Rroxscaffold_3G00236730

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0010481
Physical Location & Seq
Forward (+)
24088920 .. 24091453
2534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00236730.1

Sequence Viewer

Length: 1281 bp
ATGACAATTGCAAAGCAGATAATGGAGTCTCTCCCAGATGCTATTGTTCAATACATATTGTCGTACATGAATAATGCGCGAGATGTGGCACTTTGTAATTGTGTATCCAAGCGATGGAAGGACTCAATTCCATATATACGGAGCCTTTTCTTCCCTAGGAACTCCTTTGATAATCTCACAGGCAGTGACACTCCTGATGACATTGTATTGAAGATGATTTCTCTGATTGAAAGATTGGAAAATCTTGTTGTTTATAGCCCATTTTCGGGTGCTGGGCTTGCTTCATGGTTGACGCTGATAGGCCCCTCCCTTAGGTATCTTGAGCTTCGAATGGACAATCTTGCTGAGCAAGAGGTCTGCAATGAACGCCCTTCGAAATTGGATTGCTTAACTGCTGCAAAGAGTTTGGAGTCTTTAAAACTTTGGGGAGTCTTAATGACCCGTTCCCCCAAGTGGGATGTCTTCCAGAAACTCAAGAACCTTGAAATTGTTGGTGCAAGGTTGGAGGATCCTGCGCTGTCAACTGTGCTTCAGGCCTGTCCTAATCTGACCAAACTGTTGCTGCTTGGTTGCGAAGGAGTCGTTGCAGTTTCAATTGAGTTGCCACATCTGGAGCAGTGTAAGCTAGACTTCTACGGCTTGGGCAATTGCTCATTTTCTATGAACTGCCCAAAAATTGAGGTCCTTGAGGTGCAAGGATGTAGTTGGATTCGGGTTCAGAAGACAAAGCACTTGAGGAATCTTTCAATTGCCAATAATGCAGGGAGAGTCTACATGGTTGATTTTGAAAAACTTGTGGCTCTGGAGTCCTTATCCATTAGGGGCGTCCAATGGTGTTGGGGTGCAATAAGCAGTATGCTGCAGTGGGCAAGCGAAGTAAAGCACCTCTACATGAAGGTGGAATTCACAGGAGATTTCGAGACTCTTCAACCCTTTCCAGAGGTTGACTTTGTTGATTTTTTTAATAATCATCCAAAGCTGCAAAATTTTGACATCCATGGAGCCATGTTTGCAGCTCTTTGTCAGAAGAACAGTCTGAAAAATGTCGATTCAGGATTTCTAATTCCTTGTCTGGAGTCAGTGGTGATCACAGTGCGATCACCACTGAATGCTGAACAGAAAATGAGCACTCTTGAGTCCTTGTTGAAGTATGGGAAGAATCTCAAGAGCATGGTGATCAAGGTTCTTCAGATGAAGAGTAACCATAGCAGCGCAGATGATTTCTTTGATGAGATATGCAGGTTTACATGCATGAACCGAAAGATAGTTAGAATAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

426

Amino Acids

48.27

Weight (kDa)

6.62

Isoelectric Point (pI)

41.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 9 - 43 5.5e-06 F-box-like
LRR_At1g61320_AtMIF1 PF23622 92 - 333 2.5e-06 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 128 - 229 3.2e-06 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010481)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10780 AT1G10780
fragaria_vesca FvH4_5g29550 FvH4_5g29550
malus_domestica MD08G1228700.v1.1 MD15G1422700.v1.1
prunus_persica Prupe.1G568000_v2.0.a1
pyrus_communis pycom15g37460
rosa_chinensis RchiOBHm_Chr7g0222501
rosa_laevigata RLG00000002049
rosa_multiflora Rmu_ssc0000146.1_g000020
rosa_roxburghii Rroxscaffold_3G00236730
rosa_rugosa Rorug07G0209900 Rorug07G0210000 Rorug07G0210000
rosa_samantha Rh7AG351700 Rh7BG342300 Rh7CG369100 Rh7DG348400
rosa_wichuraiana Rw7G029690 Rw7G030020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1230
AccB7I CCANNNNNTGG 1 cut(s) 114
AccI GTMKAC 1 cut(s) 771
AccII CGCG 1 cut(s) 79
AclWI GGATC 2 cut(s) 503, 516
AcsI RAATTY 2 cut(s) 902, 985
AcuI CTGAAG 2 cut(s) 515, 1172
AcyI GRCGYC 1 cut(s) 825
AfaI GTAC 1 cut(s) 65
AfiI CCNNNNNNNGG 6 cut(s) 114, 265, 266, 312, 453, 454
AgsI TTSAA 9 cut(s) 50, 211, 230, 485, 594, 747, 788, 929, 1147
AluBI AGCT 4 cut(s) 325, 625, 979, 1016
AluI AGCT 4 cut(s) 325, 625, 979, 1016
Alw21I GWGCWC 1 cut(s) 1130
Alw26I GTCTC 2 cut(s) 33, 914
AlwI GGATC 2 cut(s) 503, 516
AoxI GGCC 2 cut(s) 301, 534
ApeKI GCWGC 6 cut(s) 395, 562, 859, 979, 1013, 1209
ApoI RAATTY 2 cut(s) 902, 985
AspA2I CCTAGG 1 cut(s) 155
AspLEI GCGC 3 cut(s) 79, 517, 1214
AspS9I GGNCC 2 cut(s) 302, 682
AsuHPI GGTGA 3 cut(s) 1092, 1096, 1186
AsuII TTCGAA 2 cut(s) 328, 374
AvaII GGWCC 1 cut(s) 682
AvrII CCTAGG 1 cut(s) 155
AxyI CCTNAGG 1 cut(s) 311
BamHI GGATCC 1 cut(s) 508
BbsI GAAGAC 2 cut(s) 454, 728
Bbv12I GWGCWC 1 cut(s) 1130
BbvI GCAGC 6 cut(s) 382, 549, 846, 966, 1025, 1221
BccI CCATC 1 cut(s) 108
BceAI ACGGC 1 cut(s) 652
BciVI GTATCC 1 cut(s) 115
BclI TGATCA 2 cut(s) 1086, 1176
BcoDI GTCTC 2 cut(s) 33, 914
BfaI CTAG 2 cut(s) 156, 626
BfmI CTRYAG 1 cut(s) 860
BfuAI ACCTGC 1 cut(s) 1230
BfuI GTATCC 1 cut(s) 115
BisI GCNGC 6 cut(s) 396, 563, 860, 980, 1014, 1210
BlnI CCTAGG 1 cut(s) 155
BlpI GCTNAGC 1 cut(s) 345
BlsI GCNGC 6 cut(s) 397, 564, 861, 981, 1015, 1211
Bme18I GGWCC 1 cut(s) 682
BmgT120I GGNCC 2 cut(s) 302, 682
BmiI GGNNCC 4 cut(s) 143, 304, 510, 1003
BmsI GCATC 1 cut(s) 28
BpiI GAAGAC 2 cut(s) 454, 728
BpmI CTGGAG 3 cut(s) 632, 824, 1094
Bpu1102I GCTNAGC 1 cut(s) 345
Bpu14I TTCGAA 2 cut(s) 328, 374
BpuEI CTTGAG 6 cut(s) 341, 458, 707, 754, 1148, 1154
BsaHI GRCGYC 1 cut(s) 825
BsaJI CCNNGG 2 cut(s) 155, 997
Bsc4I CCNNNNNNNGG 6 cut(s) 114, 265, 266, 312, 453, 454
Bse21I CCTNAGG 1 cut(s) 311
Bse3DI GCAATG 1 cut(s) 367
BseDI CCNNGG 2 cut(s) 155, 997
BseGI GGATG 4 cut(s) 463, 704, 970, 993
BseLI CCNNNNNNNGG 6 cut(s) 114, 265, 266, 312, 453, 454
BseMI GCAATG 1 cut(s) 367
BseMII CTCAG 1 cut(s) 336
BseXI GCAGC 6 cut(s) 382, 549, 846, 966, 1025, 1221
BseYI CCCAGC 1 cut(s) 272
Bsh1236I CGCG 1 cut(s) 79
BshFI GGCC 2 cut(s) 303, 536
BsiHKAI GWGCWC 1 cut(s) 1130
BslI CCNNNNNNNGG 6 cut(s) 114, 265, 266, 312, 453, 454
BsmAI GTCTC 2 cut(s) 33, 914
BsmI GAATGC 1 cut(s) 1114
BsnI GGCC 2 cut(s) 303, 536
Bsp119I TTCGAA 2 cut(s) 328, 374
Bsp1286I GDGCHC 1 cut(s) 1130
Bsp143I GATC 4 cut(s) 508, 1086, 1097, 1176
Bsp1720I GCTNAGC 1 cut(s) 345
Bsp19I CCATGG 1 cut(s) 997
BspANI GGCC 2 cut(s) 303, 536
BspCNI CTCAG 1 cut(s) 337
BspFNI CGCG 1 cut(s) 79
BspLI GGNNCC 4 cut(s) 143, 304, 510, 1003
BspMAI CTGCAG 1 cut(s) 864
BspMI ACCTGC 1 cut(s) 1230
BspPI GGATC 2 cut(s) 503, 516
BspT104I TTCGAA 2 cut(s) 328, 374
BsrDI GCAATG 1 cut(s) 367
BssECI CCNNGG 2 cut(s) 155, 997
BssMI GATC 4 cut(s) 508, 1086, 1097, 1176
BssNI GRCGYC 1 cut(s) 825
BssT1I CCWWGG 2 cut(s) 155, 997
Bst4CI ACNGT 4 cut(s) 526, 558, 1034, 1093
Bst6I CTCTTC 2 cut(s) 930, 1190
BstACI GRCGYC 1 cut(s) 825
BstBI TTCGAA 2 cut(s) 328, 374
BstC8I GCNNGC 2 cut(s) 279, 871
BstDEI CTNAG 2 cut(s) 311, 345
BstDSI CCRYGG 1 cut(s) 997
BstENI CCTNNNNNAGG 1 cut(s) 310
BstF5I GGATG 4 cut(s) 463, 704, 970, 993
BstFNI CGCG 1 cut(s) 79
BstHHI GCGC 3 cut(s) 79, 517, 1214
BstKTI GATC 4 cut(s) 511, 1089, 1100, 1179
BstMAI GTCTC 2 cut(s) 33, 914
BstMBI GATC 4 cut(s) 508, 1086, 1097, 1176
BstMWI GCNNNNNNNGC 5 cut(s) 278, 366, 622, 758, 1010
BstNSI RCATGY 1 cut(s) 1251
BstSFI CTRYAG 1 cut(s) 860
BstUI CGCG 1 cut(s) 79
BstV1I GCAGC 6 cut(s) 382, 549, 846, 966, 1025, 1221
BstV2I GAAGAC 2 cut(s) 454, 728
BstX2I RGATCY 1 cut(s) 508
BstYI RGATCY 1 cut(s) 508
Bsu36I CCTNAGG 1 cut(s) 311
BsuI GTATCC 1 cut(s) 115
BsuRI GGCC 2 cut(s) 303, 536
BtgI CCRYGG 1 cut(s) 997
BtgZI GCGATG 1 cut(s) 127
BtsCI GGATG 4 cut(s) 463, 704, 970, 993
BtsI GCAGTG 3 cut(s) 190, 623, 869
BtsIMutI CAGTG 6 cut(s) 190, 623, 869, 1086, 1098, 1103
BveI ACCTGC 1 cut(s) 1230
Cac8I GCNNGC 2 cut(s) 279, 871
CfoI GCGC 3 cut(s) 79, 517, 1214
Cfr13I GGNCC 2 cut(s) 302, 682
CseI GACGC 2 cut(s) 301, 814
Csp6I GTAC 1 cut(s) 64
CviAII CATG 9 cut(s) 67, 285, 775, 892, 998, 1006, 1171, 1248, 1252
CviQI GTAC 1 cut(s) 64
DdeI CTNAG 2 cut(s) 311, 345
DpnI GATC 4 cut(s) 510, 1088, 1099, 1178
DpnII GATC 4 cut(s) 508, 1086, 1097, 1176
DraI TTTAAA 1 cut(s) 417
Eam1104I CTCTTC 2 cut(s) 930, 1190
EarI CTCTTC 2 cut(s) 930, 1190
Eco130I CCWWGG 2 cut(s) 155, 997
Eco147I AGGCCT 1 cut(s) 536
Eco47I GGWCC 1 cut(s) 682
Eco57I CTGAAG 2 cut(s) 515, 1172
Eco81I CCTNAGG 1 cut(s) 311
EcoNI CCTNNNNNAGG 1 cut(s) 310
EcoO109I RGGNCCY 2 cut(s) 302, 682
EcoRI GAATTC 1 cut(s) 902
EcoT14I CCWWGG 2 cut(s) 155, 997
EcoT22I ATGCAT 1 cut(s) 1253
ErhI CCWWGG 2 cut(s) 155, 997
FaeI CATG 9 cut(s) 70, 288, 778, 895, 1001, 1009, 1174, 1251, 1255
FalI AAGNNNNNCTT 2 cut(s) 614, 646
FatI CATG 9 cut(s) 66, 284, 774, 891, 997, 1005, 1170, 1247, 1251
FbaI TGATCA 2 cut(s) 1086, 1176
FblI GTMKAC 1 cut(s) 771
Fnu4HI GCNGC 6 cut(s) 396, 563, 860, 980, 1014, 1210
FokI GGATG 4 cut(s) 470, 711, 957, 980
Fsp4HI GCNGC 6 cut(s) 396, 563, 860, 980, 1014, 1210
FspBI CTAG 2 cut(s) 156, 626
GlaI GCGC 3 cut(s) 78, 516, 1213
GluI GCNGC 6 cut(s) 396, 563, 860, 980, 1014, 1210
GsaI CCCAGC 1 cut(s) 276
GsuI CTGGAG 3 cut(s) 632, 824, 1094
HaeIII GGCC 2 cut(s) 303, 536
HgaI GACGC 2 cut(s) 301, 814
HhaI GCGC 3 cut(s) 79, 517, 1214
Hin1I GRCGYC 1 cut(s) 825
Hin1II CATG 9 cut(s) 70, 288, 778, 895, 1001, 1009, 1174, 1251, 1255
Hin6I GCGC 3 cut(s) 77, 515, 1212
HinP1I GCGC 3 cut(s) 77, 515, 1212
HincII GTYRAC 3 cut(s) 291, 522, 946
HindII GTYRAC 3 cut(s) 291, 522, 946
HphI GGTGA 3 cut(s) 1092, 1096, 1186
Hpy166II GTNNAC 5 cut(s) 291, 522, 772, 946, 1245
Hpy188I TCNGA 6 cut(s) 225, 549, 720, 1026, 1038, 1191
Hpy8I GTNNAC 5 cut(s) 291, 522, 772, 946, 1245
HpyAV CCTTC 4 cut(s) 112, 381, 569, 889
HpyCH4III ACNGT 4 cut(s) 526, 558, 1034, 1093
HpyF10VI GCNNNNNNNGC 5 cut(s) 278, 366, 622, 758, 1010
HpyF3I CTNAG 2 cut(s) 311, 345
Hsp92I GRCGYC 1 cut(s) 825
Hsp92II CATG 9 cut(s) 70, 288, 778, 895, 1001, 1009, 1174, 1251, 1255
HspAI GCGC 3 cut(s) 77, 515, 1212
Ksp22I TGATCA 2 cut(s) 1086, 1176
Kzo9I GATC 4 cut(s) 508, 1086, 1097, 1176
LmnI GCTCC 3 cut(s) 141, 613, 1001
Lsp1109I GCAGC 6 cut(s) 382, 549, 846, 966, 1025, 1221
LweI GCATC 1 cut(s) 28
MaeI CTAG 2 cut(s) 156, 626
MaeIII GTNAC 2 cut(s) 185, 1199
MalI GATC 4 cut(s) 510, 1088, 1099, 1178
MboI GATC 4 cut(s) 508, 1086, 1097, 1176
MboII GAAGA 9 cut(s) 142, 223, 454, 733, 917, 1039, 1168, 1178, 1207
MfeI CAATTG 4 cut(s) 6, 594, 646, 747
MflI RGATCY 1 cut(s) 508
MhlI GDGCHC 1 cut(s) 1130
MmeI TCCRAC 2 cut(s) 483, 686
MnlI CCTC 8 cut(s) 316, 346, 499, 673, 682, 729, 896, 934
Mph1103I ATGCAT 1 cut(s) 1253
MseI TTAA 4 cut(s) 389, 416, 434, 963
MslI CAYNNNNRTG 1 cut(s) 896
MunI CAATTG 4 cut(s) 6, 594, 646, 747
Mva1269I GAATGC 1 cut(s) 1114
MvnI CGCG 1 cut(s) 79
MwoI GCNNNNNNNGC 5 cut(s) 278, 366, 622, 758, 1010
NcoI CCATGG 1 cut(s) 997
NdeII GATC 4 cut(s) 508, 1086, 1097, 1176
NlaIII CATG 9 cut(s) 70, 288, 778, 895, 1001, 1009, 1174, 1251, 1255
NlaIV GGNNCC 4 cut(s) 143, 304, 510, 1003
NmuCI GTSAC 1 cut(s) 185
NsiI ATGCAT 1 cut(s) 1253
NspI RCATGY 1 cut(s) 1251
NspV TTCGAA 2 cut(s) 328, 374
PceI AGGCCT 1 cut(s) 536
PctI GAATGC 1 cut(s) 1114
PfeI GAWTC 4 cut(s) 709, 739, 1049, 1159
PflMI CCANNNNNTGG 1 cut(s) 114
PkrI GCNGC 6 cut(s) 397, 564, 861, 981, 1015, 1211
PpuMI RGGWCCY 1 cut(s) 682
Psp5II RGGWCCY 1 cut(s) 682
PspFI CCCAGC 1 cut(s) 272
PspN4I GGNNCC 4 cut(s) 143, 304, 510, 1003
PspPI GGNCC 2 cut(s) 302, 682
PspPPI RGGWCCY 1 cut(s) 682
PstI CTGCAG 1 cut(s) 864
PsuI RGATCY 1 cut(s) 508
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
RseI CAYNNNNRTG 1 cut(s) 896
SaqAI TTAA 4 cut(s) 389, 416, 434, 963
SatI GCNGC 6 cut(s) 396, 563, 860, 980, 1014, 1210
Sau3AI GATC 4 cut(s) 508, 1086, 1097, 1176
Sau96I GGNCC 2 cut(s) 302, 682
SduI GDGCHC 1 cut(s) 1130
SfaNI GCATC 1 cut(s) 28
SfcI CTRYAG 1 cut(s) 860
SfuI TTCGAA 2 cut(s) 328, 374
SinI GGWCC 1 cut(s) 682
SmiMI CAYNNNNRTG 1 cut(s) 896
SmlI CTYRAG 6 cut(s) 320, 473, 686, 733, 1133, 1163
SmoI CTYRAG 6 cut(s) 320, 473, 686, 733, 1133, 1163
SseBI AGGCCT 1 cut(s) 536
SspMI CTAG 2 cut(s) 156, 626
StuI AGGCCT 1 cut(s) 536
StyI CCWWGG 2 cut(s) 155, 997
TaaI ACNGT 4 cut(s) 526, 558, 1034, 1093
TaqI TCGA 4 cut(s) 328, 374, 918, 1047
TfiI GAWTC 4 cut(s) 709, 739, 1049, 1159
Tru1I TTAA 4 cut(s) 389, 416, 434, 963
Tru9I TTAA 4 cut(s) 389, 416, 434, 963
TscAI CASTG 6 cut(s) 190, 623, 869, 1086, 1098, 1110
TseFI GTSAC 1 cut(s) 185
TseI GCWGC 6 cut(s) 395, 562, 859, 979, 1013, 1209
Tsp45I GTSAC 1 cut(s) 185
TspDTI ATGAA 7 cut(s) 83, 273, 378, 677, 908, 1208, 1268
TspGWI ACGGA 1 cut(s) 154
TspRI CASTG 6 cut(s) 190, 623, 869, 1086, 1098, 1110
Van91I CCANNNNNTGG 1 cut(s) 114
VpaK11BI GGWCC 1 cut(s) 682
XagI CCTNNNNNAGG 1 cut(s) 310
XapI RAATTY 2 cut(s) 902, 985
XceI RCATGY 1 cut(s) 1251
XmaJI CCTAGG 1 cut(s) 155
XmiI GTMKAC 1 cut(s) 771
XspI CTAG 2 cut(s) 156, 626
Zsp2I ATGCAT 1 cut(s) 1253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.