AT1G60950

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012317
Physical Location & Seq
Forward (+)
22444307 .. 22445291
985 bp
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UTR
Exon/CDS
Intron
AT1G60950.1

Sequence Viewer

Length: 447 bp
ATGGCTTCCACTGCTCTCTCAAGCGCCATCGTCGGAACTTCATTCATCCGTCGTTCCCCAGCTCCAATCAGTCTCCGTTCCCTTCCATCAGCCAACACACAATCCCTCTTCGGTCTCAAATCAGGCACCGCTCGTGGTGGACGTGTCACAGCCATGGCTACATACAAGGTCAAGTTCATCACACCAGAAGGTGAGCTAGAGGTTGAGTGTGACGACGACGTCTACGTTCTTGATGCTGCTGAGGAAGCTGGAATCGATTTGCCTTACTCTTGCCGTGCTGGTTCTTGTTCGAGCTGTGCTGGTAAAGTTGTGTCTGGATCTGTTGATCAGTCTGACCAGAGTTTCCTTGATGATGAACAGATTGGTGAAGGGTTTGTTCTCACTTGTGCTGCTTACCCTACCTCTGATGTTACCATTGAAACCCACAAAGAAGAAGACATTGTTTAA

Protein Analysis

148

Amino Acids

15.54

Weight (kDa)

4.34

Isoelectric Point (pI)

57.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fer2 PF00111 61 - 134 3.1e-24 2Fe-2S iron-sulfur cluster binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10960 AT1G60950
fragaria_vesca FvH4_5g28820
malus_domestica MD08G1236800.v1.1 MD15G1428700.v1.1
prunus_persica Prupe.1G573600_v2.0.a1
pyrus_communis pycom08g20500
rosa_chinensis RchiOBHm_Chr7g0221031
rosa_laevigata RLG00000002182
rosa_multiflora Rmu_co8393539.1_g000001 Rmu_sc0002105.1_g000004 Rmu_sc0012763.1_g000009
rosa_roxburghii Rroxscaffold_3G00238810
rosa_rugosa Rorug07G0200100
rosa_samantha Rh7AG339400 Rh7BG330400 Rh7CG357400 Rh7DG338100
rosa_wichuraiana Rw7G028870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 218
AatII GACGTC 1 cut(s) 222
AccB1I GGYRCC 1 cut(s) 125
AccBSI CCGCTC 1 cut(s) 131
AccI GTMKAC 1 cut(s) 222
AciI CCGC 1 cut(s) 129
AclWI GGATC 1 cut(s) 325
AcyI GRCGYC 1 cut(s) 219
AflIII ACRYGT 1 cut(s) 142
AgsI TTSAA 1 cut(s) 419
AjiI CACGTC 1 cut(s) 143
AluBI AGCT 4 cut(s) 62, 196, 248, 294
AluI AGCT 4 cut(s) 62, 196, 248, 294
Alw26I GTCTC 2 cut(s) 77, 119
AlwI GGATC 1 cut(s) 325
ApeKI GCWGC 2 cut(s) 236, 389
AspLEI GCGC 1 cut(s) 26
AsuHPI GGTGA 2 cut(s) 203, 377
BanI GGYRCC 1 cut(s) 125
BauI CACGAG 1 cut(s) 132
BbsI GAAGAC 1 cut(s) 441
BbvCI CCTCAGC 1 cut(s) 240
BbvI GCAGC 2 cut(s) 223, 376
BccI CCATC 2 cut(s) 35, 94
BceAI ACGGC 1 cut(s) 258
BclI TGATCA 1 cut(s) 325
BcoDI GTCTC 2 cut(s) 77, 119
BfaI CTAG 1 cut(s) 197
BfoI RGCGCY 1 cut(s) 27
BisI GCNGC 2 cut(s) 237, 390
BlsI GCNGC 2 cut(s) 238, 391
BmgBI CACGTC 1 cut(s) 143
BmiI GGNNCC 1 cut(s) 127
BmsI GCATC 1 cut(s) 223
BpiI GAAGAC 1 cut(s) 441
Bpu10I CCTNAGC 1 cut(s) 240
BpuEI CTTGAG 1 cut(s) 4
Bsa29I ATCGAT 1 cut(s) 255
BsaHI GRCGYC 1 cut(s) 219
BsaI GGTCTC 1 cut(s) 119
BsaJI CCNNGG 1 cut(s) 153
BseCI ATCGAT 1 cut(s) 255
BseDI CCNNGG 1 cut(s) 153
BseGI GGATG 1 cut(s) 45
BseMII CTCAG 1 cut(s) 231
BseXI GCAGC 2 cut(s) 223, 376
BseYI CCCAGC 1 cut(s) 58
BshNI GGYRCC 1 cut(s) 125
BshVI ATCGAT 1 cut(s) 255
BsmAI GTCTC 2 cut(s) 77, 119
Bso31I GGTCTC 1 cut(s) 119
Bsp143I GATC 2 cut(s) 317, 325
Bsp19I CCATGG 1 cut(s) 153
BspACI CCGC 1 cut(s) 129
BspCNI CTCAG 1 cut(s) 232
BspDI ATCGAT 1 cut(s) 255
BspLI GGNNCC 1 cut(s) 127
BspPI GGATC 1 cut(s) 325
BspT107I GGYRCC 1 cut(s) 125
BspTNI GGTCTC 1 cut(s) 119
BsrBI CCGCTC 1 cut(s) 131
BssECI CCNNGG 1 cut(s) 153
BssMI GATC 2 cut(s) 317, 325
BssNI GRCGYC 1 cut(s) 219
BssSI CACGAG 1 cut(s) 132
BssT1I CCWWGG 1 cut(s) 153
Bst2BI CACGAG 1 cut(s) 132
Bst6I CTCTTC 1 cut(s) 113
BstACI GRCGYC 1 cut(s) 219
BstDEI CTNAG 1 cut(s) 240
BstDSI CCRYGG 1 cut(s) 153
BstF5I GGATG 1 cut(s) 45
BstH2I RGCGCY 1 cut(s) 27
BstHHI GCGC 1 cut(s) 26
BstKTI GATC 2 cut(s) 320, 328
BstMAI GTCTC 2 cut(s) 77, 119
BstMBI GATC 2 cut(s) 317, 325
BstMWI GCNNNNNNNGC 2 cut(s) 11, 245
BstV1I GCAGC 2 cut(s) 223, 376
BstV2I GAAGAC 1 cut(s) 441
BstX2I RGATCY 1 cut(s) 317
BstYI RGATCY 1 cut(s) 317
Bsu15I ATCGAT 1 cut(s) 255
BsuTUI ATCGAT 1 cut(s) 255
BtgI CCRYGG 1 cut(s) 153
BtrI CACGTC 1 cut(s) 143
BtsCI GGATG 1 cut(s) 45
BtsI GCAGTG 1 cut(s) 9
BtsIMutI CAGTG 1 cut(s) 9
CfoI GCGC 1 cut(s) 26
ClaI ATCGAT 1 cut(s) 255
CviAII CATG 1 cut(s) 154
CviJI RGCY 8 cut(s) 5, 62, 92, 152, 158, 196, 248, 294
CviKI_1 RGCY 8 cut(s) 5, 62, 92, 152, 158, 196, 248, 294
DdeI CTNAG 1 cut(s) 240
DpnI GATC 2 cut(s) 319, 327
DpnII GATC 2 cut(s) 317, 325
DrdI GACNNNNNNGTC 1 cut(s) 218
DseDI GACNNNNNNGTC 1 cut(s) 218
Eam1104I CTCTTC 1 cut(s) 113
EarI CTCTTC 1 cut(s) 113
Eco130I CCWWGG 1 cut(s) 153
Eco31I GGTCTC 1 cut(s) 119
EcoT14I CCWWGG 1 cut(s) 153
ErhI CCWWGG 1 cut(s) 153
FaeI CATG 1 cut(s) 157
FaiI YATR 2 cut(s) 155, 163
FatI CATG 1 cut(s) 153
FbaI TGATCA 1 cut(s) 325
FblI GTMKAC 1 cut(s) 222
Fnu4HI GCNGC 2 cut(s) 237, 390
FokI GGATG 1 cut(s) 32
Fsp4HI GCNGC 2 cut(s) 237, 390
FspBI CTAG 1 cut(s) 197
GlaI GCGC 1 cut(s) 25
GluI GCNGC 2 cut(s) 237, 390
GsaI CCCAGC 1 cut(s) 62
HaeII RGCGCY 1 cut(s) 27
HhaI GCGC 1 cut(s) 26
Hin1I GRCGYC 1 cut(s) 219
Hin1II CATG 1 cut(s) 157
Hin6I GCGC 1 cut(s) 24
HinP1I GCGC 1 cut(s) 24
HinfI GANTC 1 cut(s) 252
HphI GGTGA 2 cut(s) 203, 377
Hpy166II GTNNAC 2 cut(s) 140, 223
Hpy188I TCNGA 3 cut(s) 35, 334, 406
Hpy188III TCNNGA 2 cut(s) 230, 315
Hpy8I GTNNAC 2 cut(s) 140, 223
Hpy99I CGWCG 4 cut(s) 35, 54, 218, 221
HpyAV CCTTC 3 cut(s) 92, 182, 362
HpyCH4IV ACGT 3 cut(s) 142, 219, 225
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 245
HpyF3I CTNAG 1 cut(s) 240
HpySE526I ACGT 3 cut(s) 142, 219, 225
Hsp92I GRCGYC 1 cut(s) 219
Hsp92II CATG 1 cut(s) 157
HspAI GCGC 1 cut(s) 24
Ksp22I TGATCA 1 cut(s) 325
Kzo9I GATC 2 cut(s) 317, 325
LmnI GCTCC 1 cut(s) 67
LpnPI CCDG 8 cut(s) 72, 108, 198, 234, 264, 285, 300, 350
Lsp1109I GCAGC 2 cut(s) 223, 376
LweI GCATC 1 cut(s) 223
MaeI CTAG 1 cut(s) 197
MaeII ACGT 3 cut(s) 142, 219, 225
MaeIII GTNAC 3 cut(s) 145, 209, 409
MalI GATC 2 cut(s) 319, 327
MbiI CCGCTC 1 cut(s) 131
MboI GATC 2 cut(s) 317, 325
MboII GAAGA 3 cut(s) 100, 443, 446
MflI RGATCY 1 cut(s) 317
MmeI TCCRAC 1 cut(s) 13
MnlI CCTC 4 cut(s) 116, 193, 235, 412
MseI TTAA 1 cut(s) 445
MslI CAYNNNNRTG 1 cut(s) 152
MwoI GCNNNNNNNGC 2 cut(s) 11, 245
NcoI CCATGG 1 cut(s) 153
NdeII GATC 2 cut(s) 317, 325
NlaIII CATG 1 cut(s) 157
NlaIV GGNNCC 1 cut(s) 127
NmuCI GTSAC 2 cut(s) 145, 209
PcsI WCGNNNNNNNCGW 2 cut(s) 139, 222
PfeI GAWTC 1 cut(s) 252
PflFI GACNNNGTC 1 cut(s) 218
PkrI GCNGC 2 cut(s) 238, 391
PspFI CCCAGC 1 cut(s) 58
PspN4I GGNNCC 1 cut(s) 127
PsuI RGATCY 1 cut(s) 317
PsyI GACNNNGTC 1 cut(s) 218
RseI CAYNNNNRTG 1 cut(s) 152
SaqAI TTAA 1 cut(s) 445
SatI GCNGC 2 cut(s) 237, 390
Sau3AI GATC 2 cut(s) 317, 325
SfaNI GCATC 1 cut(s) 223
SmiMI CAYNNNNRTG 1 cut(s) 152
SmlI CTYRAG 1 cut(s) 19
SmoI CTYRAG 1 cut(s) 19
SsiI CCGC 1 cut(s) 129
SspMI CTAG 1 cut(s) 197
StyI CCWWGG 1 cut(s) 153
TaiI ACGT 3 cut(s) 145, 222, 228
TaqI TCGA 2 cut(s) 255, 290
TaqII GACCGA 1 cut(s) 101
TfiI GAWTC 1 cut(s) 252
Tru1I TTAA 1 cut(s) 445
Tru9I TTAA 1 cut(s) 445
TscAI CASTG 1 cut(s) 16
TseFI GTSAC 2 cut(s) 145, 209
TseI GCWGC 2 cut(s) 236, 389
Tsp45I GTSAC 2 cut(s) 145, 209
TspDTI ATGAA 4 cut(s) 30, 34, 166, 369
TspGWI ACGGA 2 cut(s) 38, 65
TspRI CASTG 1 cut(s) 16
Tth111I GACNNNGTC 1 cut(s) 218
XmiI GTMKAC 1 cut(s) 222
XspI CTAG 1 cut(s) 197
ZraI GACGTC 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.