Rorug07G0210000

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0010481
Physical Location & Seq
Reverse (-)
18490240 .. 18493429
3190 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0210000.1

Sequence Viewer

Length: 927 bp
ATGATGGGTGCTTTCAGAGTTGTAAGCAAGTCCCTCAGACATTACACACCCAAAGCCTCTATATTTCCAGAGAACTCAATCACTCCCGCCGGACCCAACAAATGGCTTTGCCGGACTCTGATTCTGGAGTCAGCACCCTCTCAGTCCGTCAGCCTCCACAGGCTCTCCGACTCCGATTCCGGAATCGTTGAAGTTAGTTTGGAGAGACCACAAGTGAGAAATGCAATAGGGAAAGATATGCTGAAAGGTTTGCAGAACACGTTTGAAGCTATCAGTAAAGATTCATCTGCTAATGTTTTGTTGATCCGCAGTAAAGTTCCCAAGGCGTTCTGTGCAGGAGCAGATTTGAAGGAACGCAAGATGATGAGTGCAACTGAGGTTCAAGATTTCGTGAACAACCTGCGTGCCACATTCTCATTTCTAGAGGTACTTCCCATTCCTACCATCGCTGTCATTGAAGGGGCAGCATTGGGTGGTGGACTTGAAATGGCTTTATCATGCGATCTTCGGATATGTGGAGAAGATGCAGTATTGGGATTGCCAGAAACTGGACTTGCTATAATTCCCGGGGCAGGTGGGACTCAACGACTTCCTAGAGTGGTTGGAAGATCAATAGCAAAGGAACTCATATTGACTGGGAGGAAGATTGGTGGCAGAGAAGCAATGTCAATGGGTCTGGTAAATTACTGTGTCCATGCTGGTGAAGCTCATCTAAAGGCACTTGAAGTTGCTCGCAATATAAATGAGAAGGGTCCAATAGCAATAAGGATGGCGAAAAGAGCTATTGACCAGGGACTTGAGGTAGATAGGGCATCAGCTTTGGCACTGGAAGAAGAATGCTATGAGCAGACCTTGCACACAGAAGATCGTTTGGAAGCCCTAGCAGCATTTGCTGAGAAGCGGAAGCCAAGGTATACTGGAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

308

Amino Acids

33.29

Weight (kDa)

8.69

Isoelectric Point (pI)

43.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ECH_1 PF00378 59 - 307 7.4e-62 Enoyl-CoA hydratase/isomerase
ECH_2 PF16113 65 - 235 1.9e-32 Enoyl-CoA hydratase/isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010481)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10780 AT1G10780
fragaria_vesca FvH4_5g29550 FvH4_5g29550
malus_domestica MD08G1228700.v1.1 MD15G1422700.v1.1
prunus_persica Prupe.1G568000_v2.0.a1
pyrus_communis pycom15g37460
rosa_chinensis RchiOBHm_Chr7g0222501
rosa_laevigata RLG00000002049
rosa_multiflora Rmu_ssc0000146.1_g000020
rosa_roxburghii Rroxscaffold_3G00236730
rosa_rugosa Rorug07G0209900 Rorug07G0210000 Rorug07G0210000
rosa_samantha Rh7AG351700 Rh7BG342300 Rh7CG369100 Rh7DG348400
rosa_wichuraiana Rw7G029690 Rw7G030020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 563
Acc36I ACCTGC 2 cut(s) 408, 563
AccB7I CCANNNNNTGG 2 cut(s) 102, 548
AccI GTMKAC 1 cut(s) 914
AccIII TCCGGA 1 cut(s) 179
AciI CCGC 3 cut(s) 87, 307, 901
AclWI GGATC 1 cut(s) 298
AfaI GTAC 1 cut(s) 429
AfiI CCNNNNNNNGG 3 cut(s) 102, 548, 572
AflIII ACRYGT 1 cut(s) 258
AgsI TTSAA 7 cut(s) 191, 266, 349, 383, 458, 485, 725
AjnI CCWGG 1 cut(s) 789
AluBI AGCT 4 cut(s) 269, 707, 782, 818
AluI AGCT 4 cut(s) 269, 707, 782, 818
Alw26I GTCTC 1 cut(s) 199
AlwI GGATC 1 cut(s) 298
AlwNI CAGNNNCTG 1 cut(s) 548
Ama87I CYCGRG 1 cut(s) 566
Aor13HI TCCGGA 1 cut(s) 179
ApeKI GCWGC 2 cut(s) 464, 884
AspS9I GGNCC 2 cut(s) 92, 752
AsuC2I CCSGG 2 cut(s) 567, 568
AsuHPI GGTGA 1 cut(s) 713
AvaI CYCGRG 1 cut(s) 566
AvaII GGWCC 2 cut(s) 92, 752
BbvI GCAGC 2 cut(s) 476, 896
BccI CCATC 2 cut(s) 452, 763
BciT130I CCWGG 1 cut(s) 791
BcnI CCSGG 2 cut(s) 567, 568
BcoDI GTCTC 1 cut(s) 199
BfaI CTAG 3 cut(s) 422, 594, 881
BfuAI ACCTGC 2 cut(s) 408, 563
BisI GCNGC 2 cut(s) 465, 885
BlsI GCNGC 2 cut(s) 466, 886
Bme1390I CCNGG 3 cut(s) 567, 568, 791
Bme18I GGWCC 2 cut(s) 92, 752
BmeT110I CYCGRG 1 cut(s) 566
BmgT120I GGNCC 2 cut(s) 92, 752
BmiI GGNNCC 2 cut(s) 94, 753
BmrFI CCNGG 3 cut(s) 567, 568, 791
BmrI ACTGGG 1 cut(s) 645
BmsI GCATC 2 cut(s) 514, 821
BmuI ACTGGG 1 cut(s) 645
BpmI CTGGAG 1 cut(s) 146
BpuEI CTTGAG 1 cut(s) 818
BpuMI CCSGG 2 cut(s) 567, 568
BsaI GGTCTC 1 cut(s) 199
BsaJI CCNNGG 5 cut(s) 321, 566, 567, 790, 908
BsaWI WCCGGW 1 cut(s) 179
BsaXI ACNNNNNCTCC 2 cut(s) 149, 179
Bsc4I CCNNNNNNNGG 3 cut(s) 102, 548, 572
Bse1I ACTGG 4 cut(s) 553, 640, 831, 922
Bse3DI GCAATG 1 cut(s) 669
BseAI TCCGGA 1 cut(s) 179
BseBI CCWGG 1 cut(s) 791
BseDI CCNNGG 5 cut(s) 321, 566, 567, 790, 908
BseGI GGATG 1 cut(s) 774
BseLI CCNNNNNNNGG 3 cut(s) 102, 548, 572
BseMI GCAATG 1 cut(s) 669
BseMII CTCAG 4 cut(s) 49, 155, 366, 885
BseNI ACTGG 4 cut(s) 553, 640, 831, 922
BseXI GCAGC 2 cut(s) 476, 896
BsgI GTGCAG 1 cut(s) 354
BsiHKCI CYCGRG 1 cut(s) 566
BsiSI CCGG 4 cut(s) 90, 112, 180, 567
BslFI GGGAC 3 cut(s) 16, 592, 807
BslI CCNNNNNNNGG 3 cut(s) 102, 548, 572
BsmAI GTCTC 1 cut(s) 199
BsmFI GGGAC 3 cut(s) 16, 592, 807
BsmI GAATGC 1 cut(s) 842
Bso31I GGTCTC 1 cut(s) 199
BsoBI CYCGRG 1 cut(s) 566
Bsp13I TCCGGA 1 cut(s) 179
Bsp143I GATC 4 cut(s) 303, 502, 608, 865
BspACI CCGC 3 cut(s) 87, 307, 901
BspCNI CTCAG 4 cut(s) 48, 154, 367, 886
BspEI TCCGGA 1 cut(s) 179
BspLI GGNNCC 2 cut(s) 94, 753
BspMI ACCTGC 2 cut(s) 408, 563
BspPI GGATC 1 cut(s) 298
BspTNI GGTCTC 1 cut(s) 199
BsrDI GCAATG 1 cut(s) 669
BsrI ACTGG 4 cut(s) 553, 640, 831, 922
BssECI CCNNGG 5 cut(s) 321, 566, 567, 790, 908
BssMI GATC 4 cut(s) 303, 502, 608, 865
BssNAI GTATAC 1 cut(s) 915
BssT1I CCWWGG 2 cut(s) 321, 908
Bst1107I GTATAC 1 cut(s) 915
Bst2UI CCWGG 1 cut(s) 791
Bst4CI ACNGT 1 cut(s) 689
BstAPI GCANNNNNTGC 2 cut(s) 853, 890
BstC8I GCNNGC 2 cut(s) 405, 733
BstDEI CTNAG 4 cut(s) 35, 141, 375, 894
BstF5I GGATG 1 cut(s) 774
BstKTI GATC 4 cut(s) 306, 505, 611, 868
BstMAI GTCTC 1 cut(s) 199
BstMBI GATC 4 cut(s) 303, 502, 608, 865
BstMWI GCNNNNNNNGC 6 cut(s) 332, 704, 779, 853, 884, 890
BstNI CCWGG 1 cut(s) 791
BstSCI CCNGG 3 cut(s) 565, 566, 789
BstV1I GCAGC 2 cut(s) 476, 896
BstZ17I GTATAC 1 cut(s) 915
BtgZI GCGATG 1 cut(s) 430
BtsCI GGATG 1 cut(s) 774
BtsIMutI CAGTG 1 cut(s) 824
BveI ACCTGC 2 cut(s) 408, 563
Cac8I GCNNGC 2 cut(s) 405, 733
CaiI CAGNNNCTG 1 cut(s) 548
Cfr13I GGNCC 2 cut(s) 92, 752
Cfr9I CCCGGG 1 cut(s) 566
Csp6I GTAC 1 cut(s) 428
CviAII CATG 2 cut(s) 498, 695
CviQI GTAC 1 cut(s) 428
DdeI CTNAG 4 cut(s) 35, 141, 375, 894
DpnI GATC 4 cut(s) 305, 504, 610, 867
DpnII GATC 4 cut(s) 303, 502, 608, 865
Eco130I CCWWGG 2 cut(s) 321, 908
Eco31I GGTCTC 1 cut(s) 199
Eco47I GGWCC 2 cut(s) 92, 752
Eco88I CYCGRG 1 cut(s) 566
EcoRII CCWGG 1 cut(s) 789
EcoT14I CCWWGG 2 cut(s) 321, 908
ErhI CCWWGG 2 cut(s) 321, 908
FaeI CATG 2 cut(s) 501, 698
FaqI GGGAC 3 cut(s) 16, 592, 807
FatI CATG 2 cut(s) 497, 694
FauI CCCGC 1 cut(s) 94
FblI GTMKAC 1 cut(s) 914
Fnu4HI GCNGC 2 cut(s) 465, 885
FokI GGATG 1 cut(s) 781
Fsp4HI GCNGC 2 cut(s) 465, 885
FspBI CTAG 3 cut(s) 422, 594, 881
GluI GCNGC 2 cut(s) 465, 885
GsuI CTGGAG 1 cut(s) 146
HapII CCGG 4 cut(s) 90, 112, 180, 567
Hin1II CATG 2 cut(s) 501, 698
HinfI GANTC 8 cut(s) 115, 121, 128, 170, 176, 183, 281, 580
HpaII CCGG 4 cut(s) 90, 112, 180, 567
HphI GGTGA 1 cut(s) 713
Hpy166II GTNNAC 3 cut(s) 394, 479, 915
Hpy188I TCNGA 6 cut(s) 17, 38, 120, 169, 175, 510
Hpy188III TCNNGA 6 cut(s) 68, 125, 180, 383, 391, 422
Hpy8I GTNNAC 3 cut(s) 394, 479, 915
HpyAV CCTTC 3 cut(s) 343, 452, 742
HpyCH4III ACNGT 1 cut(s) 689
HpyCH4IV ACGT 1 cut(s) 260
HpyCH4V TGCA 6 cut(s) 224, 253, 335, 371, 527, 856
HpyF10VI GCNNNNNNNGC 6 cut(s) 332, 704, 779, 853, 884, 890
HpyF3I CTNAG 4 cut(s) 35, 141, 375, 894
HpySE526I ACGT 1 cut(s) 260
Hsp92II CATG 2 cut(s) 501, 698
Kpn2I TCCGGA 1 cut(s) 179
Kzo9I GATC 4 cut(s) 303, 502, 608, 865
LmnI GCTCC 1 cut(s) 338
Lsp1109I GCAGC 2 cut(s) 476, 896
LweI GCATC 2 cut(s) 514, 821
MaeI CTAG 3 cut(s) 422, 594, 881
MaeII ACGT 1 cut(s) 260
MalI GATC 4 cut(s) 305, 504, 610, 867
MboI GATC 4 cut(s) 303, 502, 608, 865
MboII GAAGA 7 cut(s) 497, 533, 618, 655, 842, 845, 875
MluCI AATT 2 cut(s) 561, 682
MlyI GAGTC 4 cut(s) 109, 137, 164, 574
MmeI TCCRAC 2 cut(s) 192, 583
MnlI CCTC 8 cut(s) 44, 67, 148, 164, 370, 418, 633, 793
MroI TCCGGA 1 cut(s) 179
MslI CAYNNNNRTG 1 cut(s) 699
MspI CCGG 4 cut(s) 90, 112, 180, 567
MspR9I CCNGG 3 cut(s) 567, 568, 791
Mva1269I GAATGC 1 cut(s) 842
MvaI CCWGG 1 cut(s) 791
MwoI GCNNNNNNNGC 6 cut(s) 332, 704, 779, 853, 884, 890
NciI CCSGG 2 cut(s) 567, 568
NdeII GATC 4 cut(s) 303, 502, 608, 865
NlaIII CATG 2 cut(s) 501, 698
NlaIV GGNNCC 2 cut(s) 94, 753
PaqCI CACCTGC 1 cut(s) 563
PctI GAATGC 1 cut(s) 842
PfeI GAWTC 4 cut(s) 121, 176, 183, 281
PflMI CCANNNNNTGG 2 cut(s) 102, 548
PkrI GCNGC 2 cut(s) 466, 886
PleI GAGTC 4 cut(s) 109, 136, 164, 574
PpsI GAGTC 4 cut(s) 109, 136, 164, 574
Psp6I CCWGG 1 cut(s) 789
PspGI CCWGG 1 cut(s) 789
PspN4I GGNNCC 2 cut(s) 94, 753
PspPI GGNCC 2 cut(s) 92, 752
PstNI CAGNNNCTG 1 cut(s) 548
RsaI GTAC 1 cut(s) 429
RsaNI GTAC 1 cut(s) 428
RseI CAYNNNNRTG 1 cut(s) 699
SatI GCNGC 2 cut(s) 465, 885
Sau3AI GATC 4 cut(s) 303, 502, 608, 865
Sau96I GGNCC 2 cut(s) 92, 752
SchI GAGTC 4 cut(s) 109, 137, 164, 574
ScrFI CCNGG 3 cut(s) 567, 568, 791
SfaNI GCATC 2 cut(s) 514, 821
SinI GGWCC 2 cut(s) 92, 752
SmaI CCCGGG 1 cut(s) 568
SmiMI CAYNNNNRTG 1 cut(s) 699
SmlI CTYRAG 1 cut(s) 797
SmoI CTYRAG 1 cut(s) 797
Sse9I AATT 2 cut(s) 561, 682
SsiI CCGC 3 cut(s) 87, 307, 901
SspMI CTAG 3 cut(s) 422, 594, 881
StyD4I CCNGG 3 cut(s) 565, 566, 789
StyI CCWWGG 2 cut(s) 321, 908
TaaI ACNGT 1 cut(s) 689
TaiI ACGT 1 cut(s) 263
TasI AATT 2 cut(s) 561, 682
TfiI GAWTC 4 cut(s) 121, 176, 183, 281
TscAI CASTG 1 cut(s) 831
TseI GCWGC 2 cut(s) 464, 884
TspDTI ATGAA 1 cut(s) 273
TspGWI ACGGA 1 cut(s) 136
TspMI CCCGGG 1 cut(s) 566
TspRI CASTG 1 cut(s) 831
Van91I CCANNNNNTGG 2 cut(s) 102, 548
VpaK11BI GGWCC 2 cut(s) 92, 752
XbaI TCTAGA 1 cut(s) 421
XmaI CCCGGG 1 cut(s) 566
XmiI GTMKAC 1 cut(s) 914
XspI CTAG 3 cut(s) 422, 594, 881
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.