Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0012317

Physical Location & Seq

Genomic Coordinates Forward (+)

20287040 .. 20287722

Gene Structure 683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g20500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGAAGTGGCATCAACCCTTCGGATTCGGATTGCTAGACGCGGAGAGGATTCGATTTGTAGTTGAAATAAGACCAAAAACCTCGTTCAGAGGATTGTGCCCTGATCCACAAGATTTTGCCACGTGGCAGATAAGGGTTGATCCACAATTTCCACAAGCCATCCCATTATCAACACTACTAAGCCTTTCACTCCCACTCTCTTTAGCCACAACACAAAAGCCTTGCAACCAAAGCAAACCAAAAACCATGGCAGCCACAGCAGCAGCAGCTCTCTCAAGCACCATGGTCAGCACCTCCTTCATACGCGGCCAGCCGATGACCAGCCTGCGGTTGTCCCCCAATGTCGGCCAGGCCCTTTTCGGGCTGAAGGCCAACCGCGGAGGGCGTGTGGCGATGGCTGCCTACAAGGTGAAGCTGATCACACCAGAAGGGCCACAAGAGTTTGAGTGCCCTGAGGACGTATACATTCTCGACGCGGCGGAGGAGGCAGGAATTGACCTGCCCTACTCCTGCAGGGCAGGGTCTTGCTCCTCGTGCGCCGGCAAGGTTGTGAGTGGGAGTGTGGATCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0015979 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00195 map00195

Pfam Domains

Protein Families

Fer2

Protein Analysis

191

Amino Acids

20.47

Weight (kDa)

8.56

Isoelectric Point (pI)

38.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10960 AT1G60950
fragaria_vesca	FvH4_5g28820
malus_domestica	MD08G1236800.v1.1 MD15G1428700.v1.1
prunus_persica	Prupe.1G573600_v2.0.a1
pyrus_communis	pycom08g20500
rosa_chinensis	RchiOBHm_Chr7g0221031
rosa_laevigata	RLG00000002182
rosa_multiflora	Rmu_co8393539.1_g000001 Rmu_sc0002105.1_g000004 Rmu_sc0012763.1_g000009
rosa_roxburghii	Rroxscaffold_3G00238810
rosa_rugosa	Rorug07G0200100
rosa_samantha	Rh7AG339400 Rh7BG330400 Rh7CG357400 Rh7DG338100
rosa_wichuraiana	Rw7G028870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	507
AccI	GTMKAC	1 cut(s)	462
AccII	CGCG	4 cut(s)	41, 306, 378, 476
AciI	CCGC	7 cut(s)	41, 306, 328, 376, 378, 476, 479
AclWI	GGATC	2 cut(s)	98, 134
AcoI	YGGCCR	2 cut(s)	307, 346
AcuI	CTGAAG	1 cut(s)	386
AcvI	CACGTG	1 cut(s)	123
AfiI	CCNNNNNNNGG	3 cut(s)	327, 344, 360
AgsI	TTSAA	1 cut(s)	65
AjnI	CCWGG	1 cut(s)	348
AluBI	AGCT	2 cut(s)	269, 415
AluI	AGCT	2 cut(s)	269, 415
AlwI	GGATC	2 cut(s)	98, 134
AoxI	GGCC	5 cut(s)	307, 346, 351, 369, 431
ApeKI	GCWGC	5 cut(s)	251, 260, 263, 266, 398
AspLEI	GCGC	1 cut(s)	539
AspS9I	GGNCC	2 cut(s)	352, 431
AsuHPI	GGTGA	1 cut(s)	421
AxyI	CCTNAGG	1 cut(s)	453
BaeGI	GKGCMC	2 cut(s)	101, 452
BauI	CACGAG	1 cut(s)	532
BbrPI	CACGTG	1 cut(s)	123
BbvI	GCAGC	5 cut(s)	263, 272, 275, 278, 385
BccI	CCATC	2 cut(s)	167, 388
BciT130I	CCWGG	1 cut(s)	350
BclI	TGATCA	1 cut(s)	417
BfaI	CTAG	1 cut(s)	35
BfmI	CTRYAG	1 cut(s)	511
BfuAI	ACCTGC	1 cut(s)	507
BisI	GCNGC	7 cut(s)	252, 261, 264, 267, 307, 399, 477
BlsI	GCNGC	7 cut(s)	253, 262, 265, 268, 308, 400, 478
Bme1390I	CCNGG	1 cut(s)	350
BmgT120I	GGNCC	2 cut(s)	352, 431
BmrFI	CCNGG	1 cut(s)	350
BmsI	GCATC	1 cut(s)	19
BpuEI	CTTGAG	1 cut(s)	259
BsaAI	YACGTR	1 cut(s)	123
BsaJI	CCNNGG	3 cut(s)	246, 282, 376
BsaXI	ACNNNNNCTCC	2 cut(s)	372, 402
Bsc4I	CCNNNNNNNGG	3 cut(s)	327, 344, 360
Bse118I	RCCGGY	1 cut(s)	539
Bse21I	CCTNAGG	1 cut(s)	453
BseBI	CCWGG	1 cut(s)	350
BseDI	CCNNGG	3 cut(s)	246, 282, 376
BseGI	GGATG	1 cut(s)	159
BseLI	CCNNNNNNNGG	3 cut(s)	327, 344, 360
BseMII	CTCAG	1 cut(s)	444
BseRI	GAGGAG	2 cut(s)	497, 520
BseSI	GKGCMC	2 cut(s)	101, 452
BseXI	GCAGC	5 cut(s)	263, 272, 275, 278, 385
Bsh1236I	CGCG	4 cut(s)	41, 306, 378, 476
BshFI	GGCC	5 cut(s)	309, 348, 353, 371, 433
BsiSI	CCGG	1 cut(s)	540
BslFI	GGGAC	1 cut(s)	319
BslI	CCNNNNNNNGG	3 cut(s)	327, 344, 360
BsmFI	GGGAC	1 cut(s)	319
BsnI	GGCC	5 cut(s)	309, 348, 353, 371, 433
Bsp1286I	GDGCHC	2 cut(s)	101, 452
Bsp143I	GATC	4 cut(s)	103, 139, 417, 565
Bsp19I	CCATGG	2 cut(s)	246, 282
BspACI	CCGC	7 cut(s)	41, 306, 328, 376, 378, 476, 479
BspANI	GGCC	5 cut(s)	309, 348, 353, 371, 433
BspCNI	CTCAG	1 cut(s)	445
BspFNI	CGCG	4 cut(s)	41, 306, 378, 476
BspMAI	CTGCAG	1 cut(s)	515
BspMI	ACCTGC	1 cut(s)	507
BspPI	GGATC	2 cut(s)	98, 134
BsrFI	RCCGGY	1 cut(s)	539
BssAI	RCCGGY	1 cut(s)	539
BssECI	CCNNGG	3 cut(s)	246, 282, 376
BssMI	GATC	4 cut(s)	103, 139, 417, 565
BssNAI	GTATAC	1 cut(s)	463
BssSI	CACGAG	1 cut(s)	532
BssT1I	CCWWGG	2 cut(s)	246, 282
Bst1107I	GTATAC	1 cut(s)	463
Bst2BI	CACGAG	1 cut(s)	532
Bst2UI	CCWGG	1 cut(s)	350
BstBAI	YACGTR	1 cut(s)	123
BstC8I	GCNNGC	3 cut(s)	311, 326, 541
BstDEI	CTNAG	2 cut(s)	179, 453
BstDSI	CCRYGG	3 cut(s)	246, 282, 376
BstF5I	GGATG	1 cut(s)	159
BstFNI	CGCG	4 cut(s)	41, 306, 378, 476
BstHHI	GCGC	1 cut(s)	539
BstKTI	GATC	4 cut(s)	106, 142, 420, 568
BstMBI	GATC	4 cut(s)	103, 139, 417, 565
BstMWI	GCNNNNNNNGC	7 cut(s)	231, 257, 260, 266, 398, 485, 534
BstNI	CCWGG	1 cut(s)	350
BstSCI	CCNGG	1 cut(s)	348
BstSFI	CTRYAG	1 cut(s)	511
BstSLI	GKGCMC	2 cut(s)	101, 452
BstUI	CGCG	4 cut(s)	41, 306, 378, 476
BstV1I	GCAGC	5 cut(s)	263, 272, 275, 278, 385
BstZ17I	GTATAC	1 cut(s)	463
Bsu36I	CCTNAGG	1 cut(s)	453
BsuRI	GGCC	5 cut(s)	309, 348, 353, 371, 433
BtgI	CCRYGG	3 cut(s)	246, 282, 376
BtgZI	GCGATG	1 cut(s)	407
BtsCI	GGATG	1 cut(s)	159
BveI	ACCTGC	1 cut(s)	507
Cac8I	GCNNGC	3 cut(s)	311, 326, 541
CfoI	GCGC	1 cut(s)	539
Cfr10I	RCCGGY	1 cut(s)	539
Cfr13I	GGNCC	2 cut(s)	352, 431
Cfr42I	CCGCGG	1 cut(s)	379
CseI	GACGC	2 cut(s)	47, 482
CviAII	CATG	2 cut(s)	247, 283
DdeI	CTNAG	2 cut(s)	179, 453
DpnI	GATC	4 cut(s)	105, 141, 419, 567
DpnII	GATC	4 cut(s)	103, 139, 417, 565
EaeI	YGGCCR	2 cut(s)	307, 346
EciI	GGCGGA	1 cut(s)	494
Eco130I	CCWWGG	2 cut(s)	246, 282
Eco57I	CTGAAG	1 cut(s)	386
Eco72I	CACGTG	1 cut(s)	123
Eco81I	CCTNAGG	1 cut(s)	453
EcoO109I	RGGNCCY	1 cut(s)	352
EcoRII	CCWGG	1 cut(s)	348
EcoT14I	CCWWGG	2 cut(s)	246, 282
ErhI	CCWWGG	2 cut(s)	246, 282
FaeI	CATG	2 cut(s)	250, 286
FaiI	YATR	4 cut(s)	248, 284, 302, 463
FaqI	GGGAC	1 cut(s)	319
FatI	CATG	2 cut(s)	246, 282
FbaI	TGATCA	1 cut(s)	417
FblI	GTMKAC	1 cut(s)	462
Fnu4HI	GCNGC	7 cut(s)	252, 261, 264, 267, 307, 399, 477
FokI	GGATG	1 cut(s)	146
Fsp4HI	GCNGC	7 cut(s)	252, 261, 264, 267, 307, 399, 477
FspBI	CTAG	1 cut(s)	35
GlaI	GCGC	1 cut(s)	538
GluI	GCNGC	7 cut(s)	252, 261, 264, 267, 307, 399, 477
HaeIII	GGCC	5 cut(s)	309, 348, 353, 371, 433
HapII	CCGG	1 cut(s)	540
HgaI	GACGC	2 cut(s)	47, 482
HhaI	GCGC	1 cut(s)	539
Hin1II	CATG	2 cut(s)	250, 286
Hin6I	GCGC	1 cut(s)	537
HinP1I	GCGC	1 cut(s)	537
HinfI	GANTC	2 cut(s)	24, 49
HpaII	CCGG	1 cut(s)	540
HphI	GGTGA	1 cut(s)	421
Hpy166II	GTNNAC	1 cut(s)	463
Hpy188I	TCNGA	3 cut(s)	23, 29, 89
Hpy188III	TCNNGA	1 cut(s)	470
Hpy8I	GTNNAC	1 cut(s)	463
Hpy99I	CGWCG	1 cut(s)	476
HpyAV	CCTTC	4 cut(s)	28, 307, 361, 422
HpyCH4IV	ACGT	2 cut(s)	122, 459
HpyCH4V	TGCA	2 cut(s)	225, 513
HpyF10VI	GCNNNNNNNGC	7 cut(s)	231, 257, 260, 266, 398, 485, 534
HpyF3I	CTNAG	2 cut(s)	179, 453
HpySE526I	ACGT	2 cut(s)	122, 459
Hsp92II	CATG	2 cut(s)	250, 286
HspAI	GCGC	1 cut(s)	537
KroI	GCCGGC	1 cut(s)	539
KroNI	GCCGGC	1 cut(s)	541
Ksp22I	TGATCA	1 cut(s)	417
KspI	CCGCGG	1 cut(s)	379
Kzo9I	GATC	4 cut(s)	103, 139, 417, 565
LmnI	GCTCC	1 cut(s)	533
Lsp1109I	GCAGC	5 cut(s)	263, 272, 275, 278, 385
LweI	GCATC	1 cut(s)	19
MaeI	CTAG	1 cut(s)	35
MaeII	ACGT	2 cut(s)	122, 459
MalI	GATC	4 cut(s)	105, 141, 419, 567
MboI	GATC	4 cut(s)	103, 139, 417, 565
MhlI	GDGCHC	2 cut(s)	101, 452
MluCI	AATT	2 cut(s)	146, 492
MnlI	CCTC	9 cut(s)	39, 83, 91, 304, 374, 448, 475, 478, 541
MroNI	GCCGGC	1 cut(s)	539
MspA1I	CMGCKG	1 cut(s)	378
MspI	CCGG	1 cut(s)	540
MspR9I	CCNGG	1 cut(s)	350
MvaI	CCWGG	1 cut(s)	350
MvnI	CGCG	4 cut(s)	41, 306, 378, 476
MwoI	GCNNNNNNNGC	7 cut(s)	231, 257, 260, 266, 398, 485, 534
NaeI	GCCGGC	1 cut(s)	541
NcoI	CCATGG	2 cut(s)	246, 282
NdeII	GATC	4 cut(s)	103, 139, 417, 565
NgoMIV	GCCGGC	1 cut(s)	539
NlaIII	CATG	2 cut(s)	250, 286
PdiI	GCCGGC	1 cut(s)	541
PfeI	GAWTC	2 cut(s)	24, 49
PkrI	GCNGC	7 cut(s)	253, 262, 265, 268, 308, 400, 478
PmaCI	CACGTG	1 cut(s)	123
PmlI	CACGTG	1 cut(s)	123
Ppu21I	YACGTR	1 cut(s)	123
Psp6I	CCWGG	1 cut(s)	348
PspCI	CACGTG	1 cut(s)	123
PspGI	CCWGG	1 cut(s)	348
PspPI	GGNCC	2 cut(s)	352, 431
PstI	CTGCAG	1 cut(s)	515
SacII	CCGCGG	1 cut(s)	379
SatI	GCNGC	7 cut(s)	252, 261, 264, 267, 307, 399, 477
Sau3AI	GATC	4 cut(s)	103, 139, 417, 565
Sau96I	GGNCC	2 cut(s)	352, 431
SbfI	CCTGCAGG	1 cut(s)	515
ScrFI	CCNGG	1 cut(s)	350
SdaI	CCTGCAGG	1 cut(s)	515
SduI	GDGCHC	2 cut(s)	101, 452
SetI	ASST	9 cut(s)	83, 125, 271, 296, 411, 417, 462, 501, 549
SfaNI	GCATC	1 cut(s)	19
SfcI	CTRYAG	1 cut(s)	511
Sfr303I	CCGCGG	1 cut(s)	379
SgrBI	CCGCGG	1 cut(s)	379
SmlI	CTYRAG	1 cut(s)	274
SmoI	CTYRAG	1 cut(s)	274
Sse8387I	CCTGCAGG	1 cut(s)	515
Sse9I	AATT	2 cut(s)	146, 492
SsiI	CCGC	7 cut(s)	41, 306, 328, 376, 378, 476, 479
SspMI	CTAG	1 cut(s)	35
StyD4I	CCNGG	1 cut(s)	348
StyI	CCWWGG	2 cut(s)	246, 282
TaiI	ACGT	2 cut(s)	125, 462
TaqI	TCGA	2 cut(s)	52, 471
TasI	AATT	2 cut(s)	146, 492
TauI	GCSGC	2 cut(s)	309, 479
TfiI	GAWTC	2 cut(s)	24, 49
TseI	GCWGC	5 cut(s)	251, 260, 263, 266, 398
TspDTI	ATGAA	2 cut(s)	17, 289
XmiI	GTMKAC	1 cut(s)	462
XspI	CTAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.