Prupe.1G573600_v2.0.a1

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0012317
Physical Location & Seq
Forward (+)
46743148 .. 46744389
1242 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G573600.1

Sequence Viewer

Length: 429 bp
ATGGCAGCTCTCTCTGGCACCATGGTGAGCACCTCCTTCATCCGCGGCCAGCCGATGACCAGCCTACGGTTAGCCCCCAACATGGGCCAGGCTCTTTTCGGGTTGAAGGCCAACCGTGGAGGGCGTGTGACAATGGCTGCTTTCAAGGTGAAGCTGCTGACACCAGATGGGCCCCAAGAGTTTGAGTGCCCGGATGATGTTTACATTCTTGACGCTGCGGAGGAGGCCGGTATCGACCTACCCTACTCTTGCAGGGCTGGTTCTTGCTCTTCATGTGCTGGCAAAGTTGTGGAAGGGGGTGTAGACCAGTCAGATCAGAGCTTCCTTGATGATGAACAGATTGATGGTGGATTTGTCCTTACTTGTGTGGCTTATCCTTCATCTGATGTTGTGCTTGAGACCCACAAAGAAGAGGAGCTCACTGGTTAA

Protein Analysis

143

Amino Acids

15.0

Weight (kDa)

4.3

Isoelectric Point (pI)

44.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10960 AT1G60950
fragaria_vesca FvH4_5g28820
malus_domestica MD08G1236800.v1.1 MD15G1428700.v1.1
prunus_persica Prupe.1G573600_v2.0.a1
pyrus_communis pycom08g20500
rosa_chinensis RchiOBHm_Chr7g0221031
rosa_laevigata RLG00000002182
rosa_multiflora Rmu_co8393539.1_g000001 Rmu_sc0002105.1_g000004 Rmu_sc0012763.1_g000009
rosa_roxburghii Rroxscaffold_3G00238810
rosa_rugosa Rorug07G0200100
rosa_samantha Rh7AG339400 Rh7BG330400 Rh7CG357400 Rh7DG338100
rosa_wichuraiana Rw7G028870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 17
AccI GTMKAC 1 cut(s) 303
AccII CGCG 1 cut(s) 45
AciI CCGC 3 cut(s) 43, 45, 218
AcoI YGGCCR 1 cut(s) 46
AfiI CCNNNNNNNGG 3 cut(s) 66, 82, 83
AgsI TTSAA 2 cut(s) 106, 145
AjnI CCWGG 1 cut(s) 87
AleI CACNNNNGTG 1 cut(s) 23
AluBI AGCT 4 cut(s) 8, 154, 321, 418
AluI AGCT 4 cut(s) 8, 154, 321, 418
Alw21I GWGCWC 2 cut(s) 32, 420
Alw26I GTCTC 1 cut(s) 392
AoxI GGCC 5 cut(s) 46, 85, 108, 170, 225
ApaI GGGCCC 1 cut(s) 174
ApeKI GCWGC 4 cut(s) 5, 137, 154, 215
AspS9I GGNCC 3 cut(s) 85, 170, 171
AsuC2I CCSGG 1 cut(s) 191
AsuHPI GGTGA 2 cut(s) 37, 160
BaeGI GKGCMC 2 cut(s) 174, 191
BanI GGYRCC 1 cut(s) 17
BanII GRGCYC 2 cut(s) 174, 420
Bbv12I GWGCWC 2 cut(s) 32, 420
BbvI GCAGC 4 cut(s) 17, 124, 141, 202
BccI CCATC 2 cut(s) 161, 338
BciT130I CCWGG 1 cut(s) 89
BcnI CCSGG 1 cut(s) 191
BcoDI GTCTC 1 cut(s) 392
BisI GCNGC 5 cut(s) 6, 46, 138, 155, 216
BlsI GCNGC 5 cut(s) 7, 47, 139, 156, 217
Bme1390I CCNGG 2 cut(s) 89, 191
BmgT120I GGNCC 3 cut(s) 85, 170, 171
BmiI GGNNCC 3 cut(s) 19, 172, 173
BmrFI CCNGG 2 cut(s) 89, 191
BpuEI CTTGAG 1 cut(s) 416
BpuMI CCSGG 1 cut(s) 191
BsaI GGTCTC 1 cut(s) 392
BsaJI CCNNGG 3 cut(s) 21, 43, 115
BsaXI ACNNNNNCTCC 2 cut(s) 111, 141
Bsc4I CCNNNNNNNGG 3 cut(s) 66, 82, 83
Bse118I RCCGGY 1 cut(s) 227
Bse1I ACTGG 2 cut(s) 307, 427
BseBI CCWGG 1 cut(s) 89
BseDI CCNNGG 3 cut(s) 21, 43, 115
BseGI GGATG 2 cut(s) 39, 199
BseLI CCNNNNNNNGG 3 cut(s) 66, 82, 83
BseNI ACTGG 2 cut(s) 307, 427
BseRI GAGGAG 2 cut(s) 236, 428
BseSI GKGCMC 2 cut(s) 174, 191
BseXI GCAGC 4 cut(s) 17, 124, 141, 202
Bsh1236I CGCG 1 cut(s) 45
BshFI GGCC 5 cut(s) 48, 87, 110, 172, 227
BshNI GGYRCC 1 cut(s) 17
BsiHKAI GWGCWC 2 cut(s) 32, 420
BsiSI CCGG 2 cut(s) 191, 228
BslI CCNNNNNNNGG 3 cut(s) 66, 82, 83
BsmAI GTCTC 1 cut(s) 392
BsnI GGCC 5 cut(s) 48, 87, 110, 172, 227
Bso31I GGTCTC 1 cut(s) 392
Bsp120I GGGCCC 1 cut(s) 170
Bsp1286I GDGCHC 4 cut(s) 32, 174, 191, 420
Bsp143I GATC 1 cut(s) 313
Bsp19I CCATGG 1 cut(s) 21
BspACI CCGC 3 cut(s) 43, 45, 218
BspANI GGCC 5 cut(s) 48, 87, 110, 172, 227
BspFNI CGCG 1 cut(s) 45
BspLI GGNNCC 3 cut(s) 19, 172, 173
BspQI GCTCTTC 1 cut(s) 274
BspT107I GGYRCC 1 cut(s) 17
BspTNI GGTCTC 1 cut(s) 392
BsrFI RCCGGY 1 cut(s) 227
BsrI ACTGG 2 cut(s) 307, 427
BssAI RCCGGY 1 cut(s) 227
BssECI CCNNGG 3 cut(s) 21, 43, 115
BssMI GATC 1 cut(s) 313
BssT1I CCWWGG 1 cut(s) 21
Bst2UI CCWGG 1 cut(s) 89
Bst4CI ACNGT 2 cut(s) 69, 116
Bst6I CTCTTC 2 cut(s) 274, 405
BstC8I GCNNGC 2 cut(s) 50, 280
BstDSI CCRYGG 3 cut(s) 21, 43, 115
BstF5I GGATG 2 cut(s) 39, 199
BstFNI CGCG 1 cut(s) 45
BstKTI GATC 1 cut(s) 316
BstMAI GTCTC 1 cut(s) 392
BstMBI GATC 1 cut(s) 313
BstMWI GCNNNNNNNGC 1 cut(s) 224
BstNI CCWGG 1 cut(s) 89
BstSCI CCNGG 2 cut(s) 87, 189
BstSLI GKGCMC 2 cut(s) 174, 191
BstUI CGCG 1 cut(s) 45
BstV1I GCAGC 4 cut(s) 17, 124, 141, 202
BsuRI GGCC 5 cut(s) 48, 87, 110, 172, 227
BtgI CCRYGG 3 cut(s) 21, 43, 115
BtsCI GGATG 2 cut(s) 39, 199
BtsIMutI CAGTG 1 cut(s) 420
Cac8I GCNNGC 2 cut(s) 50, 280
Cfr10I RCCGGY 1 cut(s) 227
Cfr13I GGNCC 3 cut(s) 85, 170, 171
Cfr42I CCGCGG 1 cut(s) 46
CseI GACGC 1 cut(s) 221
CviAII CATG 3 cut(s) 22, 82, 273
DpnI GATC 1 cut(s) 315
DpnII GATC 1 cut(s) 313
EaeI YGGCCR 1 cut(s) 46
Eam1104I CTCTTC 2 cut(s) 274, 405
EarI CTCTTC 2 cut(s) 274, 405
Ecl136II GAGCTC 1 cut(s) 418
Eco130I CCWWGG 1 cut(s) 21
Eco24I GRGCYC 2 cut(s) 174, 420
Eco31I GGTCTC 1 cut(s) 392
Eco53kI GAGCTC 1 cut(s) 418
EcoICRI GAGCTC 1 cut(s) 418
EcoO109I RGGNCCY 1 cut(s) 171
EcoRII CCWGG 1 cut(s) 87
EcoT14I CCWWGG 1 cut(s) 21
EcoT38I GRGCYC 2 cut(s) 174, 420
ErhI CCWWGG 1 cut(s) 21
FaeI CATG 3 cut(s) 25, 85, 276
FaiI YATR 3 cut(s) 23, 83, 274
FatI CATG 3 cut(s) 21, 81, 272
FblI GTMKAC 1 cut(s) 303
Fnu4HI GCNGC 5 cut(s) 6, 46, 138, 155, 216
FokI GGATG 2 cut(s) 26, 206
FriOI GRGCYC 2 cut(s) 174, 420
Fsp4HI GCNGC 5 cut(s) 6, 46, 138, 155, 216
GluI GCNGC 5 cut(s) 6, 46, 138, 155, 216
HaeIII GGCC 5 cut(s) 48, 87, 110, 172, 227
HapII CCGG 2 cut(s) 191, 228
HgaI GACGC 1 cut(s) 221
Hin1II CATG 3 cut(s) 25, 85, 276
HpaII CCGG 2 cut(s) 191, 228
HphI GGTGA 2 cut(s) 37, 160
Hpy166II GTNNAC 2 cut(s) 202, 304
Hpy188I TCNGA 3 cut(s) 313, 318, 385
Hpy188III TCNNGA 1 cut(s) 209
Hpy8I GTNNAC 2 cut(s) 202, 304
HpyAV CCTTC 4 cut(s) 46, 100, 287, 387
HpyCH4III ACNGT 2 cut(s) 69, 116
HpyCH4V TGCA 1 cut(s) 252
HpyF10VI GCNNNNNNNGC 1 cut(s) 224
Hsp92II CATG 3 cut(s) 25, 85, 276
KspI CCGCGG 1 cut(s) 46
Kzo9I GATC 1 cut(s) 313
LguI GCTCTTC 1 cut(s) 274
LmnI GCTCC 1 cut(s) 415
Lsp1109I GCAGC 4 cut(s) 17, 124, 141, 202
MaeIII GTNAC 1 cut(s) 127
MalI GATC 1 cut(s) 315
MboI GATC 1 cut(s) 313
MboII GAAGA 2 cut(s) 261, 422
MhlI GDGCHC 4 cut(s) 32, 174, 191, 420
MnlI CCTC 5 cut(s) 43, 113, 214, 217, 406
MseI TTAA 1 cut(s) 427
MslI CAYNNNNRTG 1 cut(s) 23
MspA1I CMGCKG 1 cut(s) 45
MspI CCGG 2 cut(s) 191, 228
MspR9I CCNGG 2 cut(s) 89, 191
MvaI CCWGG 1 cut(s) 89
MvnI CGCG 1 cut(s) 45
MwoI GCNNNNNNNGC 1 cut(s) 224
NciI CCSGG 1 cut(s) 191
NcoI CCATGG 1 cut(s) 21
NdeII GATC 1 cut(s) 313
NlaIII CATG 3 cut(s) 25, 85, 276
NlaIV GGNNCC 3 cut(s) 19, 172, 173
NmuCI GTSAC 1 cut(s) 127
OliI CACNNNNGTG 1 cut(s) 23
PciSI GCTCTTC 1 cut(s) 274
PkrI GCNGC 5 cut(s) 7, 47, 139, 156, 217
Psp124BI GAGCTC 1 cut(s) 420
Psp6I CCWGG 1 cut(s) 87
PspGI CCWGG 1 cut(s) 87
PspN4I GGNNCC 3 cut(s) 19, 172, 173
PspOMI GGGCCC 1 cut(s) 170
PspPI GGNCC 3 cut(s) 85, 170, 171
RseI CAYNNNNRTG 1 cut(s) 23
SacI GAGCTC 1 cut(s) 420
SacII CCGCGG 1 cut(s) 46
SapI GCTCTTC 1 cut(s) 274
SaqAI TTAA 1 cut(s) 427
SatI GCNGC 5 cut(s) 6, 46, 138, 155, 216
Sau3AI GATC 1 cut(s) 313
Sau96I GGNCC 3 cut(s) 85, 170, 171
ScrFI CCNGG 2 cut(s) 89, 191
SduI GDGCHC 4 cut(s) 32, 174, 191, 420
SetI ASST 7 cut(s) 10, 35, 150, 156, 240, 323, 420
Sfr303I CCGCGG 1 cut(s) 46
SgrBI CCGCGG 1 cut(s) 46
SmiMI CAYNNNNRTG 1 cut(s) 23
SmlI CTYRAG 1 cut(s) 395
SmoI CTYRAG 1 cut(s) 395
SsiI CCGC 3 cut(s) 43, 45, 218
SstI GAGCTC 1 cut(s) 420
StyD4I CCNGG 2 cut(s) 87, 189
StyI CCWWGG 1 cut(s) 21
TaaI ACNGT 2 cut(s) 69, 116
TaqI TCGA 1 cut(s) 234
TauI GCSGC 1 cut(s) 48
Tru1I TTAA 1 cut(s) 427
Tru9I TTAA 1 cut(s) 427
TscAI CASTG 1 cut(s) 427
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 4 cut(s) 5, 137, 154, 215
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 4 cut(s) 28, 261, 348, 369
TspRI CASTG 1 cut(s) 427
XmiI GTMKAC 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.