811, 871, 1246
BmtI GCTAGC 1 cut(s) 327
BmuI ACTGGG 1 cut(s) 750
BplI GAGNNNNNCTC 2 cut(s) 271, 303
BpmI CTGGAG 1 cut(s) 715
Bpu14I TTCGAA 2 cut(s) 147, 454
BpuEI CTTGAG 3 cut(s) 236, 803, 1043
Bsa29I ATCGAT 1 cut(s) 576
BsaI GGTCTC 1 cut(s) 1019
BsaJI CCNNGG 1 cut(s) 973
BsaWI WCCGGW 2 cut(s) 1028, 1164
BsaXI ACNNNNNCTCC 2 cut(s) 68, 98
Bsc4I CCNNNNNNNGG 2 cut(s) 93, 186
Bse1I ACTGG 2 cut(s) 732, 745
Bse3DI GCAATG 2 cut(s) 898, 987
BseAI TCCGGA 1 cut(s) 1164
BseCI ATCGAT 1 cut(s) 576
BseDI CCNNGG 1 cut(s) 973
BseGI GGATG 7 cut(s) 67, 273, 490, 826, 946, 969, 1173
BseLI CCNNNNNNNGG 2 cut(s) 93, 186
BseMI GCAATG 2 cut(s) 898, 987
BseMII CTCAG 2 cut(s) 518, 906
BseNI ACTGG 2 cut(s) 732, 745
BseRI GAGGAG 3 cut(s) 233, 344, 1067
BseXI GCAGC 4 cut(s) 55, 261, 853, 976
BsgI GTGCAG 2 cut(s) 975, 1209
Bsh1236I CGCG 1 cut(s) 1130
BshFI GGCC 4 cut(s) 255, 348, 377, 788
BshVI ATCGAT 1 cut(s) 576
BsiHKAI GWGCWC 1 cut(s) 597
BsiSI CCGG 3 cut(s) 1029, 1165, 1222
BslFI GGGAC 2 cut(s) 646, 680
BslI CCNNNNNNNGG 2 cut(s) 93, 186
BsmAI GTCTC 5 cut(s) 88, 155, 504, 846, 1019
BsmBI CGTCTC 1 cut(s) 846
BsmFI GGGAC 2 cut(s) 646, 680
BsnI GGCC 4 cut(s) 255, 348, 377, 788
Bso31I GGTCTC 1 cut(s) 1019
Bsp119I TTCGAA 2 cut(s) 147, 454
Bsp1286I GDGCHC 2 cut(s) 425, 597
Bsp13I TCCGGA 1 cut(s) 1164
Bsp1407I TGTACA 1 cut(s) 805
Bsp143I GATC 4 cut(s) 21, 195, 577, 1073
Bsp19I CCATGG 1 cut(s) 973
BspACI CCGC 1 cut(s) 252
BspANI GGCC 4 cut(s) 255, 348, 377, 788
BspCNI CTCAG 2 cut(s) 519, 907
BspDI ATCGAT 1 cut(s) 576
BspEI TCCGGA 1 cut(s) 1164
BspFNI CGCG 1 cut(s) 1130
BspMAI CTGCAG 1 cut(s) 843
BspOI GCTAGC 1 cut(s) 327
BspPI GGATC 1 cut(s) 16
BspQI GCTCTTC 3 cut(s) 513, 906, 1166
BspT104I TTCGAA 2 cut(s) 147, 454
BspTI CTTAAG 1 cut(s) 1013
BspTNI GGTCTC 1 cut(s) 1019
BsrDI GCAATG 2 cut(s) 898, 987
BsrGI TGTACA 1 cut(s) 805
BsrI ACTGG 2 cut(s) 732, 745
BssECI CCNNGG 1 cut(s) 973
BssMI GATC 4 cut(s) 21, 195, 577, 1073
BssSI CACGAG 1 cut(s) 643
BssT1I CCWWGG 1 cut(s) 973
Bst2BI CACGAG 1 cut(s) 643
Bst4CI ACNGT 5 cut(s) 80, 498, 599, 1044, 1069
Bst6I CTCTTC 5 cut(s) 15, 205, 513, 906, 1166
BstAFI CTTAAG 1 cut(s) 1013
BstAUI TGTACA 1 cut(s) 805
BstBI TTCGAA 2 cut(s) 147, 454
BstC8I GCNNGC 4 cut(s) 73, 325, 517, 846
BstDEI CTNAG 4 cut(s) 290, 429, 527, 915
BstDSI CCRYGG 1 cut(s) 973
BstF5I GGATG 7 cut(s) 67, 273, 490, 826, 946, 969, 1173
BstFNI CGCG 1 cut(s) 1130
BstKTI GATC 4 cut(s) 24, 198, 580, 1076
BstMAI GTCTC 5 cut(s) 88, 155, 504, 846, 1019
BstMBI GATC 4 cut(s) 21, 195, 577, 1073
BstMWI GCNNNNNNNGC 4 cut(s) 512, 601, 986, 1182
BstNSI RCATGY 2 cut(s) 278, 519
BstSFI CTRYAG 2 cut(s) 105, 839
BstUI CGCG 1 cut(s) 1130
BstV1I GCAGC 4 cut(s) 55, 261, 853, 976
BstX2I RGATCY 1 cut(s) 1073
BstXI CCANNNNNNTGG 1 cut(s) 385
BstYI RGATCY 1 cut(s) 1073
Bsu15I ATCGAT 1 cut(s) 576
BsuRI GGCC 4 cut(s) 255, 348, 377, 788
BsuTUI ATCGAT 1 cut(s) 576
BtgI CCRYGG 1 cut(s) 973
BtgZI GCGATG 3 cut(s) 106, 762, 1218
BtrI CACGTC 1 cut(s) 856
BtsCI GGATG 7 cut(s) 67, 273, 490, 826, 946, 969, 1173
BtsI GCAGTG 1 cut(s) 1192
BtsIMutI CAGTG 6 cut(s) 494, 595, 739, 1074, 1079, 1192
Cac8I GCNNGC 4 cut(s) 73, 325, 517, 846
CaiI CAGNNNCTG 1 cut(s) 113
Cfr13I GGNCC 1 cut(s) 347
ClaI ATCGAT 1 cut(s) 576
Csp6I GTAC 1 cut(s) 806
CspCI CAANNNNNGTGG 2 cut(s) 45, 80
CviAII CATG 8 cut(s) 157, 275, 503, 516, 754, 832, 974, 1228
CviQI GTAC 1 cut(s) 806
DdeI CTNAG 4 cut(s) 290, 429, 527, 915
DpnI GATC 4 cut(s) 23, 197, 579, 1075
DpnII GATC 4 cut(s) 21, 195, 577, 1073
EaeI YGGCCR 1 cut(s) 375
Eam1104I CTCTTC 5 cut(s) 15, 205, 513, 906, 1166
EarI CTCTTC 5 cut(s) 15, 205, 513, 906, 1166
Eco130I CCWWGG 1 cut(s) 973
Eco147I AGGCCT 1 cut(s) 788
Eco24I GRGCYC 1 cut(s) 425
Eco31I GGTCTC 1 cut(s) 1019
Eco32I GATATC 1 cut(s) 1210
EcoO109I RGGNCCY 1 cut(s) 347
EcoRI GAATTC 2 cut(s) 139, 881
EcoRV GATATC 1 cut(s) 1210
EcoT14I CCWWGG 1 cut(s) 973
EcoT22I ATGCAT 2 cut(s) 276, 833
EcoT38I GRGCYC 1 cut(s) 425
ErhI CCWWGG 1 cut(s) 973
Esp3I CGTCTC 1 cut(s) 846
FaeI CATG 8 cut(s) 160, 278, 506, 519, 757, 835, 977, 1231
FalI AAGNNNNNCTT 2 cut(s) 851, 883
FaqI GGGAC 2 cut(s) 646, 680
FatI CATG 8 cut(s) 156, 274, 502, 515, 753, 831, 973, 1227
FblI GTMKAC 1 cut(s) 104
Fnu4HI GCNGC 5 cut(s) 69, 250, 253, 842, 990
FokI GGATG 7 cut(s) 74, 280, 497, 833, 933, 956, 1180
FriOI GRGCYC 1 cut(s) 425
Fsp4HI GCNGC 5 cut(s) 69, 250, 253, 842, 990
FspBI CTAG 6 cut(s) 246, 257, 324, 545, 635, 1118
GluI GCNGC 5 cut(s) 69, 250, 253, 842, 990
GsuI CTGGAG 1 cut(s) 715
HaeIII GGCC 4 cut(s) 255, 348, 377, 788
HapII CCGG 3 cut(s) 1029, 1165, 1222
Hin1II CATG 8 cut(s) 160, 278, 506, 519, 757, 835, 977, 1231
HindIII AAGCTT 4 cut(s) 356, 398, 953, 1019
HpaII CCGG 3 cut(s) 1029, 1165, 1222
HphI GGTGA 1 cut(s) 1162
Hpy166II GTNNAC 3 cut(s) 105, 751, 806
Hpy188I TCNGA 5 cut(s) 175, 189, 528, 651, 1140
Hpy188III TCNNGA 4 cut(s) 14, 215, 643, 1165
Hpy8I GTNNAC 3 cut(s) 105, 751, 806
Hpy99I CGWCG 1 cut(s) 213
HpyAV CCTTC 4 cut(s) 35, 338, 461, 868
HpyCH4III ACNGT 5 cut(s) 80, 498, 599, 1044, 1069
HpyCH4IV ACGT 1 cut(s) 855
HpyF10VI GCNNNNNNNGC 4 cut(s) 512, 601, 986, 1182
HpyF3I CTNAG 4 cut(s) 290, 429, 527, 915
HpySE526I ACGT 1 cut(s) 855
Hsp92II CATG 8 cut(s) 160, 278, 506, 519, 757, 835, 977, 1231
Kpn2I TCCGGA 1 cut(s) 1164
Kzo9I GATC 4 cut(s) 21, 195, 577, 1073
LguI GCTCTTC 3 cut(s) 513, 906, 1166
LmnI GCTCC 4 cut(s) 220, 473, 592, 977
Lsp1109I GCAGC 4 cut(s) 55, 261, 853, 976
LweI GCATC 7 cut(s) 7, 162, 261, 269, 811, 871, 1246
MaeI CTAG 6 cut(s) 246, 257, 324, 545, 635, 1118
MaeII ACGT 1 cut(s) 855
MaeIII GTNAC 3 cut(s) 530, 623, 736
MalI GATC 4 cut(s) 23, 197, 579, 1075
MboI GATC 4 cut(s) 21, 195, 577, 1073
MboII GAAGA 8 cut(s) 192, 195, 202, 500, 893, 928, 1108, 1183
MflI RGATCY 1 cut(s) 1073
MhlI GDGCHC 2 cut(s) 425, 597
MlsI TGGCCA 1 cut(s) 377
MluCI AATT 4 cut(s) 139, 382, 707, 881
MluNI TGGCCA 1 cut(s) 377
MlyI GAGTC 4 cut(s) 104, 110, 170, 655
Mox20I TGGCCA 1 cut(s) 377
Mph1103I ATGCAT 2 cut(s) 276, 833
MroI TCCGGA 1 cut(s) 1164
MroXI GAANNNNTTC 1 cut(s) 143
MscI TGGCCA 1 cut(s) 377
MseI TTAA 6 cut(s) 117, 305, 413, 561, 713, 1014
MslI CAYNNNNRTG 2 cut(s) 371, 1185
Msp20I TGGCCA 1 cut(s) 377
MspA1I CMGCKG 1 cut(s) 252
MspCI CTTAAG 1 cut(s) 1013
MspI CCGG 3 cut(s) 1029, 1165, 1222
MvnI CGCG 1 cut(s) 1130
MwoI GCNNNNNNNGC 4 cut(s) 512, 601, 986, 1182
NcoI CCATGG 1 cut(s) 973
NdeII GATC 4 cut(s) 21, 195, 577, 1073
NheI GCTAGC 1 cut(s) 323
NlaIII CATG 8 cut(s) 160, 278, 506, 519, 757, 835, 977, 1231
NsiI ATGCAT 2 cut(s) 276, 833
NspI RCATGY 2 cut(s) 278, 519
NspV TTCGAA 2 cut(s) 147, 454
OliI CACNNNNGTG 1 cut(s) 1185
PaeI GCATGC 1 cut(s) 519
PceI AGGCCT 1 cut(s) 788
PciSI GCTCTTC 3 cut(s) 513, 906, 1166
PdmI GAANNNNTTC 1 cut(s) 143
PfeI GAWTC 7 cut(s) 170, 488, 523, 688, 796, 1112, 1159
PflMI CCANNNNNTGG 1 cut(s) 93
PkrI GCNGC 5 cut(s) 70, 251, 254, 843, 991
PleI GAGTC 4 cut(s) 104, 109, 170, 654
PpsI GAGTC 4 cut(s) 104, 109, 170, 654
PspPI GGNCC 1 cut(s) 347
PstI CTGCAG 1 cut(s) 843
PstNI CAGNNNCTG 1 cut(s) 113
PsuI RGATCY 1 cut(s) 1073
RsaI GTAC 1 cut(s) 807
RsaNI GTAC 1 cut(s) 806
RseI CAYNNNNRTG 2 cut(s) 371, 1185
SapI GCTCTTC 3 cut(s) 513, 906, 1166
SaqAI TTAA 6 cut(s) 117, 305, 413, 561, 713, 1014
SatI GCNGC 5 cut(s) 69, 250, 253, 842, 990
Sau3AI GATC 4 cut(s) 21, 195, 577, 1073
Sau96I GGNCC 1 cut(s) 347
SchI GAGTC 4 cut(s) 104, 110, 170, 655
SduI GDGCHC 2 cut(s) 425, 597
SfaNI GCATC 7 cut(s) 7, 162, 261, 269, 811, 871, 1246
SfcI CTRYAG 2 cut(s) 105, 839
SfuI TTCGAA 2 cut(s) 147, 454
SmiMI CAYNNNNRTG 2 cut(s) 371, 1185
SmlI CTYRAG 4 cut(s) 215, 782, 1013, 1022
SmoI CTYRAG 4 cut(s) 215, 782, 1013, 1022
SpeI ACTAGT 1 cut(s) 1117
SphI GCATGC 1 cut(s) 519
Sse9I AATT 4 cut(s) 139, 382, 707, 881
SseBI AGGCCT 1 cut(s) 788
SsiI CCGC 1 cut(s) 252
SspMI CTAG 6 cut(s) 246, 257, 324, 545, 635, 1118
StuI AGGCCT 1 cut(s) 788
StyI CCWWGG 1 cut(s) 973
TaaI ACNGT 5 cut(s) 80, 498, 599, 1044, 1069
TaiI ACGT 1 cut(s) 858
TaqI TCGA 9 cut(s) 147, 342, 454, 462, 576, 794, 799, 930, 966
TasI AATT 4 cut(s) 139, 382, 707, 881
TatI WGTACW 1 cut(s) 805
TauI GCSGC 1 cut(s) 255
TfiI GAWTC 7 cut(s) 170, 488, 523, 688, 796, 1112, 1159
Tru1I TTAA 6 cut(s) 117, 305, 413, 561, 713, 1014
Tru9I TTAA 6 cut(s) 117, 305, 413, 561, 713, 1014
TscAI CASTG 6 cut(s) 501, 602, 739, 1074, 1086, 1192
TseI GCWGC 4 cut(s) 68, 249, 841, 989
TspDTI ATGAA 8 cut(s) 132, 273, 765, 887, 1115, 1184, 1235, 1244
TspRI CASTG 6 cut(s) 501, 602, 739, 1074, 1086, 1192
Van91I CCANNNNNTGG 1 cut(s) 93
Vha464I CTTAAG 1 cut(s) 1013
XapI RAATTY 4 cut(s) 139, 382, 707, 881
XceI RCATGY 2 cut(s) 278, 519
XmiI GTMKAC 1 cut(s) 104
XmnI GAANNNNTTC 1 cut(s) 143
XspI CTAG 6 cut(s) 246, 257, 324, 545, 635, 1118
Zsp2I ATGCAT 2 cut(s) 276, 833
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.