Rorug07G0209900

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0010481
Physical Location & Seq
Reverse (-)
18487416 .. 18488795
1380 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0209900.1

Sequence Viewer

Length: 939 bp
ATGTCAATGGATGTCAGTTCTGACTCAACAATAGAGATGGTGGTGCAAGATCAAAACTTGCCTCCGACCTCTCCTTCTCATCAGAATAGATGTACTAGAAGCAGTCAACAAGGTTCTTCCTCCTCTAAACTCAAAGGAGTGATACCACTGAAAGGTGGTATGTGGGGGGCAAGGATCACCTGTAACTACAAGCGATACAGGCTTGGGACATATGAAACAGAGATCGAGGCAGCTAAAGCATATGATAGAGCTGCAGTCAAGATGCCGCGAGCTCATTCCCTAAACTTCCACCGGATTAATTACAGTGTAGAAGAGAGCGCTTTCCAAAGTCAGTGCTCAATTGAGGAAGTTCTGAGGATGTTGCAGGATAAAACGTACTCATCGATGCTTCAGAATTTTATTTTGAATCATTCAACTTGTGTTGGATTTCATACAGAGGCCTTCATGAAGGAACAAGGGATTTCATATGACTTTCTCTTTAAGAAGGAACTGAGTCATATGGATGTCACTCACAAGTGCTTCCTGATTCAAGGGGATTATGCATCACTACATTCCCCCCCAATAGAAGATGAAGGCTGGAATAGCTTTGCCACTTTGTATGATATACATCGCCACTCATGGACATTTGGATGTTCATATTGGCAGAGTACACAAAGCTTTATTTTTACTAGTGGCTGGGGAGACTTTCTCGAGATGTATAACCTGAAGGAGAAAGACAAAATAATAATTTACAGATGCCAGTACCAAGGGGATGCTGTCGAGAGAAAATTTCACTTGATTAATGTGCTGAGAAGTACTGCAGAAAGTTCTGTTGTTGGTATGACTACAGAGCAAGATGTCGATTTAAGAGGAAGCTTGAACAAGGAGTTGGAGGCTGATTGCACTAGTGAGGAGAAAAAGAGAGGGTTTAAGCTCTTTGGTGTTGAGATTAGTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

312

Amino Acids

35.71

Weight (kDa)

6.13

Isoelectric Point (pI)

53.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 160 - 247 5.7e-09 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010481)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10780 AT1G10780
fragaria_vesca FvH4_5g29550 FvH4_5g29550
malus_domestica MD08G1228700.v1.1 MD15G1422700.v1.1
prunus_persica Prupe.1G568000_v2.0.a1
pyrus_communis pycom15g37460
rosa_chinensis RchiOBHm_Chr7g0222501
rosa_laevigata RLG00000002049
rosa_multiflora Rmu_ssc0000146.1_g000020
rosa_roxburghii Rroxscaffold_3G00236730
rosa_rugosa Rorug07G0209900 Rorug07G0210000 Rorug07G0210000
rosa_samantha Rh7AG351700 Rh7BG342300 Rh7CG369100 Rh7DG348400
rosa_wichuraiana Rw7G029690 Rw7G030020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 268
AciI CCGC 1 cut(s) 266
AclWI GGATC 1 cut(s) 182
AcsI RAATTY 2 cut(s) 394, 767
AcuI CTGAAG 2 cut(s) 374, 725
AfaI GTAC 5 cut(s) 94, 377, 649, 743, 796
AfeI AGCGCT 1 cut(s) 319
AfiI CCNNNNNNNGG 1 cut(s) 152
AgsI TTSAA 4 cut(s) 406, 414, 530, 859
AhlI ACTAGT 2 cut(s) 668, 884
AjuI GAANNNNNNNTTGG 2 cut(s) 851, 883
AluBI AGCT 7 cut(s) 233, 251, 272, 585, 657, 855, 913
AluI AGCT 7 cut(s) 233, 251, 272, 585, 657, 855, 913
Alw21I GWGCWC 2 cut(s) 274, 338
Alw26I GTCTC 1 cut(s) 675
AlwI GGATC 1 cut(s) 182
Ama87I CYCGRG 1 cut(s) 689
Aor51HI AGCGCT 1 cut(s) 319
AoxI GGCC 1 cut(s) 438
ApeKI GCWGC 2 cut(s) 230, 251
ApoI RAATTY 2 cut(s) 394, 767
AseI ATTAAT 2 cut(s) 297, 780
AspLEI GCGC 1 cut(s) 320
AsuHPI GGTGA 1 cut(s) 169
AvaI CYCGRG 1 cut(s) 689
BanII GRGCYC 1 cut(s) 274
Bbv12I GWGCWC 2 cut(s) 274, 338
BbvI GCAGC 2 cut(s) 238, 242
BccI CCATC 1 cut(s) 31
BcoDI GTCTC 1 cut(s) 675
BcuI ACTAGT 2 cut(s) 668, 884
BfaI CTAG 3 cut(s) 96, 669, 885
BfmI CTRYAG 3 cut(s) 252, 798, 825
BfoI RGCGCY 1 cut(s) 321
BisI GCNGC 3 cut(s) 231, 252, 266
BlsI GCNGC 3 cut(s) 232, 253, 267
BmcAI AGTACT 1 cut(s) 796
BmeT110I CYCGRG 1 cut(s) 689
BmsI GCATC 5 cut(s) 252, 375, 551, 725, 742
BplI GAGNNNNNCTC 2 cut(s) 672, 704
Bsa29I ATCGAT 1 cut(s) 383
BsaBI GATNNNNATC 1 cut(s) 606
BsaJI CCNNGG 1 cut(s) 745
BsaWI WCCGGW 1 cut(s) 291
Bsc4I CCNNNNNNNGG 1 cut(s) 152
Bse1I ACTGG 1 cut(s) 739
Bse8I GATNNNNATC 1 cut(s) 606
BseCI ATCGAT 1 cut(s) 383
BseDI CCNNGG 1 cut(s) 745
BseGI GGATG 5 cut(s) 16, 363, 508, 635, 757
BseJI GATNNNNATC 1 cut(s) 606
BseLI CCNNNNNNNGG 1 cut(s) 152
BseMII CTCAG 3 cut(s) 344, 482, 779
BseNI ACTGG 1 cut(s) 739
BseRI GAGGAG 2 cut(s) 112, 905
BseXI GCAGC 2 cut(s) 238, 242
BseYI CCCAGC 1 cut(s) 675
Bsh1236I CGCG 1 cut(s) 268
BshFI GGCC 1 cut(s) 440
BshVI ATCGAT 1 cut(s) 383
BsiHKAI GWGCWC 2 cut(s) 274, 338
BsiHKCI CYCGRG 1 cut(s) 689
BsiSI CCGG 1 cut(s) 292
BslFI GGGAC 1 cut(s) 220
BslI CCNNNNNNNGG 1 cut(s) 152
BsmAI GTCTC 1 cut(s) 675
BsmFI GGGAC 1 cut(s) 220
BsnI GGCC 1 cut(s) 440
BsoBI CYCGRG 1 cut(s) 689
Bsp1286I GDGCHC 2 cut(s) 274, 338
Bsp143I GATC 3 cut(s) 49, 174, 222
BspACI CCGC 1 cut(s) 266
BspANI GGCC 1 cut(s) 440
BspCNI CTCAG 3 cut(s) 345, 483, 780
BspDI ATCGAT 1 cut(s) 383
BspFNI CGCG 1 cut(s) 268
BspHI TCATGA 1 cut(s) 444
BspMAI CTGCAG 2 cut(s) 256, 802
BspPI GGATC 1 cut(s) 182
BsrI ACTGG 1 cut(s) 739
BssECI CCNNGG 1 cut(s) 745
BssMI GATC 3 cut(s) 49, 174, 222
BssT1I CCWWGG 1 cut(s) 745
Bst4CI ACNGT 1 cut(s) 305
Bst6I CTCTTC 1 cut(s) 306
BstC8I GCNNGC 1 cut(s) 270
BstDEI CTNAG 3 cut(s) 353, 491, 788
BstF5I GGATG 5 cut(s) 16, 363, 508, 635, 757
BstFNI CGCG 1 cut(s) 268
BstH2I RGCGCY 1 cut(s) 321
BstHHI GCGC 1 cut(s) 320
BstKTI GATC 3 cut(s) 52, 177, 225
BstMAI GTCTC 1 cut(s) 675
BstMBI GATC 3 cut(s) 49, 174, 222
BstMWI GCNNNNNNNGC 3 cut(s) 199, 236, 582
BstSFI CTRYAG 3 cut(s) 252, 798, 825
BstUI CGCG 1 cut(s) 268
BstV1I GCAGC 2 cut(s) 238, 242
Bsu15I ATCGAT 1 cut(s) 383
BsuRI GGCC 1 cut(s) 440
BsuTUI ATCGAT 1 cut(s) 383
BtgZI GCGATG 1 cut(s) 593
BtsCI GGATG 5 cut(s) 16, 363, 508, 635, 757
BtsIMutI CAGTG 3 cut(s) 146, 310, 338
Cac8I GCNNGC 1 cut(s) 270
CciI TCATGA 1 cut(s) 444
CfoI GCGC 1 cut(s) 320
ClaI ATCGAT 1 cut(s) 383
Csp6I GTAC 5 cut(s) 93, 376, 648, 742, 795
CviAII CATG 2 cut(s) 445, 618
CviQI GTAC 5 cut(s) 93, 376, 648, 742, 795
DdeI CTNAG 3 cut(s) 353, 491, 788
DpnI GATC 3 cut(s) 51, 176, 224
DpnII GATC 3 cut(s) 49, 174, 222
Eam1104I CTCTTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 306
Ecl136II GAGCTC 1 cut(s) 272
Eco130I CCWWGG 1 cut(s) 745
Eco147I AGGCCT 1 cut(s) 440
Eco24I GRGCYC 1 cut(s) 274
Eco47III AGCGCT 1 cut(s) 319
Eco53kI GAGCTC 1 cut(s) 272
Eco57I CTGAAG 2 cut(s) 374, 725
Eco88I CYCGRG 1 cut(s) 689
EcoICRI GAGCTC 1 cut(s) 272
EcoT14I CCWWGG 1 cut(s) 745
EcoT22I ATGCAT 1 cut(s) 544
EcoT38I GRGCYC 1 cut(s) 274
ErhI CCWWGG 1 cut(s) 745
FaeI CATG 2 cut(s) 448, 621
FaqI GGGAC 1 cut(s) 220
FatI CATG 2 cut(s) 444, 617
FauNDI CATATG 4 cut(s) 211, 241, 466, 498
Fnu4HI GCNGC 3 cut(s) 231, 252, 266
FokI GGATG 5 cut(s) 23, 370, 515, 642, 764
FriOI GRGCYC 1 cut(s) 274
Fsp4HI GCNGC 3 cut(s) 231, 252, 266
FspBI CTAG 3 cut(s) 96, 669, 885
GlaI GCGC 1 cut(s) 319
GluI GCNGC 3 cut(s) 231, 252, 266
GsaI CCCAGC 1 cut(s) 679
HaeII RGCGCY 1 cut(s) 321
HaeIII GGCC 1 cut(s) 440
HapII CCGG 1 cut(s) 292
HhaI GCGC 1 cut(s) 320
Hin1II CATG 2 cut(s) 448, 621
Hin6I GCGC 1 cut(s) 318
HinP1I GCGC 1 cut(s) 318
HincII GTYRAC 1 cut(s) 107
HindII GTYRAC 1 cut(s) 107
HindIII AAGCTT 2 cut(s) 655, 853
HinfI GANTC 4 cut(s) 23, 406, 493, 526
HpaII CCGG 1 cut(s) 292
HphI GGTGA 1 cut(s) 169
Hpy166II GTNNAC 2 cut(s) 107, 650
Hpy188I TCNGA 5 cut(s) 22, 66, 84, 354, 393
Hpy188III TCNNGA 6 cut(s) 259, 445, 523, 689, 691, 760
Hpy8I GTNNAC 2 cut(s) 107, 650
HpyAV CCTTC 6 cut(s) 84, 442, 451, 478, 566, 700
HpyCH4III ACNGT 1 cut(s) 305
HpyCH4IV ACGT 1 cut(s) 374
HpyCH4V TGCA 6 cut(s) 46, 254, 364, 542, 800, 882
HpyF10VI GCNNNNNNNGC 3 cut(s) 199, 236, 582
HpyF3I CTNAG 3 cut(s) 353, 491, 788
HpySE526I ACGT 1 cut(s) 374
Hsp92II CATG 2 cut(s) 448, 621
HspAI GCGC 1 cut(s) 318
Kzo9I GATC 3 cut(s) 49, 174, 222
LpnPI CCDG 9 cut(s) 184, 193, 305, 350, 536, 562, 661, 716, 752
Lsp1109I GCAGC 2 cut(s) 238, 242
LweI GCATC 5 cut(s) 252, 375, 551, 725, 742
MaeI CTAG 3 cut(s) 96, 669, 885
MaeII ACGT 1 cut(s) 374
MaeIII GTNAC 2 cut(s) 182, 505
MalI GATC 3 cut(s) 51, 176, 224
MboI GATC 3 cut(s) 49, 174, 222
MboII GAAGA 3 cut(s) 108, 323, 578
MfeI CAATTG 1 cut(s) 339
MhlI GDGCHC 2 cut(s) 274, 338
MluCI AATT 5 cut(s) 298, 339, 394, 726, 767
MlyI GAGTC 2 cut(s) 17, 502
MmeI TCCRAC 3 cut(s) 89, 403, 849
Mph1103I ATGCAT 1 cut(s) 544
MseI TTAA 6 cut(s) 297, 480, 780, 845, 909, 937
MslI CAYNNNNRTG 2 cut(s) 501, 628
MspI CCGG 1 cut(s) 292
MunI CAATTG 1 cut(s) 339
MvnI CGCG 1 cut(s) 268
MwoI GCNNNNNNNGC 3 cut(s) 199, 236, 582
NdeI CATATG 4 cut(s) 211, 241, 466, 498
NdeII GATC 3 cut(s) 49, 174, 222
NlaIII CATG 2 cut(s) 448, 621
NmuCI GTSAC 1 cut(s) 505
NsiI ATGCAT 1 cut(s) 544
PaeR7I CTCGAG 1 cut(s) 689
PagI TCATGA 1 cut(s) 444
PceI AGGCCT 1 cut(s) 440
PcsI WCGNNNNNNNCGW 1 cut(s) 380
PfeI GAWTC 2 cut(s) 406, 526
PkrI GCNGC 3 cut(s) 232, 253, 267
PleI GAGTC 2 cut(s) 17, 501
PpsI GAGTC 2 cut(s) 17, 501
PshBI ATTAAT 2 cut(s) 297, 780
Psp124BI GAGCTC 1 cut(s) 274
PspFI CCCAGC 1 cut(s) 675
PstI CTGCAG 2 cut(s) 256, 802
RsaI GTAC 5 cut(s) 94, 377, 649, 743, 796
RsaNI GTAC 5 cut(s) 93, 376, 648, 742, 795
RseI CAYNNNNRTG 2 cut(s) 501, 628
SacI GAGCTC 1 cut(s) 274
SaqAI TTAA 6 cut(s) 297, 480, 780, 845, 909, 937
SatI GCNGC 3 cut(s) 231, 252, 266
Sau3AI GATC 3 cut(s) 49, 174, 222
ScaI AGTACT 1 cut(s) 796
SchI GAGTC 2 cut(s) 17, 502
SduI GDGCHC 2 cut(s) 274, 338
SfaNI GCATC 5 cut(s) 252, 375, 551, 725, 742
SfcI CTRYAG 3 cut(s) 252, 798, 825
Sfr274I CTCGAG 1 cut(s) 689
SlaI CTCGAG 1 cut(s) 689
SmiMI CAYNNNNRTG 2 cut(s) 501, 628
SmlI CTYRAG 1 cut(s) 689
SmoI CTYRAG 1 cut(s) 689
SpeI ACTAGT 2 cut(s) 668, 884
Sse9I AATT 5 cut(s) 298, 339, 394, 726, 767
SseBI AGGCCT 1 cut(s) 440
SsiI CCGC 1 cut(s) 266
SspMI CTAG 3 cut(s) 96, 669, 885
SstI GAGCTC 1 cut(s) 274
StuI AGGCCT 1 cut(s) 440
StyI CCWWGG 1 cut(s) 745
TaaI ACNGT 1 cut(s) 305
TaiI ACGT 1 cut(s) 377
TaqI TCGA 5 cut(s) 225, 383, 690, 759, 840
TasI AATT 5 cut(s) 298, 339, 394, 726, 767
TatI WGTACW 3 cut(s) 92, 647, 794
TauI GCSGC 1 cut(s) 268
TfiI GAWTC 2 cut(s) 406, 526
Tru1I TTAA 6 cut(s) 297, 480, 780, 845, 909, 937
Tru9I TTAA 6 cut(s) 297, 480, 780, 845, 909, 937
TscAI CASTG 3 cut(s) 153, 310, 338
TseFI GTSAC 1 cut(s) 505
TseI GCWGC 2 cut(s) 230, 251
Tsp45I GTSAC 1 cut(s) 505
TspDTI ATGAA 7 cut(s) 228, 419, 433, 453, 461, 585, 624
TspRI CASTG 3 cut(s) 153, 310, 338
VspI ATTAAT 2 cut(s) 297, 780
XapI RAATTY 2 cut(s) 394, 767
XhoI CTCGAG 1 cut(s) 689
XspI CTAG 3 cut(s) 96, 669, 885
ZrmI AGTACT 1 cut(s) 796
Zsp2I ATGCAT 1 cut(s) 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.