RchiOBHm_Chr7g0221031

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0012317
Physical Location & Seq
Reverse (-)
41949233 .. 41949958
726 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19782

Sequence Viewer

Length: 429 bp
ATGGCGGCTCTCTCCGGCACCATGGTCAGCACCTCCTTCATCCGTGGGCAGCCCATGAGCAGCCTCAGGTTGGCCCCCAACGTGGGTCAGGCCCTTTTCGGGTTGAAGGCCAACCGTGGCGGCCGTGTTGCCATGGCTGCATACAAGGTCACGCTCAAGACCCCTGAAGGCGTTTCCGAGTTCGAGTGCCCTGATGATGTCTACATTCTCGACGCCGCCGAGGAGGCCGGTCTTGACCTCCCGTACTCTTGCCGCGCCGGTTCTTGCTCTTCCTGCGCCGGAAAGGTTGTTGCTGGCAGCGTCGATCAGTCTGACCAGAGTTTCCTTGATGATGACCAGATAGACGGTGGATTTGTCCTCACCTGTGTCGCCTATCCTTCCTCTGATGTTACACTCGAAACCCACAAGGAAGAGGAGCTCACTGGTTAA

Protein Analysis

142

Amino Acids

14.87

Weight (kDa)

4.33

Isoelectric Point (pI)

47.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fer2 PF00111 57 - 126 1.4e-23 2Fe-2S iron-sulfur cluster binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10960 AT1G60950
fragaria_vesca FvH4_5g28820
malus_domestica MD08G1236800.v1.1 MD15G1428700.v1.1
prunus_persica Prupe.1G573600_v2.0.a1
pyrus_communis pycom08g20500
rosa_chinensis RchiOBHm_Chr7g0221031
rosa_laevigata RLG00000002182
rosa_multiflora Rmu_co8393539.1_g000001 Rmu_sc0002105.1_g000004 Rmu_sc0012763.1_g000009
rosa_roxburghii Rroxscaffold_3G00238810
rosa_rugosa Rorug07G0200100
rosa_samantha Rh7AG339400 Rh7BG330400 Rh7CG357400 Rh7DG338100
rosa_wichuraiana Rw7G028870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 17
AccI GTMKAC 1 cut(s) 201
AccII CGCG 1 cut(s) 255
AciI CCGC 4 cut(s) 5, 120, 216, 253
AcoI YGGCCR 1 cut(s) 121
AcuI CTGAAG 1 cut(s) 186
AcyI GRCGYC 1 cut(s) 213
AfaI GTAC 1 cut(s) 245
AfiI CCNNNNNNNGG 4 cut(s) 70, 82, 83, 99
AgsI TTSAA 1 cut(s) 106
AluBI AGCT 1 cut(s) 418
AluI AGCT 1 cut(s) 418
Alw21I GWGCWC 1 cut(s) 420
AoxI GGCC 5 cut(s) 72, 90, 108, 121, 225
ApeKI GCWGC 4 cut(s) 49, 60, 137, 297
ArsI GACNNNNNNTTYG 2 cut(s) 335, 367
AspLEI GCGC 2 cut(s) 257, 278
AspS9I GGNCC 2 cut(s) 73, 91
AsuHPI GGTGA 1 cut(s) 352
AxyI CCTNAGG 1 cut(s) 65
BaeGI GKGCMC 1 cut(s) 191
BanI GGYRCC 1 cut(s) 17
BanII GRGCYC 1 cut(s) 420
Bbv12I GWGCWC 1 cut(s) 420
BbvI GCAGC 4 cut(s) 61, 72, 124, 309
BceAI ACGGC 1 cut(s) 108
BglI GCCNNNNNGGC 1 cut(s) 224
BisI GCNGC 8 cut(s) 6, 50, 61, 121, 138, 216, 253, 298
BlsI GCNGC 8 cut(s) 7, 51, 62, 122, 139, 217, 254, 299
BmgT120I GGNCC 2 cut(s) 73, 91
BmiI GGNNCC 2 cut(s) 19, 75
BpuEI CTTGAG 1 cut(s) 140
BsaHI GRCGYC 1 cut(s) 213
BsaJI CCNNGG 5 cut(s) 21, 43, 115, 132, 219
Bsc4I CCNNNNNNNGG 4 cut(s) 70, 82, 83, 99
Bse118I RCCGGY 2 cut(s) 227, 257
Bse1I ACTGG 1 cut(s) 427
Bse21I CCTNAGG 1 cut(s) 65
BseDI CCNNGG 5 cut(s) 21, 43, 115, 132, 219
BseGI GGATG 1 cut(s) 39
BseLI CCNNNNNNNGG 4 cut(s) 70, 82, 83, 99
BseMII CTCAG 1 cut(s) 79
BseNI ACTGG 1 cut(s) 427
BseRI GAGGAG 2 cut(s) 236, 428
BseSI GKGCMC 1 cut(s) 191
BseX3I CGGCCG 1 cut(s) 121
BseXI GCAGC 4 cut(s) 61, 72, 124, 309
Bsh1236I CGCG 1 cut(s) 255
Bsh1285I CGRYCG 1 cut(s) 124
BshFI GGCC 5 cut(s) 74, 92, 110, 123, 227
BshNI GGYRCC 1 cut(s) 17
BsiEI CGRYCG 1 cut(s) 124
BsiHKAI GWGCWC 1 cut(s) 420
BsiSI CCGG 4 cut(s) 15, 228, 258, 279
BslI CCNNNNNNNGG 4 cut(s) 70, 82, 83, 99
BsnI GGCC 5 cut(s) 74, 92, 110, 123, 227
Bsp1286I GDGCHC 2 cut(s) 191, 420
Bsp143I GATC 1 cut(s) 304
Bsp19I CCATGG 2 cut(s) 21, 132
BspACI CCGC 4 cut(s) 5, 120, 216, 253
BspANI GGCC 5 cut(s) 74, 92, 110, 123, 227
BspCNI CTCAG 1 cut(s) 78
BspFNI CGCG 1 cut(s) 255
BspLI GGNNCC 2 cut(s) 19, 75
BspQI GCTCTTC 1 cut(s) 274
BspT107I GGYRCC 1 cut(s) 17
BsrFI RCCGGY 2 cut(s) 227, 257
BsrI ACTGG 1 cut(s) 427
BssAI RCCGGY 2 cut(s) 227, 257
BssECI CCNNGG 5 cut(s) 21, 43, 115, 132, 219
BssMI GATC 1 cut(s) 304
BssNI GRCGYC 1 cut(s) 213
BssT1I CCWWGG 2 cut(s) 21, 132
Bst4CI ACNGT 2 cut(s) 116, 347
Bst6I CTCTTC 2 cut(s) 274, 405
BstACI GRCGYC 1 cut(s) 213
BstC8I GCNNGC 1 cut(s) 295
BstDEI CTNAG 1 cut(s) 65
BstDSI CCRYGG 4 cut(s) 21, 43, 115, 132
BstF5I GGATG 1 cut(s) 39
BstFNI CGCG 1 cut(s) 255
BstHHI GCGC 2 cut(s) 257, 278
BstKTI GATC 1 cut(s) 307
BstMBI GATC 1 cut(s) 304
BstMCI CGRYCG 1 cut(s) 124
BstMWI GCNNNNNNNGC 3 cut(s) 137, 224, 273
BstSLI GKGCMC 1 cut(s) 191
BstUI CGCG 1 cut(s) 255
BstV1I GCAGC 4 cut(s) 61, 72, 124, 309
BstZI CGGCCG 1 cut(s) 121
Bsu36I CCTNAGG 1 cut(s) 65
BsuRI GGCC 5 cut(s) 74, 92, 110, 123, 227
BtgI CCRYGG 4 cut(s) 21, 43, 115, 132
BtsCI GGATG 1 cut(s) 39
BtsIMutI CAGTG 1 cut(s) 420
Cac8I GCNNGC 1 cut(s) 295
CfoI GCGC 2 cut(s) 257, 278
Cfr10I RCCGGY 2 cut(s) 227, 257
Cfr13I GGNCC 2 cut(s) 73, 91
CseI GACGC 2 cut(s) 221, 289
Csp6I GTAC 1 cut(s) 244
CviAII CATG 3 cut(s) 22, 55, 133
CviQI GTAC 1 cut(s) 244
DdeI CTNAG 1 cut(s) 65
DpnI GATC 1 cut(s) 306
DpnII GATC 1 cut(s) 304
EaeI YGGCCR 1 cut(s) 121
EagI CGGCCG 1 cut(s) 121
Eam1104I CTCTTC 2 cut(s) 274, 405
EarI CTCTTC 2 cut(s) 274, 405
Ecl136II GAGCTC 1 cut(s) 418
EclXI CGGCCG 1 cut(s) 121
Eco130I CCWWGG 2 cut(s) 21, 132
Eco24I GRGCYC 1 cut(s) 420
Eco52I CGGCCG 1 cut(s) 121
Eco53kI GAGCTC 1 cut(s) 418
Eco57I CTGAAG 1 cut(s) 186
Eco81I CCTNAGG 1 cut(s) 65
EcoICRI GAGCTC 1 cut(s) 418
EcoO109I RGGNCCY 1 cut(s) 91
EcoT14I CCWWGG 2 cut(s) 21, 132
EcoT38I GRGCYC 1 cut(s) 420
ErhI CCWWGG 2 cut(s) 21, 132
FaeI CATG 3 cut(s) 25, 58, 136
FaiI YATR 4 cut(s) 23, 56, 134, 142
FatI CATG 3 cut(s) 21, 54, 132
FblI GTMKAC 1 cut(s) 201
Fnu4HI GCNGC 8 cut(s) 6, 50, 61, 121, 138, 216, 253, 298
FokI GGATG 1 cut(s) 26
FriOI GRGCYC 1 cut(s) 420
Fsp4HI GCNGC 8 cut(s) 6, 50, 61, 121, 138, 216, 253, 298
GlaI GCGC 2 cut(s) 256, 277
GluI GCNGC 8 cut(s) 6, 50, 61, 121, 138, 216, 253, 298
HaeIII GGCC 5 cut(s) 74, 92, 110, 123, 227
HapII CCGG 4 cut(s) 15, 228, 258, 279
HgaI GACGC 2 cut(s) 221, 289
HhaI GCGC 2 cut(s) 257, 278
Hin1I GRCGYC 1 cut(s) 213
Hin1II CATG 3 cut(s) 25, 58, 136
Hin6I GCGC 2 cut(s) 255, 276
HinP1I GCGC 2 cut(s) 255, 276
HpaII CCGG 4 cut(s) 15, 228, 258, 279
HphI GGTGA 1 cut(s) 352
Hpy166II GTNNAC 1 cut(s) 202
Hpy188I TCNGA 3 cut(s) 178, 313, 385
Hpy188III TCNNGA 3 cut(s) 157, 209, 233
Hpy8I GTNNAC 1 cut(s) 202
Hpy99I CGWCG 2 cut(s) 215, 305
HpyAV CCTTC 4 cut(s) 46, 100, 161, 387
HpyCH4III ACNGT 2 cut(s) 116, 347
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 1 cut(s) 140
HpyF10VI GCNNNNNNNGC 3 cut(s) 137, 224, 273
HpyF3I CTNAG 1 cut(s) 65
HpySE526I ACGT 1 cut(s) 81
Hsp92I GRCGYC 1 cut(s) 213
Hsp92II CATG 3 cut(s) 25, 58, 136
HspAI GCGC 2 cut(s) 255, 276
Kzo9I GATC 1 cut(s) 304
LguI GCTCTTC 1 cut(s) 274
LmnI GCTCC 1 cut(s) 415
Lsp1109I GCAGC 4 cut(s) 61, 72, 124, 309
MaeII ACGT 1 cut(s) 81
MaeIII GTNAC 2 cut(s) 148, 388
MalI GATC 1 cut(s) 306
MboI GATC 1 cut(s) 304
MboII GAAGA 2 cut(s) 261, 422
MhlI GDGCHC 2 cut(s) 191, 420
MnlI CCTC 8 cut(s) 43, 74, 214, 217, 248, 368, 391, 406
MseI TTAA 1 cut(s) 427
MspI CCGG 4 cut(s) 15, 228, 258, 279
MvnI CGCG 1 cut(s) 255
MwoI GCNNNNNNNGC 3 cut(s) 137, 224, 273
NcoI CCATGG 2 cut(s) 21, 132
NdeII GATC 1 cut(s) 304
NlaIII CATG 3 cut(s) 25, 58, 136
NlaIV GGNNCC 2 cut(s) 19, 75
NmeAIII GCCGAG 1 cut(s) 244
NmuCI GTSAC 1 cut(s) 148
PciSI GCTCTTC 1 cut(s) 274
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PkrI GCNGC 8 cut(s) 7, 51, 62, 122, 139, 217, 254, 299
Psp124BI GAGCTC 1 cut(s) 420
PspN4I GGNNCC 2 cut(s) 19, 75
PspPI GGNCC 2 cut(s) 73, 91
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
SacI GAGCTC 1 cut(s) 420
SapI GCTCTTC 1 cut(s) 274
SaqAI TTAA 1 cut(s) 427
SatI GCNGC 8 cut(s) 6, 50, 61, 121, 138, 216, 253, 298
Sau3AI GATC 1 cut(s) 304
Sau96I GGNCC 2 cut(s) 73, 91
SduI GDGCHC 2 cut(s) 191, 420
SetI ASST 8 cut(s) 35, 71, 84, 150, 240, 288, 365, 420
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
SsiI CCGC 4 cut(s) 5, 120, 216, 253
SstI GAGCTC 1 cut(s) 420
StyI CCWWGG 2 cut(s) 21, 132
TaaI ACNGT 2 cut(s) 116, 347
TaiI ACGT 1 cut(s) 84
TaqI TCGA 4 cut(s) 183, 210, 303, 396
TauI GCSGC 4 cut(s) 8, 123, 218, 255
Tru1I TTAA 1 cut(s) 427
Tru9I TTAA 1 cut(s) 427
TscAI CASTG 1 cut(s) 427
TseFI GTSAC 1 cut(s) 148
TseI GCWGC 4 cut(s) 49, 60, 137, 297
Tsp45I GTSAC 1 cut(s) 148
TspDTI ATGAA 1 cut(s) 28
TspGWI ACGGA 1 cut(s) 32
TspRI CASTG 1 cut(s) 427
XcmI CCANNNNNNNNNTGG 1 cut(s) 344
XmiI GTMKAC 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.