AT1G10960

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012317
Physical Location & Seq
Forward (+)
3664187 .. 3665040
854 bp
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UTR
Exon/CDS
Intron
AT1G10960.1

Sequence Viewer

Length: 447 bp
ATGGCTTCCACTGCTCTCTCCAGCGCAATCGTAAGCACCTCTTTCCTCCGCCGTCAACAGACACCAATCAGCCTCAGATCCCTCCCGTTTGCCAACACACAATCTCTCTTCGGCCTCAAATCTTCCACCGCTCGCGGCGGCCGCGTCACGGCCATGGCTACCTACAAGGTCAAGTTCATCACACCTGAGGGAGAACAAGAGGTCGAATGCGAAGAAGATGTCTACGTCCTCGACGCTGCTGAGGAAGCCGGACTCGACTTGCCCTACTCATGCCGTGCCGGTTCTTGCTCAAGTTGCGCCGGGAAAGTCGTCTCTGGTTCTATTGACCAGTCGGACCAGAGCTTCTTAGACGATGAACAGATGAGTGAGGGCTATGTCTTGACCTGTGTGGCTTATCCGACTTCTGATGTCGTCATCGAAACCCACAAAGAAGAAGCCATTATGTAA

Protein Analysis

148

Amino Acids

15.9

Weight (kDa)

4.44

Isoelectric Point (pI)

66.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fer2 PF00111 61 - 134 7.6e-24 2Fe-2S iron-sulfur cluster binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10960 AT1G60950
fragaria_vesca FvH4_5g28820
malus_domestica MD08G1236800.v1.1 MD15G1428700.v1.1
prunus_persica Prupe.1G573600_v2.0.a1
pyrus_communis pycom08g20500
rosa_chinensis RchiOBHm_Chr7g0221031
rosa_laevigata RLG00000002182
rosa_multiflora Rmu_co8393539.1_g000001 Rmu_sc0002105.1_g000004 Rmu_sc0012763.1_g000009
rosa_roxburghii Rroxscaffold_3G00238810
rosa_rugosa Rorug07G0200100
rosa_samantha Rh7AG339400 Rh7BG330400 Rh7CG357400 Rh7DG338100
rosa_wichuraiana Rw7G028870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 131
AccI GTMKAC 1 cut(s) 222
AccII CGCG 2 cut(s) 135, 144
AciI CCGC 5 cut(s) 49, 129, 135, 138, 142
AclWI GGATC 1 cut(s) 72
AcoI YGGCCR 2 cut(s) 139, 150
AfiI CCNNNNNNNGG 1 cut(s) 148
AluBI AGCT 1 cut(s) 342
AluI AGCT 1 cut(s) 342
Alw26I GTCTC 1 cut(s) 316
AlwI GGATC 1 cut(s) 72
AoxI GGCC 3 cut(s) 112, 139, 150
ApeKI GCWGC 1 cut(s) 236
ArsI GACNNNNNNTTYG 2 cut(s) 204, 236
AspLEI GCGC 2 cut(s) 26, 299
AspS9I GGNCC 1 cut(s) 334
AsuC2I CCSGG 1 cut(s) 301
AvaII GGWCC 1 cut(s) 334
AxyI CCTNAGG 1 cut(s) 186
BbvCI CCTCAGC 1 cut(s) 240
BbvI GCAGC 1 cut(s) 223
BceAI ACGGC 3 cut(s) 36, 165, 258
BcnI CCSGG 1 cut(s) 301
BcoDI GTCTC 1 cut(s) 316
BisI GCNGC 4 cut(s) 136, 139, 142, 237
BlsI GCNGC 4 cut(s) 137, 140, 143, 238
Bme1390I CCNGG 1 cut(s) 301
Bme18I GGWCC 1 cut(s) 334
BmgT120I GGNCC 1 cut(s) 334
BmrFI CCNGG 1 cut(s) 301
BpmI CTGGAG 1 cut(s) 4
Bpu10I CCTNAGC 1 cut(s) 240
BpuEI CTTGAG 1 cut(s) 274
BpuMI CCSGG 1 cut(s) 301
BsaJI CCNNGG 1 cut(s) 153
Bsc4I CCNNNNNNNGG 1 cut(s) 148
Bse118I RCCGGY 1 cut(s) 278
Bse1I ACTGG 1 cut(s) 328
Bse21I CCTNAGG 1 cut(s) 186
BseDI CCNNGG 1 cut(s) 153
BseLI CCNNNNNNNGG 1 cut(s) 148
BseMII CTCAG 3 cut(s) 88, 177, 231
BseNI ACTGG 1 cut(s) 328
BseX3I CGGCCG 1 cut(s) 139
BseXI GCAGC 1 cut(s) 223
Bsh1236I CGCG 2 cut(s) 135, 144
Bsh1285I CGRYCG 1 cut(s) 142
BshFI GGCC 3 cut(s) 114, 141, 152
BsiEI CGRYCG 1 cut(s) 142
BsiSI CCGG 3 cut(s) 249, 279, 300
BslI CCNNNNNNNGG 1 cut(s) 148
BsmAI GTCTC 1 cut(s) 316
BsmBI CGTCTC 1 cut(s) 316
BsmI GAATGC 1 cut(s) 212
BsnI GGCC 3 cut(s) 114, 141, 152
Bsp143I GATC 1 cut(s) 77
Bsp19I CCATGG 1 cut(s) 153
BspACI CCGC 5 cut(s) 49, 129, 135, 138, 142
BspANI GGCC 3 cut(s) 114, 141, 152
BspCNI CTCAG 3 cut(s) 87, 178, 232
BspFNI CGCG 2 cut(s) 135, 144
BspPI GGATC 1 cut(s) 72
BsrBI CCGCTC 1 cut(s) 131
BsrFI RCCGGY 1 cut(s) 278
BsrI ACTGG 1 cut(s) 328
BssAI RCCGGY 1 cut(s) 278
BssECI CCNNGG 1 cut(s) 153
BssMI GATC 1 cut(s) 77
BssT1I CCWWGG 1 cut(s) 153
Bst6I CTCTTC 1 cut(s) 113
BstC8I GCNNGC 1 cut(s) 133
BstDEI CTNAG 4 cut(s) 74, 186, 240, 346
BstDSI CCRYGG 1 cut(s) 153
BstFNI CGCG 2 cut(s) 135, 144
BstHHI GCGC 2 cut(s) 26, 299
BstKTI GATC 1 cut(s) 80
BstMAI GTCTC 1 cut(s) 316
BstMBI GATC 1 cut(s) 77
BstMCI CGRYCG 1 cut(s) 142
BstMWI GCNNNNNNNGC 4 cut(s) 11, 141, 245, 294
BstSCI CCNGG 1 cut(s) 299
BstUI CGCG 2 cut(s) 135, 144
BstV1I GCAGC 1 cut(s) 223
BstX2I RGATCY 1 cut(s) 77
BstYI RGATCY 1 cut(s) 77
BstZI CGGCCG 1 cut(s) 139
Bsu36I CCTNAGG 1 cut(s) 186
BsuRI GGCC 3 cut(s) 114, 141, 152
BtgI CCRYGG 1 cut(s) 153
BtsI GCAGTG 1 cut(s) 9
BtsIMutI CAGTG 1 cut(s) 9
Cac8I GCNNGC 1 cut(s) 133
CciNI GCGGCCGC 1 cut(s) 139
CfoI GCGC 2 cut(s) 26, 299
Cfr10I RCCGGY 1 cut(s) 278
Cfr13I GGNCC 1 cut(s) 334
CseI GACGC 2 cut(s) 133, 242
CviAII CATG 2 cut(s) 154, 270
DdeI CTNAG 4 cut(s) 74, 186, 240, 346
DpnI GATC 1 cut(s) 79
DpnII GATC 1 cut(s) 77
EaeI YGGCCR 2 cut(s) 139, 150
EagI CGGCCG 1 cut(s) 139
Eam1104I CTCTTC 1 cut(s) 113
EarI CTCTTC 1 cut(s) 113
EciI GGCGGA 1 cut(s) 38
EclXI CGGCCG 1 cut(s) 139
Eco130I CCWWGG 1 cut(s) 153
Eco47I GGWCC 1 cut(s) 334
Eco52I CGGCCG 1 cut(s) 139
Eco81I CCTNAGG 1 cut(s) 186
EcoT14I CCWWGG 1 cut(s) 153
ErhI CCWWGG 1 cut(s) 153
Esp3I CGTCTC 1 cut(s) 316
FaeI CATG 2 cut(s) 157, 273
FaiI YATR 4 cut(s) 155, 271, 375, 443
FalI AAGNNNNNCTT 2 cut(s) 25, 57
FatI CATG 2 cut(s) 153, 269
FblI GTMKAC 1 cut(s) 222
Fnu4HI GCNGC 4 cut(s) 136, 139, 142, 237
Fsp4HI GCNGC 4 cut(s) 136, 139, 142, 237
GlaI GCGC 2 cut(s) 25, 298
GluI GCNGC 4 cut(s) 136, 139, 142, 237
GsuI CTGGAG 1 cut(s) 4
HaeIII GGCC 3 cut(s) 114, 141, 152
HapII CCGG 3 cut(s) 249, 279, 300
HgaI GACGC 2 cut(s) 133, 242
HhaI GCGC 2 cut(s) 26, 299
Hin1II CATG 2 cut(s) 157, 273
Hin6I GCGC 2 cut(s) 24, 297
HinP1I GCGC 2 cut(s) 24, 297
HincII GTYRAC 1 cut(s) 56
HindII GTYRAC 1 cut(s) 56
HinfI GANTC 1 cut(s) 252
HpaII CCGG 3 cut(s) 249, 279, 300
Hpy166II GTNNAC 2 cut(s) 56, 223
Hpy188I TCNGA 4 cut(s) 77, 334, 399, 406
Hpy188III TCNNGA 1 cut(s) 379
Hpy8I GTNNAC 2 cut(s) 56, 223
Hpy99I CGWCG 1 cut(s) 236
HpyCH4IV ACGT 1 cut(s) 225
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 141, 245, 294
HpyF3I CTNAG 4 cut(s) 74, 186, 240, 346
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 2 cut(s) 157, 273
HspAI GCGC 2 cut(s) 24, 297
Kzo9I GATC 1 cut(s) 77
LpnPI CCDG 9 cut(s) 34, 198, 262, 292, 300, 313, 341, 350, 397
Lsp1109I GCAGC 1 cut(s) 223
MaeII ACGT 1 cut(s) 225
MaeIII GTNAC 1 cut(s) 145
MalI GATC 1 cut(s) 79
MbiI CCGCTC 1 cut(s) 131
MboI GATC 1 cut(s) 77
MboII GAAGA 5 cut(s) 100, 114, 224, 227, 443
MflI RGATCY 1 cut(s) 77
MlyI GAGTC 1 cut(s) 246
MmeI TCCRAC 2 cut(s) 312, 422
MslI CAYNNNNRTG 1 cut(s) 152
MspI CCGG 3 cut(s) 249, 279, 300
MspR9I CCNGG 1 cut(s) 301
Mva1269I GAATGC 1 cut(s) 212
MvnI CGCG 2 cut(s) 135, 144
MwoI GCNNNNNNNGC 4 cut(s) 11, 141, 245, 294
NciI CCSGG 1 cut(s) 301
NcoI CCATGG 1 cut(s) 153
NdeII GATC 1 cut(s) 77
NlaIII CATG 2 cut(s) 157, 273
NmuCI GTSAC 1 cut(s) 145
NotI GCGGCCGC 1 cut(s) 139
PctI GAATGC 1 cut(s) 212
PkrI GCNGC 4 cut(s) 137, 140, 143, 238
PleI GAGTC 1 cut(s) 246
PpsI GAGTC 1 cut(s) 246
PspPI GGNCC 1 cut(s) 334
PsuI RGATCY 1 cut(s) 77
RseI CAYNNNNRTG 1 cut(s) 152
SatI GCNGC 4 cut(s) 136, 139, 142, 237
Sau3AI GATC 1 cut(s) 77
Sau96I GGNCC 1 cut(s) 334
SchI GAGTC 1 cut(s) 246
ScrFI CCNGG 1 cut(s) 301
SetI ASST 8 cut(s) 41, 164, 171, 187, 204, 228, 344, 386
SinI GGWCC 1 cut(s) 334
SmiMI CAYNNNNRTG 1 cut(s) 152
SmlI CTYRAG 1 cut(s) 289
SmoI CTYRAG 1 cut(s) 289
SsiI CCGC 5 cut(s) 49, 129, 135, 138, 142
StyD4I CCNGG 1 cut(s) 299
StyI CCWWGG 1 cut(s) 153
TaiI ACGT 1 cut(s) 228
TaqI TCGA 4 cut(s) 204, 231, 255, 417
TauI GCSGC 3 cut(s) 138, 141, 144
TscAI CASTG 1 cut(s) 16
TseFI GTSAC 1 cut(s) 145
TseI GCWGC 1 cut(s) 236
Tsp45I GTSAC 1 cut(s) 145
TspDTI ATGAA 2 cut(s) 166, 369
TspRI CASTG 1 cut(s) 16
VpaK11BI GGWCC 1 cut(s) 334
XmiI GTMKAC 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.