Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0012317

Physical Location & Seq

Genomic Coordinates Forward (+)

30434406 .. 30435116

Gene Structure 711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1236800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGCAGCCACAGCAGCAGCAGCTGTCTCAAGCACCATGGTCAGCACCTCCTTCATCCGCGGCCAGCCGATGACCAGCCTGCGGTTGTCCCCCAACGTCGGCCAGGCCCTTTACGGGCTGAAGGCCAACCGCGGAGGGCGTGTGGCGATGGCTGCCTACAAGGTGAAGTTGATCACACCAGAAGGGCCACAAGAGTTTGAGTGCCCTGAGGACGTATACATTCTCGACGCGGCGGAGGAGGCAGGAATTGACCTGCCCTACTCCTGCAGGGCAGGGTCTTGCTCCTCGTGCGCCGGCAAGGTTGTGAGTGGGAGTGTGGATCAGTCGGACCAGAGCTTTCTGGATGATGATCAGATTGGCGGTGGATTTGTGCTCACCTGCGTGGCGTATCCGGCGTCTGACGTCACACTTGAGACCCACAAGGAAGAGGAGCTTACTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0015979 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00195 map00195

Pfam Domains

Protein Families

Fer2

Protein Analysis

148

Amino Acids

15.32

Weight (kDa)

4.42

Isoelectric Point (pI)

48.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fer2	PF00111	61 - 131	2.8e-24	2Fe-2S iron-sulfur cluster binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10960 AT1G60950
fragaria_vesca	FvH4_5g28820
malus_domestica	MD08G1236800.v1.1 MD15G1428700.v1.1
prunus_persica	Prupe.1G573600_v2.0.a1
pyrus_communis	pycom08g20500
rosa_chinensis	RchiOBHm_Chr7g0221031
rosa_laevigata	RLG00000002182
rosa_multiflora	Rmu_co8393539.1_g000001 Rmu_sc0002105.1_g000004 Rmu_sc0012763.1_g000009
rosa_roxburghii	Rroxscaffold_3G00238810
rosa_rugosa	Rorug07G0200100
rosa_samantha	Rh7AG339400 Rh7BG330400 Rh7CG357400 Rh7DG338100
rosa_wichuraiana	Rw7G028870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	386
AatII	GACGTC	1 cut(s)	405
Acc36I	ACCTGC	2 cut(s)	261, 386
AccI	GTMKAC	1 cut(s)	216
AccII	CGCG	3 cut(s)	60, 132, 230
AciI	CCGC	8 cut(s)	58, 60, 82, 130, 132, 230, 233, 360
AclWI	GGATC	1 cut(s)	327
AcoI	YGGCCR	2 cut(s)	61, 100
AcuI	CTGAAG	1 cut(s)	140
AcyI	GRCGYC	2 cut(s)	395, 402
AfiI	CCNNNNNNNGG	3 cut(s)	81, 98, 114
AjnI	CCWGG	1 cut(s)	102
AleI	CACNNNNGTG	1 cut(s)	380
AluBI	AGCT	3 cut(s)	23, 336, 433
AluI	AGCT	3 cut(s)	23, 336, 433
Alw21I	GWGCWC	1 cut(s)	375
Alw26I	GTCTC	2 cut(s)	31, 407
AlwI	GGATC	1 cut(s)	327
AlwNI	CAGNNNCTG	1 cut(s)	23
AoxI	GGCC	5 cut(s)	61, 100, 105, 123, 185
ApeKI	GCWGC	5 cut(s)	5, 14, 17, 20, 152
AspLEI	GCGC	1 cut(s)	293
AspS9I	GGNCC	3 cut(s)	106, 185, 328
AsuHPI	GGTGA	2 cut(s)	175, 367
AvaII	GGWCC	1 cut(s)	328
AxyI	CCTNAGG	1 cut(s)	207
BaeGI	GKGCMC	1 cut(s)	206
BauI	CACGAG	1 cut(s)	286
Bbv12I	GWGCWC	1 cut(s)	375
BbvI	GCAGC	5 cut(s)	17, 26, 29, 32, 139
BccI	CCATC	1 cut(s)	142
BciT130I	CCWGG	1 cut(s)	104
BciVI	GTATCC	1 cut(s)	399
BclI	TGATCA	2 cut(s)	171, 349
BcoDI	GTCTC	2 cut(s)	31, 407
BfmI	CTRYAG	1 cut(s)	265
BfuAI	ACCTGC	2 cut(s)	261, 386
BfuI	GTATCC	1 cut(s)	399
BisI	GCNGC	7 cut(s)	6, 15, 18, 21, 61, 153, 231
BlsI	GCNGC	7 cut(s)	7, 16, 19, 22, 62, 154, 232
Bme1390I	CCNGG	1 cut(s)	104
Bme18I	GGWCC	1 cut(s)	328
BmgT120I	GGNCC	3 cut(s)	106, 185, 328
BmrFI	CCNGG	1 cut(s)	104
BpuEI	CTTGAG	2 cut(s)	13, 431
BsaBI	GATNNNNATC	1 cut(s)	348
BsaHI	GRCGYC	2 cut(s)	395, 402
BsaI	GGTCTC	1 cut(s)	407
BsaJI	CCNNGG	3 cut(s)	36, 58, 130
BsaXI	ACNNNNNCTCC	2 cut(s)	126, 156
Bsc4I	CCNNNNNNNGG	3 cut(s)	81, 98, 114
Bse118I	RCCGGY	1 cut(s)	293
Bse1I	ACTGG	1 cut(s)	442
Bse21I	CCTNAGG	1 cut(s)	207
Bse8I	GATNNNNATC	1 cut(s)	348
BseBI	CCWGG	1 cut(s)	104
BseDI	CCNNGG	3 cut(s)	36, 58, 130
BseGI	GGATG	2 cut(s)	54, 349
BseJI	GATNNNNATC	1 cut(s)	348
BseLI	CCNNNNNNNGG	3 cut(s)	81, 98, 114
BseMII	CTCAG	1 cut(s)	198
BseNI	ACTGG	1 cut(s)	442
BseRI	GAGGAG	3 cut(s)	251, 274, 443
BseSI	GKGCMC	1 cut(s)	206
BseXI	GCAGC	5 cut(s)	17, 26, 29, 32, 139
Bsh1236I	CGCG	3 cut(s)	60, 132, 230
BshFI	GGCC	5 cut(s)	63, 102, 107, 125, 187
BsiHKAI	GWGCWC	1 cut(s)	375
BsiSI	CCGG	2 cut(s)	294, 392
BslFI	GGGAC	1 cut(s)	73
BslI	CCNNNNNNNGG	3 cut(s)	81, 98, 114
BsmAI	GTCTC	2 cut(s)	31, 407
BsmFI	GGGAC	1 cut(s)	73
BsnI	GGCC	5 cut(s)	63, 102, 107, 125, 187
Bso31I	GGTCTC	1 cut(s)	407
Bsp1286I	GDGCHC	2 cut(s)	206, 375
Bsp143I	GATC	3 cut(s)	171, 319, 349
Bsp19I	CCATGG	1 cut(s)	36
BspACI	CCGC	8 cut(s)	58, 60, 82, 130, 132, 230, 233, 360
BspANI	GGCC	5 cut(s)	63, 102, 107, 125, 187
BspCNI	CTCAG	1 cut(s)	199
BspFNI	CGCG	3 cut(s)	60, 132, 230
BspMAI	CTGCAG	1 cut(s)	269
BspMI	ACCTGC	2 cut(s)	261, 386
BspPI	GGATC	1 cut(s)	327
BspTNI	GGTCTC	1 cut(s)	407
BsrFI	RCCGGY	1 cut(s)	293
BsrI	ACTGG	1 cut(s)	442
BssAI	RCCGGY	1 cut(s)	293
BssECI	CCNNGG	3 cut(s)	36, 58, 130
BssMI	GATC	3 cut(s)	171, 319, 349
BssNAI	GTATAC	1 cut(s)	217
BssNI	GRCGYC	2 cut(s)	395, 402
BssSI	CACGAG	1 cut(s)	286
BssT1I	CCWWGG	1 cut(s)	36
Bst1107I	GTATAC	1 cut(s)	217
Bst2BI	CACGAG	1 cut(s)	286
Bst2UI	CCWGG	1 cut(s)	104
Bst6I	CTCTTC	1 cut(s)	420
BstACI	GRCGYC	2 cut(s)	395, 402
BstC8I	GCNNGC	3 cut(s)	65, 80, 295
BstDEI	CTNAG	1 cut(s)	207
BstDSI	CCRYGG	3 cut(s)	36, 58, 130
BstF5I	GGATG	2 cut(s)	54, 349
BstFNI	CGCG	3 cut(s)	60, 132, 230
BstHHI	GCGC	1 cut(s)	293
BstKTI	GATC	3 cut(s)	174, 322, 352
BstMAI	GTCTC	2 cut(s)	31, 407
BstMBI	GATC	3 cut(s)	171, 319, 349
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 14, 20, 152, 239, 288, 392
BstNI	CCWGG	1 cut(s)	104
BstSCI	CCNGG	1 cut(s)	102
BstSFI	CTRYAG	1 cut(s)	265
BstSLI	GKGCMC	1 cut(s)	206
BstUI	CGCG	3 cut(s)	60, 132, 230
BstV1I	GCAGC	5 cut(s)	17, 26, 29, 32, 139
BstZ17I	GTATAC	1 cut(s)	217
Bsu36I	CCTNAGG	1 cut(s)	207
BsuI	GTATCC	1 cut(s)	399
BsuRI	GGCC	5 cut(s)	63, 102, 107, 125, 187
BtgI	CCRYGG	3 cut(s)	36, 58, 130
BtgZI	GCGATG	1 cut(s)	161
BtsCI	GGATG	2 cut(s)	54, 349
BveI	ACCTGC	2 cut(s)	261, 386
Cac8I	GCNNGC	3 cut(s)	65, 80, 295
CaiI	CAGNNNCTG	1 cut(s)	23
CfoI	GCGC	1 cut(s)	293
Cfr10I	RCCGGY	1 cut(s)	293
Cfr13I	GGNCC	3 cut(s)	106, 185, 328
Cfr42I	CCGCGG	2 cut(s)	61, 133
CseI	GACGC	2 cut(s)	236, 384
CviAII	CATG	1 cut(s)	37
DdeI	CTNAG	1 cut(s)	207
DpnI	GATC	3 cut(s)	173, 321, 351
DpnII	GATC	3 cut(s)	171, 319, 349
EaeI	YGGCCR	2 cut(s)	61, 100
Eam1104I	CTCTTC	1 cut(s)	420
EarI	CTCTTC	1 cut(s)	420
EciI	GGCGGA	1 cut(s)	248
Eco130I	CCWWGG	1 cut(s)	36
Eco31I	GGTCTC	1 cut(s)	407
Eco47I	GGWCC	1 cut(s)	328
Eco57I	CTGAAG	1 cut(s)	140
Eco81I	CCTNAGG	1 cut(s)	207
EcoO109I	RGGNCCY	1 cut(s)	106
EcoRII	CCWGG	1 cut(s)	102
EcoT14I	CCWWGG	1 cut(s)	36
ErhI	CCWWGG	1 cut(s)	36
FaeI	CATG	1 cut(s)	40
FaiI	YATR	2 cut(s)	38, 217
FalI	AAGNNNNNCTT	1 cut(s)	417
FaqI	GGGAC	1 cut(s)	73
FatI	CATG	1 cut(s)	36
FbaI	TGATCA	2 cut(s)	171, 349
FblI	GTMKAC	1 cut(s)	216
Fnu4HI	GCNGC	7 cut(s)	6, 15, 18, 21, 61, 153, 231
FokI	GGATG	2 cut(s)	41, 356
Fsp4HI	GCNGC	7 cut(s)	6, 15, 18, 21, 61, 153, 231
GlaI	GCGC	1 cut(s)	292
GluI	GCNGC	7 cut(s)	6, 15, 18, 21, 61, 153, 231
HaeIII	GGCC	5 cut(s)	63, 102, 107, 125, 187
HapII	CCGG	2 cut(s)	294, 392
HgaI	GACGC	2 cut(s)	236, 384
HhaI	GCGC	1 cut(s)	293
Hin1I	GRCGYC	2 cut(s)	395, 402
Hin1II	CATG	1 cut(s)	40
Hin6I	GCGC	1 cut(s)	291
HinP1I	GCGC	1 cut(s)	291
HpaII	CCGG	2 cut(s)	294, 392
HphI	GGTGA	2 cut(s)	175, 367
Hpy166II	GTNNAC	1 cut(s)	217
Hpy188I	TCNGA	3 cut(s)	328, 354, 400
Hpy188III	TCNNGA	2 cut(s)	224, 341
Hpy8I	GTNNAC	1 cut(s)	217
Hpy99I	CGWCG	2 cut(s)	101, 230
HpyAV	CCTTC	3 cut(s)	61, 115, 176
HpyCH4IV	ACGT	3 cut(s)	96, 213, 402
HpyCH4V	TGCA	1 cut(s)	267
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 14, 20, 152, 239, 288, 392
HpyF3I	CTNAG	1 cut(s)	207
HpySE526I	ACGT	3 cut(s)	96, 213, 402
Hsp92I	GRCGYC	2 cut(s)	395, 402
Hsp92II	CATG	1 cut(s)	40
HspAI	GCGC	1 cut(s)	291
KroI	GCCGGC	1 cut(s)	293
KroNI	GCCGGC	1 cut(s)	295
Ksp22I	TGATCA	2 cut(s)	171, 349
KspI	CCGCGG	2 cut(s)	61, 133
Kzo9I	GATC	3 cut(s)	171, 319, 349
LmnI	GCTCC	2 cut(s)	287, 430
Lsp1109I	GCAGC	5 cut(s)	17, 26, 29, 32, 139
MaeII	ACGT	3 cut(s)	96, 213, 402
MaeIII	GTNAC	1 cut(s)	403
MalI	GATC	3 cut(s)	173, 321, 351
MboI	GATC	3 cut(s)	171, 319, 349
MboII	GAAGA	1 cut(s)	437
MhlI	GDGCHC	2 cut(s)	206, 375
MluCI	AATT	1 cut(s)	246
MmeI	TCCRAC	1 cut(s)	306
MnlI	CCTC	7 cut(s)	58, 128, 202, 229, 232, 295, 421
MroNI	GCCGGC	1 cut(s)	293
MseI	TTAA	1 cut(s)	442
MslI	CAYNNNNRTG	1 cut(s)	380
MspA1I	CMGCKG	3 cut(s)	23, 60, 132
MspI	CCGG	2 cut(s)	294, 392
MspR9I	CCNGG	1 cut(s)	104
MvaI	CCWGG	1 cut(s)	104
MvnI	CGCG	3 cut(s)	60, 132, 230
MwoI	GCNNNNNNNGC	7 cut(s)	11, 14, 20, 152, 239, 288, 392
NaeI	GCCGGC	1 cut(s)	295
NcoI	CCATGG	1 cut(s)	36
NdeII	GATC	3 cut(s)	171, 319, 349
NgoMIV	GCCGGC	1 cut(s)	293
NlaIII	CATG	1 cut(s)	40
NmuCI	GTSAC	1 cut(s)	403
OliI	CACNNNNGTG	1 cut(s)	380
PaqCI	CACCTGC	1 cut(s)	386
PdiI	GCCGGC	1 cut(s)	295
PkrI	GCNGC	7 cut(s)	7, 16, 19, 22, 62, 154, 232
Psp6I	CCWGG	1 cut(s)	102
PspGI	CCWGG	1 cut(s)	102
PspPI	GGNCC	3 cut(s)	106, 185, 328
PstI	CTGCAG	1 cut(s)	269
PstNI	CAGNNNCTG	1 cut(s)	23
PvuII	CAGCTG	1 cut(s)	23
RseI	CAYNNNNRTG	1 cut(s)	380
SacII	CCGCGG	2 cut(s)	61, 133
SaqAI	TTAA	1 cut(s)	442
SatI	GCNGC	7 cut(s)	6, 15, 18, 21, 61, 153, 231
Sau3AI	GATC	3 cut(s)	171, 319, 349
Sau96I	GGNCC	3 cut(s)	106, 185, 328
SbfI	CCTGCAGG	1 cut(s)	269
ScrFI	CCNGG	1 cut(s)	104
SdaI	CCTGCAGG	1 cut(s)	269
SduI	GDGCHC	2 cut(s)	206, 375
SfcI	CTRYAG	1 cut(s)	265
Sfr303I	CCGCGG	2 cut(s)	61, 133
SgrBI	CCGCGG	2 cut(s)	61, 133
SinI	GGWCC	1 cut(s)	328
SmiMI	CAYNNNNRTG	1 cut(s)	380
SmlI	CTYRAG	2 cut(s)	28, 410
SmoI	CTYRAG	2 cut(s)	28, 410
Sse8387I	CCTGCAGG	1 cut(s)	269
Sse9I	AATT	1 cut(s)	246
SsiI	CCGC	8 cut(s)	58, 60, 82, 130, 132, 230, 233, 360
StyD4I	CCNGG	1 cut(s)	102
StyI	CCWWGG	1 cut(s)	36
TaiI	ACGT	3 cut(s)	99, 216, 405
TaqI	TCGA	1 cut(s)	225
TasI	AATT	1 cut(s)	246
TauI	GCSGC	2 cut(s)	63, 233
Tru1I	TTAA	1 cut(s)	442
Tru9I	TTAA	1 cut(s)	442
TseFI	GTSAC	1 cut(s)	403
TseI	GCWGC	5 cut(s)	5, 14, 17, 20, 152
Tsp45I	GTSAC	1 cut(s)	403
TspDTI	ATGAA	1 cut(s)	43
VpaK11BI	GGWCC	1 cut(s)	328
XmiI	GTMKAC	1 cut(s)	216
ZraI	GACGTC	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.