FvH4_5g29550

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0010481
Physical Location & Seq
Reverse (-)
20489137 .. 20491823
2687 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g29550.t2

Sequence Viewer

Length: 1260 bp
ATGGAGTCCCTCCCAGATGCTATTGTTCAATACATATTGTCGTACATGAATAATGCCCGAGATGTGGCGCTTTGTAATTGTGTATCTAAGCGATGGAAGGATTCAATTCCGTACATCCGGAGTCTTATCTTCCCTAGGGGCTCCTTTGATAATCTCACAGGCAGTGACACTCCCGATGAAATTGTATTGAAGATGATTTCTCTGATTGAAAGATTGGAAAGTCTTGTTGTGTATAGCCCATTTTCGGGTGCTGGGCTTGCGTCATGGCTGACAGTCATAGGCCCCTCCCTTAGGTATCTTGAGCTTCGAATGGACAATCTTGGTGAACAAGACATCTTTAATGAACGCCCTTCGAAATTGGATTGCTTAACTGCTGCAAAGAGTTTGGAGTCATTAAAGCTTTGGGGAGTCTTAATGACCTGTTCCCCCAAGTGGGATGTCTTCGAGAAACTCAAGAACCTTGAAATTGTTGGTGCAAGGGTGGAGGATCCTGCGTTGTCAACTGTGCTTCGGGCCTGTCCTAACCTGACCAAACTGTTGCTGCTTGGTGTTGACGGAGTTGTTGCAGTTTCAATTGAGTTGCCACTTCTGGAGCAGTGTAAGCTAGACTTCTACGGCTTGGGAAATTGTTCATTTTCTATGAACTGCCCAAAAATTGAAGTCCTTGAGGTGCAAGGCTGTAGTTGGATTCGGGTTCAGAAGACAAAGCATTTGAGGAATCTTTCGATTGCCAATACAGCAGGGAGAGTGTACATGGTTGATTTTGATAAACTTGTGGCTCTGGAGTCCTTATCCATCAGGGGTGTCCAGTGGTGTTGGGGTGCAATAAGCAGTATGCTACAATGGGCAAGTGAAGTGAAGCACCTCTTTATGAAGGTGGAATTCACAGGAGATTTTGAGACTCTTCATCCCTTTCCAGAGGTTGACTTTGTTGATTTTTTCAATAATCATCCCAGGCTGCAAAGTTTTGACATTCATGGAGCAATGTTTGCTGCTCTTTGTCAGAAGAACAGTCTGAAAAATGTTGATTCAGAATTTGTAATTCCTTGTCTGGAGGAAGTGGTGATCACAGTGCGATCACCGCTGAATGCTGAACAGAAAATGAGCACTCTAGAATCCCTGTTGAAGTATGGGAAGAATCTCAAGAGCATGGTGATCAAGGTTCTTCAGATGAAGAGCAACCATAGCAGTGCAGATGATTTCTTTGATGAGATATGCAGGTTTACATGCATGAACCGAAAGATAGTTAGAATCGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

420

Amino Acids

47.38

Weight (kDa)

5.83

Isoelectric Point (pI)

39.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 5 - 38 5.9e-06 F-box-like
LRR_At5g56370 PF24758 125 - 205 9.2e-06 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010481)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10780 AT1G10780
fragaria_vesca FvH4_5g29550 FvH4_5g29550
malus_domestica MD08G1228700.v1.1 MD15G1422700.v1.1
prunus_persica Prupe.1G568000_v2.0.a1
pyrus_communis pycom15g37460
rosa_chinensis RchiOBHm_Chr7g0222501
rosa_laevigata RLG00000002049
rosa_multiflora Rmu_ssc0000146.1_g000020
rosa_roxburghii Rroxscaffold_3G00236730
rosa_rugosa Rorug07G0209900 Rorug07G0210000 Rorug07G0210000
rosa_samantha Rh7AG351700 Rh7BG342300 Rh7CG369100 Rh7DG348400
rosa_wichuraiana Rw7G029690 Rw7G030020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1209
AccIII TCCGGA 1 cut(s) 117
AciI CCGC 1 cut(s) 1082
AclWI GGATC 2 cut(s) 482, 495
AcsI RAATTY 2 cut(s) 881, 1034
AcuI CTGAAG 1 cut(s) 1151
AfaI GTAC 3 cut(s) 44, 113, 752
AfiI CCNNNNNNNGG 6 cut(s) 64, 244, 245, 291, 432, 433
AgsI TTSAA 9 cut(s) 29, 105, 190, 209, 464, 573, 659, 943, 1126
AjnI CCWGG 1 cut(s) 953
AluBI AGCT 3 cut(s) 304, 400, 604
AluI AGCT 3 cut(s) 304, 400, 604
Alw21I GWGCWC 1 cut(s) 1109
Alw26I GTCTC 1 cut(s) 893
AlwI GGATC 2 cut(s) 482, 495
Ama87I CYCGRG 1 cut(s) 57
Aor13HI TCCGGA 1 cut(s) 117
AoxI GGCC 2 cut(s) 280, 513
ApeKI GCWGC 4 cut(s) 374, 541, 958, 992
ApoI RAATTY 2 cut(s) 881, 1034
ArsI GACNNNNNNTTYG 2 cut(s) 694, 726
Asp700I GAANNNNTTC 1 cut(s) 628
AspA2I CCTAGG 1 cut(s) 134
AspLEI GCGC 1 cut(s) 70
AspS9I GGNCC 2 cut(s) 281, 513
AsuHPI GGTGA 4 cut(s) 335, 1071, 1075, 1165
AsuII TTCGAA 2 cut(s) 307, 353
AvaI CYCGRG 1 cut(s) 57
AvrII CCTAGG 1 cut(s) 134
AxyI CCTNAGG 1 cut(s) 290
BamHI GGATCC 1 cut(s) 487
BanII GRGCYC 1 cut(s) 143
BbsI GAAGAC 2 cut(s) 433, 707
Bbv12I GWGCWC 1 cut(s) 1109
BbvI GCAGC 4 cut(s) 361, 528, 945, 979
BccI CCATC 2 cut(s) 87, 803
BceAI ACGGC 1 cut(s) 631
BciT130I CCWGG 1 cut(s) 955
BclI TGATCA 2 cut(s) 1065, 1155
BcoDI GTCTC 1 cut(s) 893
BfaI CTAG 3 cut(s) 135, 605, 1112
BfmI CTRYAG 1 cut(s) 679
BfoI RGCGCY 1 cut(s) 71
BfuAI ACCTGC 1 cut(s) 1209
BisI GCNGC 4 cut(s) 375, 542, 959, 993
BlnI CCTAGG 1 cut(s) 134
BlsI GCNGC 4 cut(s) 376, 543, 960, 994
Bme1390I CCNGG 1 cut(s) 955
BmeT110I CYCGRG 1 cut(s) 57
BmgT120I GGNCC 2 cut(s) 281, 513
BmiI GGNNCC 3 cut(s) 142, 283, 489
BmrFI CCNGG 1 cut(s) 955
BmsI GCATC 1 cut(s) 7
BpiI GAAGAC 2 cut(s) 433, 707
BpmI CTGGAG 3 cut(s) 611, 803, 1073
Bpu14I TTCGAA 2 cut(s) 307, 353
BpuEI CTTGAG 4 cut(s) 320, 437, 686, 1127
BsaJI CCNNGG 2 cut(s) 134, 953
BsaWI WCCGGW 1 cut(s) 117
Bsc4I CCNNNNNNNGG 6 cut(s) 64, 244, 245, 291, 432, 433
Bse1I ACTGG 1 cut(s) 808
Bse21I CCTNAGG 1 cut(s) 290
Bse3DI GCAATG 1 cut(s) 990
BseAI TCCGGA 1 cut(s) 117
BseBI CCWGG 1 cut(s) 955
BseDI CCNNGG 2 cut(s) 134, 953
BseGI GGATG 4 cut(s) 114, 442, 907, 949
BseLI CCNNNNNNNGG 6 cut(s) 64, 244, 245, 291, 432, 433
BseMI GCAATG 1 cut(s) 990
BseNI ACTGG 1 cut(s) 808
BseXI GCAGC 4 cut(s) 361, 528, 945, 979
BseYI CCCAGC 1 cut(s) 251
BsgI GTGCAG 1 cut(s) 1212
BshFI GGCC 2 cut(s) 282, 515
BsiHKAI GWGCWC 1 cut(s) 1109
BsiHKCI CYCGRG 1 cut(s) 57
BsiSI CCGG 1 cut(s) 118
BslI CCNNNNNNNGG 6 cut(s) 64, 244, 245, 291, 432, 433
BsmAI GTCTC 1 cut(s) 893
BsmI GAATGC 1 cut(s) 1093
BsnI GGCC 2 cut(s) 282, 515
BsoBI CYCGRG 1 cut(s) 57
Bsp119I TTCGAA 2 cut(s) 307, 353
Bsp1286I GDGCHC 2 cut(s) 143, 1109
Bsp13I TCCGGA 1 cut(s) 117
Bsp1407I TGTACA 1 cut(s) 750
Bsp143I GATC 4 cut(s) 487, 1065, 1076, 1155
BspACI CCGC 1 cut(s) 1082
BspANI GGCC 2 cut(s) 282, 515
BspEI TCCGGA 1 cut(s) 117
BspLI GGNNCC 3 cut(s) 142, 283, 489
BspMI ACCTGC 1 cut(s) 1209
BspPI GGATC 2 cut(s) 482, 495
BspQI GCTCTTC 1 cut(s) 1169
BspT104I TTCGAA 2 cut(s) 307, 353
BsrDI GCAATG 1 cut(s) 990
BsrGI TGTACA 1 cut(s) 750
BsrI ACTGG 1 cut(s) 808
BssECI CCNNGG 2 cut(s) 134, 953
BssMI GATC 4 cut(s) 487, 1065, 1076, 1155
BssT1I CCWWGG 1 cut(s) 134
Bst2UI CCWGG 1 cut(s) 955
Bst4CI ACNGT 5 cut(s) 274, 505, 537, 1013, 1072
Bst6I CTCTTC 2 cut(s) 909, 1169
BstAPI GCANNNNNTGC 1 cut(s) 989
BstAUI TGTACA 1 cut(s) 750
BstBI TTCGAA 2 cut(s) 307, 353
BstC8I GCNNGC 1 cut(s) 258
BstDEI CTNAG 2 cut(s) 87, 290
BstENI CCTNNNNNAGG 1 cut(s) 289
BstF5I GGATG 4 cut(s) 114, 442, 907, 949
BstH2I RGCGCY 1 cut(s) 71
BstHHI GCGC 1 cut(s) 70
BstKTI GATC 4 cut(s) 490, 1068, 1079, 1158
BstMAI GTCTC 1 cut(s) 893
BstMBI GATC 4 cut(s) 487, 1065, 1076, 1155
BstMWI GCNNNNNNNGC 6 cut(s) 257, 601, 737, 989, 1081, 1185
BstNI CCWGG 1 cut(s) 955
BstNSI RCATGY 1 cut(s) 1230
BstSCI CCNGG 1 cut(s) 953
BstSFI CTRYAG 1 cut(s) 679
BstV1I GCAGC 4 cut(s) 361, 528, 945, 979
BstV2I GAAGAC 2 cut(s) 433, 707
BstX2I RGATCY 1 cut(s) 487
BstYI RGATCY 1 cut(s) 487
Bsu36I CCTNAGG 1 cut(s) 290
BsuRI GGCC 2 cut(s) 282, 515
BtgZI GCGATG 1 cut(s) 106
BtsCI GGATG 4 cut(s) 114, 442, 907, 949
BtsI GCAGTG 3 cut(s) 169, 602, 1195
BtsIMutI CAGTG 5 cut(s) 169, 602, 815, 1077, 1195
BveI ACCTGC 1 cut(s) 1209
Cac8I GCNNGC 1 cut(s) 258
CfoI GCGC 1 cut(s) 70
Cfr13I GGNCC 2 cut(s) 281, 513
CseI GACGC 1 cut(s) 249
Csp6I GTAC 3 cut(s) 43, 112, 751
CviAII CATG 7 cut(s) 46, 264, 754, 977, 1150, 1227, 1231
CviQI GTAC 3 cut(s) 43, 112, 751
DdeI CTNAG 2 cut(s) 87, 290
DpnI GATC 4 cut(s) 489, 1067, 1078, 1157
DpnII GATC 4 cut(s) 487, 1065, 1076, 1155
Eam1104I CTCTTC 2 cut(s) 909, 1169
EarI CTCTTC 2 cut(s) 909, 1169
Eco130I CCWWGG 1 cut(s) 134
Eco24I GRGCYC 1 cut(s) 143
Eco57I CTGAAG 1 cut(s) 1151
Eco81I CCTNAGG 1 cut(s) 290
Eco88I CYCGRG 1 cut(s) 57
EcoNI CCTNNNNNAGG 1 cut(s) 289
EcoO109I RGGNCCY 1 cut(s) 281
EcoRI GAATTC 1 cut(s) 881
EcoRII CCWGG 1 cut(s) 953
EcoT14I CCWWGG 1 cut(s) 134
EcoT22I ATGCAT 1 cut(s) 1232
EcoT38I GRGCYC 1 cut(s) 143
ErhI CCWWGG 1 cut(s) 134
FaeI CATG 7 cut(s) 49, 267, 757, 980, 1153, 1230, 1234
FalI AAGNNNNNCTT 4 cut(s) 593, 625, 851, 883
FatI CATG 7 cut(s) 45, 263, 753, 976, 1149, 1226, 1230
FbaI TGATCA 2 cut(s) 1065, 1155
Fnu4HI GCNGC 4 cut(s) 375, 542, 959, 993
FokI GGATG 4 cut(s) 101, 449, 894, 936
FriOI GRGCYC 1 cut(s) 143
Fsp4HI GCNGC 4 cut(s) 375, 542, 959, 993
FspBI CTAG 3 cut(s) 135, 605, 1112
GlaI GCGC 1 cut(s) 69
GluI GCNGC 4 cut(s) 375, 542, 959, 993
GsaI CCCAGC 1 cut(s) 255
GsuI CTGGAG 3 cut(s) 611, 803, 1073
HaeII RGCGCY 1 cut(s) 71
HaeIII GGCC 2 cut(s) 282, 515
HapII CCGG 1 cut(s) 118
HgaI GACGC 1 cut(s) 249
HhaI GCGC 1 cut(s) 70
Hin1II CATG 7 cut(s) 49, 267, 757, 980, 1153, 1230, 1234
Hin6I GCGC 1 cut(s) 68
HinP1I GCGC 1 cut(s) 68
HincII GTYRAC 3 cut(s) 501, 553, 925
HindII GTYRAC 3 cut(s) 501, 553, 925
HindIII AAGCTT 1 cut(s) 398
HpaII CCGG 1 cut(s) 118
HphI GGTGA 4 cut(s) 335, 1071, 1075, 1165
Hpy166II GTNNAC 6 cut(s) 326, 501, 553, 751, 925, 1224
Hpy188I TCNGA 6 cut(s) 204, 699, 1005, 1017, 1033, 1170
Hpy8I GTNNAC 6 cut(s) 326, 501, 553, 751, 925, 1224
HpyAV CCTTC 3 cut(s) 91, 360, 868
HpyCH4III ACNGT 5 cut(s) 274, 505, 537, 1013, 1072
HpyCH4V TGCA 9 cut(s) 377, 476, 566, 673, 824, 961, 1193, 1218, 1230
HpyF10VI GCNNNNNNNGC 6 cut(s) 257, 601, 737, 989, 1081, 1185
HpyF3I CTNAG 2 cut(s) 87, 290
Hsp92II CATG 7 cut(s) 49, 267, 757, 980, 1153, 1230, 1234
HspAI GCGC 1 cut(s) 68
Kpn2I TCCGGA 1 cut(s) 117
Ksp22I TGATCA 2 cut(s) 1065, 1155
Kzo9I GATC 4 cut(s) 487, 1065, 1076, 1155
LguI GCTCTTC 1 cut(s) 1169
LmnI GCTCC 3 cut(s) 146, 592, 980
Lsp1109I GCAGC 4 cut(s) 361, 528, 945, 979
LweI GCATC 1 cut(s) 7
MaeI CTAG 3 cut(s) 135, 605, 1112
MaeIII GTNAC 1 cut(s) 164
MalI GATC 4 cut(s) 489, 1067, 1078, 1157
MboI GATC 4 cut(s) 487, 1065, 1076, 1155
MboII GAAGA 9 cut(s) 121, 202, 433, 712, 896, 1018, 1147, 1157, 1186
MfeI CAATTG 1 cut(s) 573
MflI RGATCY 1 cut(s) 487
MhlI GDGCHC 2 cut(s) 143, 1109
MlyI GAGTC 6 cut(s) 14, 130, 398, 417, 794, 895
MmeI TCCRAC 1 cut(s) 665
MnlI CCTC 8 cut(s) 20, 295, 478, 661, 708, 875, 913, 1048
Mph1103I ATGCAT 1 cut(s) 1232
MroI TCCGGA 1 cut(s) 117
MroXI GAANNNNTTC 1 cut(s) 628
MseI TTAA 4 cut(s) 339, 368, 395, 413
MslI CAYNNNNRTG 1 cut(s) 1188
MspA1I CMGCKG 1 cut(s) 1084
MspI CCGG 1 cut(s) 118
MspR9I CCNGG 1 cut(s) 955
MunI CAATTG 1 cut(s) 573
Mva1269I GAATGC 1 cut(s) 1093
MvaI CCWGG 1 cut(s) 955
MwoI GCNNNNNNNGC 6 cut(s) 257, 601, 737, 989, 1081, 1185
NdeII GATC 4 cut(s) 487, 1065, 1076, 1155
NlaIII CATG 7 cut(s) 49, 267, 757, 980, 1153, 1230, 1234
NlaIV GGNNCC 3 cut(s) 142, 283, 489
NmuCI GTSAC 1 cut(s) 164
NsiI ATGCAT 1 cut(s) 1232
NspI RCATGY 1 cut(s) 1230
NspV TTCGAA 2 cut(s) 307, 353
PciSI GCTCTTC 1 cut(s) 1169
PctI GAATGC 1 cut(s) 1093
PdmI GAANNNNTTC 1 cut(s) 628
PfeI GAWTC 7 cut(s) 101, 688, 718, 1028, 1115, 1138, 1251
PkrI GCNGC 4 cut(s) 376, 543, 960, 994
PleI GAGTC 6 cut(s) 13, 129, 397, 416, 793, 895
PpsI GAGTC 6 cut(s) 13, 129, 397, 416, 793, 895
Psp6I CCWGG 1 cut(s) 953
PspFI CCCAGC 1 cut(s) 251
PspGI CCWGG 1 cut(s) 953
PspN4I GGNNCC 3 cut(s) 142, 283, 489
PspPI GGNCC 2 cut(s) 281, 513
PsuI RGATCY 1 cut(s) 487
RsaI GTAC 3 cut(s) 44, 113, 752
RsaNI GTAC 3 cut(s) 43, 112, 751
RseI CAYNNNNRTG 1 cut(s) 1188
SapI GCTCTTC 1 cut(s) 1169
SaqAI TTAA 4 cut(s) 339, 368, 395, 413
SatI GCNGC 4 cut(s) 375, 542, 959, 993
Sau3AI GATC 4 cut(s) 487, 1065, 1076, 1155
Sau96I GGNCC 2 cut(s) 281, 513
SchI GAGTC 6 cut(s) 14, 130, 398, 417, 794, 895
ScrFI CCNGG 1 cut(s) 955
SduI GDGCHC 2 cut(s) 143, 1109
SfaNI GCATC 1 cut(s) 7
SfcI CTRYAG 1 cut(s) 679
SfuI TTCGAA 2 cut(s) 307, 353
SmiMI CAYNNNNRTG 1 cut(s) 1188
SmlI CTYRAG 4 cut(s) 299, 452, 665, 1142
SmoI CTYRAG 4 cut(s) 299, 452, 665, 1142
SsiI CCGC 1 cut(s) 1082
SspMI CTAG 3 cut(s) 135, 605, 1112
StyD4I CCNGG 1 cut(s) 953
StyI CCWWGG 1 cut(s) 134
TaaI ACNGT 5 cut(s) 274, 505, 537, 1013, 1072
TaqI TCGA 5 cut(s) 307, 353, 444, 725, 1254
TatI WGTACW 1 cut(s) 750
TfiI GAWTC 7 cut(s) 101, 688, 718, 1028, 1115, 1138, 1251
Tru1I TTAA 4 cut(s) 339, 368, 395, 413
Tru9I TTAA 4 cut(s) 339, 368, 395, 413
TscAI CASTG 5 cut(s) 169, 602, 815, 1077, 1195
TseFI GTSAC 1 cut(s) 164
TseI GCWGC 4 cut(s) 374, 541, 958, 992
Tsp45I GTSAC 1 cut(s) 164
TspGWI ACGGA 2 cut(s) 99, 570
TspRI CASTG 5 cut(s) 169, 602, 815, 1077, 1195
XagI CCTNNNNNAGG 1 cut(s) 289
XapI RAATTY 2 cut(s) 881, 1034
XbaI TCTAGA 1 cut(s) 1111
XceI RCATGY 1 cut(s) 1230
XmaJI CCTAGG 1 cut(s) 134
XmnI GAANNNNTTC 1 cut(s) 628
XspI CTAG 3 cut(s) 135, 605, 1112
Zsp2I ATGCAT 1 cut(s) 1232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.