Prupe.1G568000_v2.0.a1

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0010481
Physical Location & Seq
Forward (+)
46332106 .. 46334814
2709 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G568000.1

Sequence Viewer

Length: 1260 bp
ATGGACTCTCTCCCTGATGCTATTGTTCAATACATATTGTCGCATATGAATAATGCCCGAGACGTTGCAATATGTAATTGTGTATCCAAACGATGGAAGGACTCAATCCCTTATATAAGGAGCCTTTACTTCCCCAGAAACTCCTTTGATAACCATTTAGGCAGAGACAGCCCTGATGACATTGTATTGAAGATGATTTCTCTGATTGAAAAATTAGAAAATCTGGTTGTGTATAGCCCATTCTCAGCTGCTGGCCTTGCTTCGTGGTTAATGCTCATAGGTCCAACTCTTAGGTATCTTGAGCTCCGAATGGACAATCTTGCTGAACAGCAGGCCTGTCATGAAATCCCTTCAAAATTGGATTGCTTAATAGCTGCAGAAAATTTGGAGTCTTTAAAACTTTGGGGAGTCTTAATGACCCGCTCCCCCAATTGGGATGTCTTCCAGAAACTCAGTAACCTTGAAATTGTTGGTGCAAGATTGGAGGATCCTGCGTTATCAACTGTGCTTCAGGCTTGTCCTAATCTGACCAACTTGTTGCTGCTTGGTTGTGAAGGAGTGAGATCAGTTTCGATCGAGTTGCCATATCTGGAGCAGTGCAAGTTGGATTTTTATGGCCTGGGAAACTGCTCATTTTCCATGGAGTGCCCAAAAATTAAAGTGCTTGAGGTGCAAGGTTGCAGTTGGATTCGGGTTCGTGAGGCAAAGTATTTGAGGAATCTTTCGATTGCCAATAATGCAGGGAGAGTCTACATGGTTGATTTTGAAAAACTTGGGGCTCTGGAGTTCTTATCCATTAGGGGTGTCCAGTGGTGTTGGGACGCAATAAGCAATATGCTTCAATGGGCAAGTGAAGTGAAGCACCTATTTATGAAGGTGGAATTCACAGGGGATTTTGAAACCCTTCAACCTTTTCCAGAGGTTGACTTCGTTGATTTTTTCAATAACCATCCCAAGCTGCAAAAGTTTGATATCCATGGAGCCATGTTTGCTGCTCTTTGTCAGAAGAACAGTCTGAAAAATGTTGATTCAGGATTTGCAATTCCTTGTCTGGAAGAAGTGGTGATCACCGTGAGATCACCACTGAATGCTGAACAGAAAATGAGCACTCTTGAGTCCTTGTTGAAGTATGGGAAGAATCTAAAGGCAATTGTAATAAAGATTCTTCAGATGAAGAGCAGTCATAGCAGTGCAGATGATTTCTTCGATGAGATTTGCAGGTTTAGATACATGAACCGCAAGATAGTTAGAATAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

420

Amino Acids

47.81

Weight (kDa)

5.91

Isoelectric Point (pI)

43.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010481)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10780 AT1G10780
fragaria_vesca FvH4_5g29550 FvH4_5g29550
malus_domestica MD08G1228700.v1.1 MD15G1422700.v1.1
prunus_persica Prupe.1G568000_v2.0.a1
pyrus_communis pycom15g37460
rosa_chinensis RchiOBHm_Chr7g0222501
rosa_laevigata RLG00000002049
rosa_multiflora Rmu_ssc0000146.1_g000020
rosa_roxburghii Rroxscaffold_3G00236730
rosa_rugosa Rorug07G0209900 Rorug07G0210000 Rorug07G0210000
rosa_samantha Rh7AG351700 Rh7BG342300 Rh7CG369100 Rh7DG348400
rosa_wichuraiana Rw7G029690 Rw7G030020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1209
AccB7I CCANNNNNTGG 1 cut(s) 93
AccBSI CCGCTC 1 cut(s) 423
AccI GTMKAC 1 cut(s) 750
AciI CCGC 2 cut(s) 421, 1237
AclWI GGATC 2 cut(s) 482, 495
AcsI RAATTY 2 cut(s) 382, 881
AcuI CTGAAG 2 cut(s) 494, 1151
AfiI CCNNNNNNNGG 3 cut(s) 93, 432, 433
AjnI CCWGG 1 cut(s) 618
AluBI AGCT 4 cut(s) 248, 304, 374, 958
AluI AGCT 4 cut(s) 248, 304, 374, 958
Alw21I GWGCWC 2 cut(s) 306, 1109
Alw26I GTCTC 2 cut(s) 54, 159
AlwI GGATC 2 cut(s) 482, 495
AlwNI CAGNNNCTG 1 cut(s) 251
Ama87I CYCGRG 1 cut(s) 57
AoxI GGCC 3 cut(s) 253, 333, 616
ApeKI GCWGC 5 cut(s) 248, 374, 541, 958, 992
ApoI RAATTY 2 cut(s) 382, 881
Asp700I GAANNNNTTC 1 cut(s) 903
AspS9I GGNCC 1 cut(s) 281
AsuHPI GGTGA 3 cut(s) 1060, 1071, 1075
AvaI CYCGRG 1 cut(s) 57
AvaII GGWCC 1 cut(s) 281
BaeGI GKGCMC 1 cut(s) 650
BamHI GGATCC 1 cut(s) 487
BanII GRGCYC 2 cut(s) 306, 781
BbsI GAAGAC 1 cut(s) 433
Bbv12I GWGCWC 2 cut(s) 306, 1109
BbvI GCAGC 5 cut(s) 235, 361, 528, 945, 979
BccI CCATC 2 cut(s) 87, 957
BcgI CGANNNNNNTGC 2 cut(s) 562, 596
BciT130I CCWGG 1 cut(s) 620
BciVI GTATCC 1 cut(s) 94
BclI TGATCA 1 cut(s) 1065
BcoDI GTCTC 2 cut(s) 54, 159
BfmI CTRYAG 1 cut(s) 375
BfuAI ACCTGC 1 cut(s) 1209
BfuI GTATCC 1 cut(s) 94
BisI GCNGC 5 cut(s) 249, 375, 542, 959, 993
BlsI GCNGC 5 cut(s) 250, 376, 543, 960, 994
Bme1390I CCNGG 1 cut(s) 620
Bme18I GGWCC 1 cut(s) 281
BmeT110I CYCGRG 1 cut(s) 57
BmgT120I GGNCC 1 cut(s) 281
BmiI GGNNCC 3 cut(s) 122, 489, 982
BmrFI CCNGG 1 cut(s) 620
BmsI GCATC 1 cut(s) 7
BpiI GAAGAC 1 cut(s) 433
BpmI CTGGAG 2 cut(s) 611, 803
BpuEI CTTGAG 3 cut(s) 320, 686, 1133
BsaJI CCNNGG 3 cut(s) 619, 639, 976
Bsc4I CCNNNNNNNGG 3 cut(s) 93, 432, 433
Bse1I ACTGG 1 cut(s) 808
BseBI CCWGG 1 cut(s) 620
BseDI CCNNGG 3 cut(s) 619, 639, 976
BseGI GGATG 2 cut(s) 442, 949
BseLI CCNNNNNNNGG 3 cut(s) 93, 432, 433
BseMII CTCAG 2 cut(s) 258, 466
BseNI ACTGG 1 cut(s) 808
BseSI GKGCMC 1 cut(s) 650
BseXI GCAGC 5 cut(s) 235, 361, 528, 945, 979
BsgI GTGCAG 1 cut(s) 1212
Bsh1285I CGRYCG 1 cut(s) 576
BshFI GGCC 3 cut(s) 255, 335, 618
BsiEI CGRYCG 1 cut(s) 576
BsiHKAI GWGCWC 2 cut(s) 306, 1109
BsiHKCI CYCGRG 1 cut(s) 57
BslFI GGGAC 1 cut(s) 833
BslI CCNNNNNNNGG 3 cut(s) 93, 432, 433
BsmAI GTCTC 2 cut(s) 54, 159
BsmBI CGTCTC 1 cut(s) 54
BsmFI GGGAC 1 cut(s) 833
BsmI GAATGC 1 cut(s) 1093
BsnI GGCC 3 cut(s) 255, 335, 618
BsoBI CYCGRG 1 cut(s) 57
Bsp1286I GDGCHC 4 cut(s) 306, 650, 781, 1109
Bsp143I GATC 5 cut(s) 487, 563, 573, 1065, 1076
Bsp19I CCATGG 2 cut(s) 639, 976
BspACI CCGC 2 cut(s) 421, 1237
BspANI GGCC 3 cut(s) 255, 335, 618
BspCNI CTCAG 2 cut(s) 257, 465
BspHI TCATGA 1 cut(s) 340
BspLI GGNNCC 3 cut(s) 122, 489, 982
BspMAI CTGCAG 1 cut(s) 379
BspMI ACCTGC 1 cut(s) 1209
BspPI GGATC 2 cut(s) 482, 495
BspQI GCTCTTC 1 cut(s) 1169
BsrBI CCGCTC 1 cut(s) 423
BsrI ACTGG 1 cut(s) 808
BssECI CCNNGG 3 cut(s) 619, 639, 976
BssMI GATC 5 cut(s) 487, 563, 573, 1065, 1076
BssT1I CCWWGG 2 cut(s) 639, 976
Bst2UI CCWGG 1 cut(s) 620
Bst4CI ACNGT 3 cut(s) 505, 1013, 1072
Bst6I CTCTTC 1 cut(s) 1169
BstC8I GCNNGC 2 cut(s) 253, 333
BstDEI CTNAG 3 cut(s) 244, 290, 452
BstDSI CCRYGG 2 cut(s) 639, 976
BstF5I GGATG 2 cut(s) 442, 949
BstKTI GATC 5 cut(s) 490, 566, 576, 1068, 1079
BstMAI GTCTC 2 cut(s) 54, 159
BstMBI GATC 5 cut(s) 487, 563, 573, 1065, 1076
BstMCI CGRYCG 1 cut(s) 576
BstMWI GCNNNNNNNGC 6 cut(s) 168, 257, 670, 737, 989, 1185
BstNI CCWGG 1 cut(s) 620
BstSCI CCNGG 1 cut(s) 618
BstSFI CTRYAG 1 cut(s) 375
BstSLI GKGCMC 1 cut(s) 650
BstV1I GCAGC 5 cut(s) 235, 361, 528, 945, 979
BstV2I GAAGAC 1 cut(s) 433
BstX2I RGATCY 1 cut(s) 487
BstYI RGATCY 1 cut(s) 487
BsuI GTATCC 1 cut(s) 94
BsuRI GGCC 3 cut(s) 255, 335, 618
BtgI CCRYGG 2 cut(s) 639, 976
BtsCI GGATG 2 cut(s) 442, 949
BtsI GCAGTG 2 cut(s) 602, 1195
BtsIMutI CAGTG 4 cut(s) 602, 815, 1082, 1195
BveI ACCTGC 1 cut(s) 1209
Cac8I GCNNGC 2 cut(s) 253, 333
CaiI CAGNNNCTG 1 cut(s) 251
CciI TCATGA 1 cut(s) 340
Cfr13I GGNCC 1 cut(s) 281
CseI GACGC 1 cut(s) 830
CviAII CATG 6 cut(s) 341, 640, 754, 977, 985, 1231
DdeI CTNAG 3 cut(s) 244, 290, 452
DpnI GATC 5 cut(s) 489, 565, 575, 1067, 1078
DpnII GATC 5 cut(s) 487, 563, 573, 1065, 1076
DraI TTTAAA 1 cut(s) 396
Eam1104I CTCTTC 1 cut(s) 1169
EarI CTCTTC 1 cut(s) 1169
Ecl136II GAGCTC 1 cut(s) 304
Eco130I CCWWGG 2 cut(s) 639, 976
Eco147I AGGCCT 1 cut(s) 335
Eco24I GRGCYC 2 cut(s) 306, 781
Eco32I GATATC 1 cut(s) 973
Eco47I GGWCC 1 cut(s) 281
Eco53kI GAGCTC 1 cut(s) 304
Eco57I CTGAAG 2 cut(s) 494, 1151
Eco88I CYCGRG 1 cut(s) 57
EcoICRI GAGCTC 1 cut(s) 304
EcoRI GAATTC 1 cut(s) 881
EcoRII CCWGG 1 cut(s) 618
EcoRV GATATC 1 cut(s) 973
EcoT14I CCWWGG 2 cut(s) 639, 976
EcoT38I GRGCYC 2 cut(s) 306, 781
ErhI CCWWGG 2 cut(s) 639, 976
Esp3I CGTCTC 1 cut(s) 54
FaeI CATG 6 cut(s) 344, 643, 757, 980, 988, 1234
FaqI GGGAC 1 cut(s) 833
FatI CATG 6 cut(s) 340, 639, 753, 976, 984, 1230
FauI CCCGC 1 cut(s) 428
FauNDI CATATG 1 cut(s) 45
FbaI TGATCA 1 cut(s) 1065
FblI GTMKAC 1 cut(s) 750
Fnu4HI GCNGC 5 cut(s) 249, 375, 542, 959, 993
FokI GGATG 2 cut(s) 449, 936
FriOI GRGCYC 2 cut(s) 306, 781
Fsp4HI GCNGC 5 cut(s) 249, 375, 542, 959, 993
GluI GCNGC 5 cut(s) 249, 375, 542, 959, 993
GsuI CTGGAG 2 cut(s) 611, 803
HaeIII GGCC 3 cut(s) 255, 335, 618
HgaI GACGC 1 cut(s) 830
Hin1II CATG 6 cut(s) 344, 643, 757, 980, 988, 1234
HincII GTYRAC 1 cut(s) 925
HindII GTYRAC 1 cut(s) 925
HphI GGTGA 3 cut(s) 1060, 1071, 1075
Hpy166II GTNNAC 2 cut(s) 751, 925
Hpy188I TCNGA 6 cut(s) 204, 308, 528, 1005, 1017, 1170
Hpy8I GTNNAC 2 cut(s) 751, 925
HpyAV CCTTC 5 cut(s) 91, 360, 548, 868, 914
HpyCH4III ACNGT 3 cut(s) 505, 1013, 1072
HpyCH4IV ACGT 1 cut(s) 63
HpyF10VI GCNNNNNNNGC 6 cut(s) 168, 257, 670, 737, 989, 1185
HpyF3I CTNAG 3 cut(s) 244, 290, 452
HpySE526I ACGT 1 cut(s) 63
Hsp92II CATG 6 cut(s) 344, 643, 757, 980, 988, 1234
Ksp22I TGATCA 1 cut(s) 1065
Kzo9I GATC 5 cut(s) 487, 563, 573, 1065, 1076
LguI GCTCTTC 1 cut(s) 1169
LmnI GCTCC 5 cut(s) 120, 309, 428, 592, 980
Lsp1109I GCAGC 5 cut(s) 235, 361, 528, 945, 979
LweI GCATC 1 cut(s) 7
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 1 cut(s) 455
MalI GATC 5 cut(s) 489, 565, 575, 1067, 1078
MbiI CCGCTC 1 cut(s) 423
MboI GATC 5 cut(s) 487, 563, 573, 1065, 1076
MboII GAAGA 8 cut(s) 202, 433, 1018, 1067, 1147, 1157, 1186, 1195
MfeI CAATTG 2 cut(s) 430, 1149
MflI RGATCY 1 cut(s) 487
MhlI GDGCHC 4 cut(s) 306, 650, 781, 1109
MlyI GAGTC 5 cut(s) 95, 398, 417, 756, 1124
MmeI TCCRAC 3 cut(s) 308, 585, 665
MnlI CCTC 5 cut(s) 478, 661, 694, 708, 913
MroXI GAANNNNTTC 1 cut(s) 903
MseI TTAA 5 cut(s) 269, 368, 395, 413, 657
MslI CAYNNNNRTG 1 cut(s) 1188
MspA1I CMGCKG 1 cut(s) 248
MspR9I CCNGG 1 cut(s) 620
MunI CAATTG 2 cut(s) 430, 1149
Mva1269I GAATGC 1 cut(s) 1093
MvaI CCWGG 1 cut(s) 620
MwoI GCNNNNNNNGC 6 cut(s) 168, 257, 670, 737, 989, 1185
NcoI CCATGG 2 cut(s) 639, 976
NdeI CATATG 1 cut(s) 45
NdeII GATC 5 cut(s) 487, 563, 573, 1065, 1076
NlaIII CATG 6 cut(s) 344, 643, 757, 980, 988, 1234
NlaIV GGNNCC 3 cut(s) 122, 489, 982
PagI TCATGA 1 cut(s) 340
PceI AGGCCT 1 cut(s) 335
PciSI GCTCTTC 1 cut(s) 1169
PctI GAATGC 1 cut(s) 1093
PdmI GAANNNNTTC 1 cut(s) 903
PfeI GAWTC 5 cut(s) 688, 718, 1028, 1138, 1162
PflMI CCANNNNNTGG 1 cut(s) 93
PkrI GCNGC 5 cut(s) 250, 376, 543, 960, 994
Ple19I CGATCG 1 cut(s) 576
PleI GAGTC 5 cut(s) 95, 397, 416, 755, 1123
PpsI GAGTC 5 cut(s) 95, 397, 416, 755, 1123
Psp124BI GAGCTC 1 cut(s) 306
Psp6I CCWGG 1 cut(s) 618
PspGI CCWGG 1 cut(s) 618
PspN4I GGNNCC 3 cut(s) 122, 489, 982
PspPI GGNCC 1 cut(s) 281
PstI CTGCAG 1 cut(s) 379
PstNI CAGNNNCTG 1 cut(s) 251
PsuI RGATCY 1 cut(s) 487
PvuI CGATCG 1 cut(s) 576
PvuII CAGCTG 1 cut(s) 248
RseI CAYNNNNRTG 1 cut(s) 1188
SacI GAGCTC 1 cut(s) 306
SapI GCTCTTC 1 cut(s) 1169
SaqAI TTAA 5 cut(s) 269, 368, 395, 413, 657
SatI GCNGC 5 cut(s) 249, 375, 542, 959, 993
Sau3AI GATC 5 cut(s) 487, 563, 573, 1065, 1076
Sau96I GGNCC 1 cut(s) 281
SchI GAGTC 5 cut(s) 95, 398, 417, 756, 1124
ScrFI CCNGG 1 cut(s) 620
SduI GDGCHC 4 cut(s) 306, 650, 781, 1109
SfaNI GCATC 1 cut(s) 7
SfcI CTRYAG 1 cut(s) 375
SinI GGWCC 1 cut(s) 281
SmiMI CAYNNNNRTG 1 cut(s) 1188
SmlI CTYRAG 3 cut(s) 299, 665, 1112
SmoI CTYRAG 3 cut(s) 299, 665, 1112
SseBI AGGCCT 1 cut(s) 335
SsiI CCGC 2 cut(s) 421, 1237
SstI GAGCTC 1 cut(s) 306
StuI AGGCCT 1 cut(s) 335
StyD4I CCNGG 1 cut(s) 618
StyI CCWWGG 2 cut(s) 639, 976
TaaI ACNGT 3 cut(s) 505, 1013, 1072
TaiI ACGT 1 cut(s) 66
TaqI TCGA 4 cut(s) 572, 576, 725, 1206
TfiI GAWTC 5 cut(s) 688, 718, 1028, 1138, 1162
Tru1I TTAA 5 cut(s) 269, 368, 395, 413, 657
Tru9I TTAA 5 cut(s) 269, 368, 395, 413, 657
TscAI CASTG 4 cut(s) 602, 815, 1089, 1195
TseI GCWGC 5 cut(s) 248, 374, 541, 958, 992
TspDTI ATGAA 5 cut(s) 62, 357, 887, 1187, 1247
TspRI CASTG 4 cut(s) 602, 815, 1089, 1195
Van91I CCANNNNNTGG 1 cut(s) 93
VpaK11BI GGWCC 1 cut(s) 281
XapI RAATTY 2 cut(s) 382, 881
XmiI GTMKAC 1 cut(s) 750
XmnI GAANNNNTTC 1 cut(s) 903
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.