MD15G1428700.v1.1

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0012317
Physical Location & Seq
Forward (+)
52935028 .. 52935462
435 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1428700.v1.1.491

Sequence Viewer

Length: 435 bp
ATGGCAGCCACAGCTCTCTCAGGCACCATGGTCAGCACCTCCTTCATCCGCGGCCAGCCGATGACCAGCCTGCGGTTATCCCCCAACGTCGGTCAGGCCCTTTTCGGGCTCAAGGCCAACCGCGGAGGGCGTGTGGCGATGGCTGCCTACAAGGTGAAGCTGCTCACACCAGAAGGGCCACAAGAGTTTGAGTGCCCCGACGACGTGTACATTCTCGACGCGGCGGAGGAGGCCGGGATTGACCTTCCCTACTCATGCAGGGCAGGGTCTTGCTCCTCGTGCGCCGGCAAAGTTGTGAGTGGGGGTGTGGATCAGTCGGACCAGAGCTTTTTGGATGATGAGCAGATGGACGGTGGATTTGTGCTCACTTGTGTGGCTTATCCGTCGTCTGACGTCACACTTGAGACCCACAAGGAAGAGGAGCTTACTGGTTAA

Protein Analysis

145

Amino Acids

15.14

Weight (kDa)

4.35

Isoelectric Point (pI)

47.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fer2 PF00111 60 - 128 3.2e-24 2Fe-2S iron-sulfur cluster binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10960 AT1G60950
fragaria_vesca FvH4_5g28820
malus_domestica MD08G1236800.v1.1 MD15G1428700.v1.1
prunus_persica Prupe.1G573600_v2.0.a1
pyrus_communis pycom08g20500
rosa_chinensis RchiOBHm_Chr7g0221031
rosa_laevigata RLG00000002182
rosa_multiflora Rmu_co8393539.1_g000001 Rmu_sc0002105.1_g000004 Rmu_sc0012763.1_g000009
rosa_roxburghii Rroxscaffold_3G00238810
rosa_rugosa Rorug07G0200100
rosa_samantha Rh7AG339400 Rh7BG330400 Rh7CG357400 Rh7DG338100
rosa_wichuraiana Rw7G028870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 396
AccB1I GGYRCC 1 cut(s) 23
AccII CGCG 3 cut(s) 51, 123, 221
AciI CCGC 7 cut(s) 49, 51, 73, 121, 123, 221, 224
AclWI GGATC 1 cut(s) 318
AcoI YGGCCR 1 cut(s) 52
AcyI GRCGYC 1 cut(s) 393
AfaI GTAC 1 cut(s) 209
AfiI CCNNNNNNNGG 3 cut(s) 72, 89, 105
AflIII ACRYGT 1 cut(s) 204
AjiI CACGTC 1 cut(s) 205
AleI CACNNNNGTG 1 cut(s) 371
AluBI AGCT 4 cut(s) 14, 160, 327, 424
AluI AGCT 4 cut(s) 14, 160, 327, 424
Alw21I GWGCWC 1 cut(s) 366
Alw26I GTCTC 1 cut(s) 398
AlwI GGATC 1 cut(s) 318
AoxI GGCC 5 cut(s) 52, 96, 114, 176, 231
ApeKI GCWGC 3 cut(s) 5, 143, 160
ArsI GACNNNNNNTTYG 2 cut(s) 341, 373
AspLEI GCGC 1 cut(s) 284
AspS9I GGNCC 3 cut(s) 97, 176, 319
AsuC2I CCSGG 1 cut(s) 235
AsuHPI GGTGA 1 cut(s) 166
AvaII GGWCC 1 cut(s) 319
BaeGI GKGCMC 1 cut(s) 197
BanI GGYRCC 1 cut(s) 23
BanII GRGCYC 1 cut(s) 111
BauI CACGAG 1 cut(s) 277
Bbv12I GWGCWC 1 cut(s) 366
BbvI GCAGC 3 cut(s) 17, 130, 147
BccI CCATC 2 cut(s) 133, 340
BcnI CCSGG 1 cut(s) 235
BcoDI GTCTC 1 cut(s) 398
BisI GCNGC 5 cut(s) 6, 52, 144, 161, 222
BlsI GCNGC 5 cut(s) 7, 53, 145, 162, 223
Bme1390I CCNGG 1 cut(s) 235
Bme18I GGWCC 1 cut(s) 319
BmgBI CACGTC 1 cut(s) 205
BmgT120I GGNCC 3 cut(s) 97, 176, 319
BmiI GGNNCC 1 cut(s) 25
BmrFI CCNGG 1 cut(s) 235
BpuEI CTTGAG 2 cut(s) 95, 422
BpuMI CCSGG 1 cut(s) 235
BsaHI GRCGYC 1 cut(s) 393
BsaI GGTCTC 1 cut(s) 398
BsaJI CCNNGG 3 cut(s) 27, 49, 121
BsaXI ACNNNNNCTCC 2 cut(s) 117, 147
Bsc4I CCNNNNNNNGG 3 cut(s) 72, 89, 105
Bse118I RCCGGY 1 cut(s) 284
Bse1I ACTGG 1 cut(s) 433
BseDI CCNNGG 3 cut(s) 27, 49, 121
BseGI GGATG 2 cut(s) 45, 340
BseLI CCNNNNNNNGG 3 cut(s) 72, 89, 105
BseMII CTCAG 1 cut(s) 33
BseNI ACTGG 1 cut(s) 433
BseRI GAGGAG 3 cut(s) 242, 265, 434
BseSI GKGCMC 1 cut(s) 197
BseXI GCAGC 3 cut(s) 17, 130, 147
Bsh1236I CGCG 3 cut(s) 51, 123, 221
BshFI GGCC 5 cut(s) 54, 98, 116, 178, 233
BshNI GGYRCC 1 cut(s) 23
BsiHKAI GWGCWC 1 cut(s) 366
BsiSI CCGG 2 cut(s) 234, 285
BslI CCNNNNNNNGG 3 cut(s) 72, 89, 105
BsmAI GTCTC 1 cut(s) 398
BsnI GGCC 5 cut(s) 54, 98, 116, 178, 233
Bso31I GGTCTC 1 cut(s) 398
Bsp1286I GDGCHC 3 cut(s) 111, 197, 366
Bsp1407I TGTACA 1 cut(s) 207
Bsp143I GATC 1 cut(s) 310
Bsp19I CCATGG 1 cut(s) 27
BspACI CCGC 7 cut(s) 49, 51, 73, 121, 123, 221, 224
BspANI GGCC 5 cut(s) 54, 98, 116, 178, 233
BspCNI CTCAG 1 cut(s) 32
BspFNI CGCG 3 cut(s) 51, 123, 221
BspLI GGNNCC 1 cut(s) 25
BspPI GGATC 1 cut(s) 318
BspT107I GGYRCC 1 cut(s) 23
BspTNI GGTCTC 1 cut(s) 398
BsrFI RCCGGY 1 cut(s) 284
BsrGI TGTACA 1 cut(s) 207
BsrI ACTGG 1 cut(s) 433
BssAI RCCGGY 1 cut(s) 284
BssECI CCNNGG 3 cut(s) 27, 49, 121
BssMI GATC 1 cut(s) 310
BssNI GRCGYC 1 cut(s) 393
BssSI CACGAG 1 cut(s) 277
BssT1I CCWWGG 1 cut(s) 27
Bst2BI CACGAG 1 cut(s) 277
Bst4CI ACNGT 1 cut(s) 353
Bst6I CTCTTC 1 cut(s) 411
BstACI GRCGYC 1 cut(s) 393
BstAUI TGTACA 1 cut(s) 207
BstC8I GCNNGC 3 cut(s) 56, 71, 286
BstDEI CTNAG 1 cut(s) 19
BstDSI CCRYGG 3 cut(s) 27, 49, 121
BstF5I GGATG 2 cut(s) 45, 340
BstFNI CGCG 3 cut(s) 51, 123, 221
BstHHI GCGC 1 cut(s) 284
BstKTI GATC 1 cut(s) 313
BstMAI GTCTC 1 cut(s) 398
BstMBI GATC 1 cut(s) 310
BstMWI GCNNNNNNNGC 4 cut(s) 11, 143, 230, 279
BstSCI CCNGG 1 cut(s) 233
BstSLI GKGCMC 1 cut(s) 197
BstUI CGCG 3 cut(s) 51, 123, 221
BstV1I GCAGC 3 cut(s) 17, 130, 147
BsuRI GGCC 5 cut(s) 54, 98, 116, 178, 233
BtgI CCRYGG 3 cut(s) 27, 49, 121
BtgZI GCGATG 1 cut(s) 152
BtrI CACGTC 1 cut(s) 205
BtsCI GGATG 2 cut(s) 45, 340
Cac8I GCNNGC 3 cut(s) 56, 71, 286
CfoI GCGC 1 cut(s) 284
Cfr10I RCCGGY 1 cut(s) 284
Cfr13I GGNCC 3 cut(s) 97, 176, 319
Cfr42I CCGCGG 2 cut(s) 52, 124
CseI GACGC 1 cut(s) 227
Csp6I GTAC 1 cut(s) 208
CviAII CATG 2 cut(s) 28, 255
CviQI GTAC 1 cut(s) 208
DdeI CTNAG 1 cut(s) 19
DpnI GATC 1 cut(s) 312
DpnII GATC 1 cut(s) 310
EaeI YGGCCR 1 cut(s) 52
Eam1104I CTCTTC 1 cut(s) 411
EarI CTCTTC 1 cut(s) 411
EciI GGCGGA 1 cut(s) 239
Eco130I CCWWGG 1 cut(s) 27
Eco24I GRGCYC 1 cut(s) 111
Eco31I GGTCTC 1 cut(s) 398
Eco47I GGWCC 1 cut(s) 319
EcoO109I RGGNCCY 1 cut(s) 97
EcoT14I CCWWGG 1 cut(s) 27
EcoT38I GRGCYC 1 cut(s) 111
ErhI CCWWGG 1 cut(s) 27
FaeI CATG 2 cut(s) 31, 258
FaiI YATR 2 cut(s) 29, 256
FalI AAGNNNNNCTT 1 cut(s) 408
FatI CATG 2 cut(s) 27, 254
Fnu4HI GCNGC 5 cut(s) 6, 52, 144, 161, 222
FokI GGATG 2 cut(s) 32, 347
FriOI GRGCYC 1 cut(s) 111
Fsp4HI GCNGC 5 cut(s) 6, 52, 144, 161, 222
GlaI GCGC 1 cut(s) 283
GluI GCNGC 5 cut(s) 6, 52, 144, 161, 222
HaeIII GGCC 5 cut(s) 54, 98, 116, 178, 233
HapII CCGG 2 cut(s) 234, 285
HgaI GACGC 1 cut(s) 227
HhaI GCGC 1 cut(s) 284
Hin1I GRCGYC 1 cut(s) 393
Hin1II CATG 2 cut(s) 31, 258
Hin6I GCGC 1 cut(s) 282
HinP1I GCGC 1 cut(s) 282
HpaII CCGG 2 cut(s) 234, 285
HphI GGTGA 1 cut(s) 166
Hpy166II GTNNAC 1 cut(s) 208
Hpy188I TCNGA 2 cut(s) 319, 391
Hpy188III TCNNGA 1 cut(s) 215
Hpy8I GTNNAC 1 cut(s) 208
Hpy99I CGWCG 5 cut(s) 92, 203, 206, 221, 388
HpyAV CCTTC 3 cut(s) 52, 167, 254
HpyCH4III ACNGT 1 cut(s) 353
HpyCH4IV ACGT 3 cut(s) 87, 204, 393
HpyCH4V TGCA 1 cut(s) 258
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 143, 230, 279
HpyF3I CTNAG 1 cut(s) 19
HpySE526I ACGT 3 cut(s) 87, 204, 393
Hsp92I GRCGYC 1 cut(s) 393
Hsp92II CATG 2 cut(s) 31, 258
HspAI GCGC 1 cut(s) 282
KroI GCCGGC 1 cut(s) 284
KroNI GCCGGC 1 cut(s) 286
KspI CCGCGG 2 cut(s) 52, 124
Kzo9I GATC 1 cut(s) 310
LmnI GCTCC 2 cut(s) 278, 421
Lsp1109I GCAGC 3 cut(s) 17, 130, 147
MaeII ACGT 3 cut(s) 87, 204, 393
MaeIII GTNAC 1 cut(s) 394
MalI GATC 1 cut(s) 312
MboI GATC 1 cut(s) 310
MboII GAAGA 1 cut(s) 428
MhlI GDGCHC 3 cut(s) 111, 197, 366
MmeI TCCRAC 1 cut(s) 297
MnlI CCTC 6 cut(s) 49, 119, 220, 223, 286, 412
MroNI GCCGGC 1 cut(s) 284
MseI TTAA 1 cut(s) 433
MslI CAYNNNNRTG 1 cut(s) 371
MspA1I CMGCKG 2 cut(s) 51, 123
MspI CCGG 2 cut(s) 234, 285
MspR9I CCNGG 1 cut(s) 235
MvnI CGCG 3 cut(s) 51, 123, 221
MwoI GCNNNNNNNGC 4 cut(s) 11, 143, 230, 279
NaeI GCCGGC 1 cut(s) 286
NciI CCSGG 1 cut(s) 235
NcoI CCATGG 1 cut(s) 27
NdeII GATC 1 cut(s) 310
NgoMIV GCCGGC 1 cut(s) 284
NlaIII CATG 2 cut(s) 31, 258
NlaIV GGNNCC 1 cut(s) 25
NmuCI GTSAC 1 cut(s) 394
OliI CACNNNNGTG 1 cut(s) 371
PdiI GCCGGC 1 cut(s) 286
PkrI GCNGC 5 cut(s) 7, 53, 145, 162, 223
PspN4I GGNNCC 1 cut(s) 25
PspPI GGNCC 3 cut(s) 97, 176, 319
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
RseI CAYNNNNRTG 1 cut(s) 371
SacII CCGCGG 2 cut(s) 52, 124
SaqAI TTAA 1 cut(s) 433
SatI GCNGC 5 cut(s) 6, 52, 144, 161, 222
Sau3AI GATC 1 cut(s) 310
Sau96I GGNCC 3 cut(s) 97, 176, 319
ScrFI CCNGG 1 cut(s) 235
SduI GDGCHC 3 cut(s) 111, 197, 366
Sfr303I CCGCGG 2 cut(s) 52, 124
SgrBI CCGCGG 2 cut(s) 52, 124
SinI GGWCC 1 cut(s) 319
SmiMI CAYNNNNRTG 1 cut(s) 371
SmlI CTYRAG 2 cut(s) 110, 401
SmoI CTYRAG 2 cut(s) 110, 401
SsiI CCGC 7 cut(s) 49, 51, 73, 121, 123, 221, 224
StyD4I CCNGG 1 cut(s) 233
StyI CCWWGG 1 cut(s) 27
TaaI ACNGT 1 cut(s) 353
TaiI ACGT 3 cut(s) 90, 207, 396
TaqI TCGA 1 cut(s) 216
TaqII GACCGA 1 cut(s) 80
TatI WGTACW 1 cut(s) 207
TauI GCSGC 2 cut(s) 54, 224
Tru1I TTAA 1 cut(s) 433
Tru9I TTAA 1 cut(s) 433
TseFI GTSAC 1 cut(s) 394
TseI GCWGC 3 cut(s) 5, 143, 160
Tsp45I GTSAC 1 cut(s) 394
TspDTI ATGAA 1 cut(s) 34
TspGWI ACGGA 1 cut(s) 372
VpaK11BI GGWCC 1 cut(s) 319
ZraI GACGTC 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.