FvH4_5g28820

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0012317
Physical Location & Seq
Reverse (-)
19946979 .. 19947413
435 bp
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UTR
Exon/CDS
Intron
FvH4_5g28820.t1

Sequence Viewer

Length: 435 bp
ATGGCAGCTCTCTCCGGCACCATGGTCAGCACCTCCTTCATCCGCGGGCAGCCCATGAGCAGCCTCCGGTCTGCTAATCCCAATGTGGGTCAGGCTCTTTTCGGCTTGAAGTCCAACAACCGCGGTGGGCGTGTTGCCATGGCTGCGTACAAGGTCACTCTCAAGACCCCTGAAGGCGTCACCGAGTTCGAGTGCCCTGATGATGTCTACATTCTCGACGCCGCCGAGGAGGCAGGTCTCGACCTCCCTTACTCCTGTCGCGCCGGTTCCTGCTCTTCCTGCGCCGGCAAGGTTGTTGATGGCACCGTCGACCAGTCTGACCAGAGCTTTCTTGATGATGACCAGATTGATGGTGGCTTTGTCCTCACTTGTGTCGCCTATCCTTCCTCTGATGTTACTCTTGAAACCCACAAGGAGGAGGAGCTCACCGGTTAA

Protein Analysis

145

Amino Acids

15.16

Weight (kDa)

4.28

Isoelectric Point (pI)

46.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fer2 PF00111 57 - 128 5.5e-24 2Fe-2S iron-sulfur cluster binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10960 AT1G60950
fragaria_vesca FvH4_5g28820
malus_domestica MD08G1236800.v1.1 MD15G1428700.v1.1
prunus_persica Prupe.1G573600_v2.0.a1
pyrus_communis pycom08g20500
rosa_chinensis RchiOBHm_Chr7g0221031
rosa_laevigata RLG00000002182
rosa_multiflora Rmu_co8393539.1_g000001 Rmu_sc0002105.1_g000004 Rmu_sc0012763.1_g000009
rosa_roxburghii Rroxscaffold_3G00238810
rosa_rugosa Rorug07G0200100
rosa_samantha Rh7AG339400 Rh7BG330400 Rh7CG357400 Rh7DG338100
rosa_wichuraiana Rw7G028870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 224
AccB1I GGYRCC 2 cut(s) 17, 302
AccI GTMKAC 2 cut(s) 207, 309
AccII CGCG 3 cut(s) 45, 123, 261
AciI CCGC 5 cut(s) 43, 45, 121, 123, 222
AcuI CTGAAG 1 cut(s) 192
AcyI GRCGYC 2 cut(s) 177, 219
AfaI GTAC 1 cut(s) 149
AfiI CCNNNNNNNGG 2 cut(s) 86, 415
AgeI ACCGGT 1 cut(s) 428
AgsI TTSAA 2 cut(s) 109, 404
AluBI AGCT 3 cut(s) 8, 327, 424
AluI AGCT 3 cut(s) 8, 327, 424
Alw21I GWGCWC 1 cut(s) 426
Alw26I GTCTC 1 cut(s) 242
ApeKI GCWGC 4 cut(s) 5, 49, 60, 143
AsiGI ACCGGT 1 cut(s) 428
AspLEI GCGC 2 cut(s) 263, 284
AsuHPI GGTGA 2 cut(s) 172, 418
BaeGI GKGCMC 1 cut(s) 197
BanI GGYRCC 2 cut(s) 17, 302
BanII GRGCYC 1 cut(s) 426
Bbv12I GWGCWC 1 cut(s) 426
BbvI GCAGC 4 cut(s) 17, 61, 72, 130
BccI CCATC 2 cut(s) 293, 344
BcoDI GTCTC 1 cut(s) 242
BfuAI ACCTGC 1 cut(s) 224
BglI GCCNNNNNGGC 1 cut(s) 230
BisI GCNGC 5 cut(s) 6, 50, 61, 144, 222
BlsI GCNGC 5 cut(s) 7, 51, 62, 145, 223
BmiI GGNNCC 3 cut(s) 19, 268, 304
BpuEI CTTGAG 1 cut(s) 146
BsaHI GRCGYC 2 cut(s) 177, 219
BsaI GGTCTC 1 cut(s) 242
BsaJI CCNNGG 5 cut(s) 21, 43, 121, 138, 225
BsaWI WCCGGW 2 cut(s) 66, 428
Bsc4I CCNNNNNNNGG 2 cut(s) 86, 415
Bse118I RCCGGY 3 cut(s) 263, 284, 428
Bse1I ACTGG 1 cut(s) 313
BseDI CCNNGG 5 cut(s) 21, 43, 121, 138, 225
BseGI GGATG 1 cut(s) 39
BseLI CCNNNNNNNGG 2 cut(s) 86, 415
BseNI ACTGG 1 cut(s) 313
BseRI GAGGAG 3 cut(s) 242, 431, 434
BseSI GKGCMC 1 cut(s) 197
BseXI GCAGC 4 cut(s) 17, 61, 72, 130
Bsh1236I CGCG 3 cut(s) 45, 123, 261
BshNI GGYRCC 2 cut(s) 17, 302
BshTI ACCGGT 1 cut(s) 428
BsiHKAI GWGCWC 1 cut(s) 426
BsiSI CCGG 5 cut(s) 15, 67, 264, 285, 429
BslI CCNNNNNNNGG 2 cut(s) 86, 415
BsmAI GTCTC 1 cut(s) 242
Bso31I GGTCTC 1 cut(s) 242
Bsp1286I GDGCHC 2 cut(s) 197, 426
Bsp19I CCATGG 2 cut(s) 21, 138
BspACI CCGC 5 cut(s) 43, 45, 121, 123, 222
BspFNI CGCG 3 cut(s) 45, 123, 261
BspLI GGNNCC 3 cut(s) 19, 268, 304
BspMI ACCTGC 1 cut(s) 224
BspQI GCTCTTC 1 cut(s) 280
BspT107I GGYRCC 2 cut(s) 17, 302
BspTNI GGTCTC 1 cut(s) 242
BsrFI RCCGGY 3 cut(s) 263, 284, 428
BsrI ACTGG 1 cut(s) 313
BssAI RCCGGY 3 cut(s) 263, 284, 428
BssECI CCNNGG 5 cut(s) 21, 43, 121, 138, 225
BssNI GRCGYC 2 cut(s) 177, 219
BssT1I CCWWGG 2 cut(s) 21, 138
Bst4CI ACNGT 1 cut(s) 307
Bst6I CTCTTC 1 cut(s) 280
BstACI GRCGYC 2 cut(s) 177, 219
BstC8I GCNNGC 2 cut(s) 47, 286
BstDSI CCRYGG 4 cut(s) 21, 43, 121, 138
BstF5I GGATG 1 cut(s) 39
BstFNI CGCG 3 cut(s) 45, 123, 261
BstHHI GCGC 2 cut(s) 263, 284
BstMAI GTCTC 1 cut(s) 242
BstMWI GCNNNNNNNGC 3 cut(s) 143, 230, 279
BstSLI GKGCMC 1 cut(s) 197
BstUI CGCG 3 cut(s) 45, 123, 261
BstV1I GCAGC 4 cut(s) 17, 61, 72, 130
BstXI CCANNNNNNTGG 1 cut(s) 350
BtgI CCRYGG 4 cut(s) 21, 43, 121, 138
BtsCI GGATG 1 cut(s) 39
BveI ACCTGC 1 cut(s) 224
Cac8I GCNNGC 2 cut(s) 47, 286
CfoI GCGC 2 cut(s) 263, 284
Cfr10I RCCGGY 3 cut(s) 263, 284, 428
Cfr42I CCGCGG 2 cut(s) 46, 124
CseI GACGC 2 cut(s) 166, 227
Csp6I GTAC 1 cut(s) 148
CspAI ACCGGT 1 cut(s) 428
CspCI CAANNNNNGTGG 2 cut(s) 106, 141
CviAII CATG 3 cut(s) 22, 55, 139
CviJI RGCY 9 cut(s) 8, 52, 63, 95, 105, 143, 327, 357, 424
CviKI_1 RGCY 9 cut(s) 8, 52, 63, 95, 105, 143, 327, 357, 424
CviQI GTAC 1 cut(s) 148
Eam1104I CTCTTC 1 cut(s) 280
EarI CTCTTC 1 cut(s) 280
Ecl136II GAGCTC 1 cut(s) 424
Eco130I CCWWGG 2 cut(s) 21, 138
Eco24I GRGCYC 1 cut(s) 426
Eco31I GGTCTC 1 cut(s) 242
Eco53kI GAGCTC 1 cut(s) 424
Eco57I CTGAAG 1 cut(s) 192
EcoICRI GAGCTC 1 cut(s) 424
EcoT14I CCWWGG 2 cut(s) 21, 138
EcoT38I GRGCYC 1 cut(s) 426
ErhI CCWWGG 2 cut(s) 21, 138
FaeI CATG 3 cut(s) 25, 58, 142
FaiI YATR 3 cut(s) 23, 56, 140
FatI CATG 3 cut(s) 21, 54, 138
FauI CCCGC 1 cut(s) 38
FblI GTMKAC 2 cut(s) 207, 309
Fnu4HI GCNGC 5 cut(s) 6, 50, 61, 144, 222
FokI GGATG 1 cut(s) 26
FriOI GRGCYC 1 cut(s) 426
Fsp4HI GCNGC 5 cut(s) 6, 50, 61, 144, 222
GlaI GCGC 2 cut(s) 262, 283
GluI GCNGC 5 cut(s) 6, 50, 61, 144, 222
HapII CCGG 5 cut(s) 15, 67, 264, 285, 429
HgaI GACGC 2 cut(s) 166, 227
HhaI GCGC 2 cut(s) 263, 284
Hin1I GRCGYC 2 cut(s) 177, 219
Hin1II CATG 3 cut(s) 25, 58, 142
Hin6I GCGC 2 cut(s) 261, 282
HinP1I GCGC 2 cut(s) 261, 282
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HpaII CCGG 5 cut(s) 15, 67, 264, 285, 429
HphI GGTGA 2 cut(s) 172, 418
Hpy166II GTNNAC 2 cut(s) 208, 310
Hpy188I TCNGA 2 cut(s) 319, 391
Hpy188III TCNNGA 5 cut(s) 163, 215, 239, 332, 401
Hpy8I GTNNAC 2 cut(s) 208, 310
Hpy99I CGWCG 2 cut(s) 221, 311
HpyAV CCTTC 3 cut(s) 46, 167, 393
HpyCH4III ACNGT 1 cut(s) 307
HpyF10VI GCNNNNNNNGC 3 cut(s) 143, 230, 279
Hsp92I GRCGYC 2 cut(s) 177, 219
Hsp92II CATG 3 cut(s) 25, 58, 142
HspAI GCGC 2 cut(s) 261, 282
KroI GCCGGC 1 cut(s) 284
KroNI GCCGGC 1 cut(s) 286
KspI CCGCGG 2 cut(s) 46, 124
LguI GCTCTTC 1 cut(s) 280
LmnI GCTCC 1 cut(s) 421
Lsp1109I GCAGC 4 cut(s) 17, 61, 72, 130
MaeIII GTNAC 3 cut(s) 154, 178, 394
MboII GAAGA 1 cut(s) 267
MhlI GDGCHC 2 cut(s) 197, 426
MmeI TCCRAC 1 cut(s) 138
MnlI CCTC 9 cut(s) 43, 74, 220, 223, 254, 374, 397, 409, 412
MroNI GCCGGC 1 cut(s) 284
MseI TTAA 1 cut(s) 433
MspA1I CMGCKG 2 cut(s) 45, 123
MspI CCGG 5 cut(s) 15, 67, 264, 285, 429
MvnI CGCG 3 cut(s) 45, 123, 261
MwoI GCNNNNNNNGC 3 cut(s) 143, 230, 279
NaeI GCCGGC 1 cut(s) 286
NcoI CCATGG 2 cut(s) 21, 138
NgoMIV GCCGGC 1 cut(s) 284
NlaIII CATG 3 cut(s) 25, 58, 142
NlaIV GGNNCC 3 cut(s) 19, 268, 304
NmeAIII GCCGAG 1 cut(s) 250
NmuCI GTSAC 2 cut(s) 154, 178
PciSI GCTCTTC 1 cut(s) 280
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PdiI GCCGGC 1 cut(s) 286
PinAI ACCGGT 1 cut(s) 428
PkrI GCNGC 5 cut(s) 7, 51, 62, 145, 223
Psp124BI GAGCTC 1 cut(s) 426
PspN4I GGNNCC 3 cut(s) 19, 268, 304
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
SacI GAGCTC 1 cut(s) 426
SacII CCGCGG 2 cut(s) 46, 124
SalI GTCGAC 1 cut(s) 308
SapI GCTCTTC 1 cut(s) 280
SaqAI TTAA 1 cut(s) 433
SatI GCNGC 5 cut(s) 6, 50, 61, 144, 222
SduI GDGCHC 2 cut(s) 197, 426
SetI ASST 8 cut(s) 10, 35, 156, 238, 246, 294, 329, 426
Sfr303I CCGCGG 2 cut(s) 46, 124
SgrBI CCGCGG 2 cut(s) 46, 124
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
SsiI CCGC 5 cut(s) 43, 45, 121, 123, 222
SstI GAGCTC 1 cut(s) 426
StyI CCWWGG 2 cut(s) 21, 138
TaaI ACNGT 1 cut(s) 307
TaqI TCGA 4 cut(s) 189, 216, 240, 309
TauI GCSGC 1 cut(s) 224
Tru1I TTAA 1 cut(s) 433
Tru9I TTAA 1 cut(s) 433
TseFI GTSAC 2 cut(s) 154, 178
TseI GCWGC 4 cut(s) 5, 49, 60, 143
Tsp45I GTSAC 2 cut(s) 154, 178
TspDTI ATGAA 1 cut(s) 28
XcmI CCANNNNNNNNNTGG 1 cut(s) 350
XmiI GTMKAC 2 cut(s) 207, 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.