Rorug07G0200100

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0012317
Physical Location & Seq
Forward (+)
17371240 .. 17372041
802 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0200100.1

Sequence Viewer

Length: 402 bp
ATGGTGTTGCACATGGCAGTTGTAGCTTCTGTGAAACTCAAACTCCTGTCATGTACCTCCCACAGCCTAATAACCCCGGTTGTCAGTGGCTTGATCTGGCCATTTGCCATCAAAGTCTCTTTCAGCCTCAGGAGCGTTCGTCGAGCCTACGCCGATGTGATCCATTCCTCTAGGCTCTTCTTCTTCCAACTGAATCAGATAGTCAGAGCTTTTGATGAACATGATGTTCGTGCTGATCATGATGAACCTGCAGCTATCATTGGCAACAACAACAACAACACTAGATTGGAACGAGCTCTTCGGCTAGTATGCCGGACTGTGACGAACGGCTTCAGACGGTCATCAGAAGCCTTGCAGTTGGATGAGCAAAGCATTCATGCTCTCGCCATGATTGCTCTCTAA

Protein Analysis

133

Amino Acids

14.94

Weight (kDa)

9.68

Isoelectric Point (pI)

46.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10960 AT1G60950
fragaria_vesca FvH4_5g28820
malus_domestica MD08G1236800.v1.1 MD15G1428700.v1.1
prunus_persica Prupe.1G573600_v2.0.a1
pyrus_communis pycom08g20500
rosa_chinensis RchiOBHm_Chr7g0221031
rosa_laevigata RLG00000002182
rosa_multiflora Rmu_co8393539.1_g000001 Rmu_sc0002105.1_g000004 Rmu_sc0012763.1_g000009
rosa_roxburghii Rroxscaffold_3G00238810
rosa_rugosa Rorug07G0200100
rosa_samantha Rh7AG339400 Rh7BG330400 Rh7CG357400 Rh7DG338100
rosa_wichuraiana Rw7G028870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 256
AclWI GGATC 1 cut(s) 154
AcoI YGGCCR 1 cut(s) 98
AcuI CTGAAG 1 cut(s) 316
AfaI GTAC 1 cut(s) 55
AluBI AGCT 4 cut(s) 26, 209, 254, 296
AluI AGCT 4 cut(s) 26, 209, 254, 296
Alw21I GWGCWC 1 cut(s) 298
Alw26I GTCTC 1 cut(s) 121
AlwI GGATC 1 cut(s) 154
AoxI GGCC 1 cut(s) 98
ApeKI GCWGC 1 cut(s) 251
Asp700I GAANNNNTTC 1 cut(s) 329
AsuC2I CCSGG 1 cut(s) 77
AxyI CCTNAGG 1 cut(s) 128
BalI TGGCCA 1 cut(s) 100
BanII GRGCYC 1 cut(s) 298
Bbv12I GWGCWC 1 cut(s) 298
BbvI GCAGC 1 cut(s) 263
BccI CCATC 1 cut(s) 116
BceAI ACGGC 1 cut(s) 343
BclI TGATCA 1 cut(s) 235
BcnI CCSGG 1 cut(s) 77
BcoDI GTCTC 1 cut(s) 121
BfaI CTAG 3 cut(s) 171, 282, 305
BfmI CTRYAG 1 cut(s) 249
BfuAI ACCTGC 1 cut(s) 256
BisI GCNGC 1 cut(s) 252
BlsI GCNGC 1 cut(s) 253
Bme1390I CCNGG 1 cut(s) 77
BmrFI CCNGG 1 cut(s) 77
BpuMI CCSGG 1 cut(s) 77
BsaJI CCNNGG 1 cut(s) 75
BsaXI ACNNNNNCTCC 4 cut(s) 27, 57, 124, 154
Bse21I CCTNAGG 1 cut(s) 128
BseDI CCNNGG 1 cut(s) 75
BseGI GGATG 1 cut(s) 367
BseMII CTCAG 1 cut(s) 142
BseXI GCAGC 1 cut(s) 263
BshFI GGCC 1 cut(s) 100
BsiHKAI GWGCWC 1 cut(s) 298
BsiSI CCGG 2 cut(s) 77, 313
BsmAI GTCTC 1 cut(s) 121
BsmI GAATGC 1 cut(s) 372
BsnI GGCC 1 cut(s) 100
Bsp1286I GDGCHC 1 cut(s) 298
Bsp143I GATC 3 cut(s) 93, 159, 235
BspANI GGCC 1 cut(s) 100
BspCNI CTCAG 1 cut(s) 141
BspHI TCATGA 1 cut(s) 238
BspMAI CTGCAG 1 cut(s) 253
BspMI ACCTGC 1 cut(s) 256
BspPI GGATC 1 cut(s) 154
BspQI GCTCTTC 2 cut(s) 182, 303
BssECI CCNNGG 1 cut(s) 75
BssMI GATC 3 cut(s) 93, 159, 235
Bst4CI ACNGT 2 cut(s) 319, 339
Bst6I CTCTTC 2 cut(s) 182, 303
BstDEI CTNAG 1 cut(s) 128
BstF5I GGATG 1 cut(s) 367
BstKTI GATC 3 cut(s) 96, 162, 238
BstMAI GTCTC 1 cut(s) 121
BstMBI GATC 3 cut(s) 93, 159, 235
BstMWI GCNNNNNNNGC 3 cut(s) 23, 132, 392
BstSCI CCNGG 1 cut(s) 75
BstSFI CTRYAG 1 cut(s) 249
BstV1I GCAGC 1 cut(s) 263
Bsu36I CCTNAGG 1 cut(s) 128
BsuRI GGCC 1 cut(s) 100
BtsCI GGATG 1 cut(s) 367
BtsIMutI CAGTG 1 cut(s) 91
BveI ACCTGC 1 cut(s) 256
CciI TCATGA 1 cut(s) 238
Csp6I GTAC 1 cut(s) 54
CviAII CATG 6 cut(s) 13, 51, 221, 239, 377, 388
CviQI GTAC 1 cut(s) 54
DdeI CTNAG 1 cut(s) 128
DpnI GATC 3 cut(s) 95, 161, 237
DpnII GATC 3 cut(s) 93, 159, 235
EaeI YGGCCR 1 cut(s) 98
Eam1104I CTCTTC 2 cut(s) 182, 303
EarI CTCTTC 2 cut(s) 182, 303
Ecl136II GAGCTC 1 cut(s) 296
Eco24I GRGCYC 1 cut(s) 298
Eco53kI GAGCTC 1 cut(s) 296
Eco57I CTGAAG 1 cut(s) 316
Eco81I CCTNAGG 1 cut(s) 128
EcoICRI GAGCTC 1 cut(s) 296
EcoT38I GRGCYC 1 cut(s) 298
FaeI CATG 6 cut(s) 16, 54, 224, 242, 380, 391
FaiI YATR 7 cut(s) 14, 52, 222, 240, 310, 378, 389
FatI CATG 6 cut(s) 12, 50, 220, 238, 376, 387
FbaI TGATCA 1 cut(s) 235
Fnu4HI GCNGC 1 cut(s) 252
FokI GGATG 1 cut(s) 374
FriOI GRGCYC 1 cut(s) 298
Fsp4HI GCNGC 1 cut(s) 252
FspBI CTAG 3 cut(s) 171, 282, 305
GluI GCNGC 1 cut(s) 252
HaeIII GGCC 1 cut(s) 100
HapII CCGG 2 cut(s) 77, 313
Hin1II CATG 6 cut(s) 16, 54, 224, 242, 380, 391
HinfI GANTC 1 cut(s) 193
HpaII CCGG 2 cut(s) 77, 313
Hpy188I TCNGA 4 cut(s) 198, 206, 335, 346
Hpy188III TCNNGA 2 cut(s) 130, 239
Hpy99I CGWCG 1 cut(s) 144
HpyCH4III ACNGT 2 cut(s) 319, 339
HpyCH4V TGCA 3 cut(s) 10, 251, 355
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 132, 392
HpyF3I CTNAG 1 cut(s) 128
Hsp92II CATG 6 cut(s) 16, 54, 224, 242, 380, 391
Ksp22I TGATCA 1 cut(s) 235
Kzo9I GATC 3 cut(s) 93, 159, 235
LguI GCTCTTC 2 cut(s) 182, 303
LmnI GCTCC 1 cut(s) 132
LpnPI CCDG 6 cut(s) 59, 82, 90, 115, 261, 326
Lsp1109I GCAGC 1 cut(s) 263
MaeI CTAG 3 cut(s) 171, 282, 305
MaeIII GTNAC 1 cut(s) 319
MalI GATC 3 cut(s) 95, 161, 237
MboI GATC 3 cut(s) 93, 159, 235
MboII GAAGA 4 cut(s) 169, 172, 175, 290
MhlI GDGCHC 1 cut(s) 298
MlsI TGGCCA 1 cut(s) 100
MluNI TGGCCA 1 cut(s) 100
MmeI TCCRAC 2 cut(s) 211, 339
MnlI CCTC 3 cut(s) 67, 137, 178
Mox20I TGGCCA 1 cut(s) 100
MroXI GAANNNNTTC 1 cut(s) 329
MscI TGGCCA 1 cut(s) 100
Msp20I TGGCCA 1 cut(s) 100
MspI CCGG 2 cut(s) 77, 313
MspR9I CCNGG 1 cut(s) 77
Mva1269I GAATGC 1 cut(s) 372
MwoI GCNNNNNNNGC 3 cut(s) 23, 132, 392
NciI CCSGG 1 cut(s) 77
NdeII GATC 3 cut(s) 93, 159, 235
NlaIII CATG 6 cut(s) 16, 54, 224, 242, 380, 391
NmuCI GTSAC 1 cut(s) 319
PagI TCATGA 1 cut(s) 238
PciSI GCTCTTC 2 cut(s) 182, 303
PctI GAATGC 1 cut(s) 372
PdmI GAANNNNTTC 1 cut(s) 329
PfeI GAWTC 1 cut(s) 193
PkrI GCNGC 1 cut(s) 253
Psp124BI GAGCTC 1 cut(s) 298
PstI CTGCAG 1 cut(s) 253
RsaI GTAC 1 cut(s) 55
RsaNI GTAC 1 cut(s) 54
SacI GAGCTC 1 cut(s) 298
SapI GCTCTTC 2 cut(s) 182, 303
SatI GCNGC 1 cut(s) 252
Sau3AI GATC 3 cut(s) 93, 159, 235
ScrFI CCNGG 1 cut(s) 77
SduI GDGCHC 1 cut(s) 298
SetI ASST 6 cut(s) 28, 59, 211, 250, 256, 298
SfcI CTRYAG 1 cut(s) 249
SspMI CTAG 3 cut(s) 171, 282, 305
SstI GAGCTC 1 cut(s) 298
StyD4I CCNGG 1 cut(s) 75
TaaI ACNGT 2 cut(s) 319, 339
TaqI TCGA 1 cut(s) 142
TfiI GAWTC 1 cut(s) 193
TscAI CASTG 1 cut(s) 91
TseFI GTSAC 1 cut(s) 319
TseI GCWGC 1 cut(s) 251
Tsp45I GTSAC 1 cut(s) 319
TspDTI ATGAA 3 cut(s) 231, 258, 365
TspRI CASTG 1 cut(s) 91
XmnI GAANNNNTTC 1 cut(s) 329
XspI CTAG 3 cut(s) 171, 282, 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.