AT1G11040

DnaJ C terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015884
Physical Location & Seq
Reverse (-)
3678981 .. 3681032
2052 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G11040.1

Sequence Viewer

Length: 1317 bp
ATGGGGACTCCTCGTTCGCCGGCTACAGATTTCTTTGGAATTTCCAAGACAGCATGCAAAGCCTACAAGTCCCTCGTCACCAAATTGCACCCTCTTTCTTCTCATCGCAAATCCGAATCCCATTCCGATGCCGATTCCGCAATCCACCGGAGATATTTGGAGGAGAAATTTGCGGAGGAGGATGATCTCATTGCTGCTCGGAGAGGTCTCCGGCTACAGAGCATGGACGATAGTAGCGTCTTCAAACGTCGTTCTTCTCTGTTATCAAACTCAAGTAGCCGCCGTAGCCACACGCCGCAAGCTAGACCAACGTACCTCTCTTCCTCCGCTTCTTCCAACCGCCGTTCTGCTTTCTCAAGAAGCACAAGCCGTAGAGACGAAGGCAGCAGCCACAGCGGAGTGAGAAGCCACGGTTTGAAATCACGTCCCATCTCAAACAACACCAGTCCGATGACGTCACCTTTCACGAGTCCTAGAGGAAAAGATCAAACCTTAGGTGATTTATTCGGATCTGTAAAGAAACTTTCGTCTCCTACAAGCAATAGTCCGATAAACGGCGTCAAACAATCTTCTCCTTCGTCGATTTCGAAGAGTGCTAGCAAGAGAGATAAGGATGAAAGAGGCTCTACGAGCTCGGCGACATCGACCTCTCTGCCATATTCAAAGAGTAAGAGCACGAGGGATACGGCTGGATCAATTGCAAAGAGTATAAGCCGGAGAAGCACAACGCCGATAGTGTTTTCGCAGTCTACACCGCCGAAAAAACCACCAGCTGTGGAGAAAAAGCTTGAGTGTACGTTAGAAGAACTCTGCCATGGTGGAGTCAAGAACATCAAGATCAAAAGAGACATTATTACCGATGAAGGATTGATTATGCAACAAGAAGAAATGTTAAGAGTGAATATCCAACCGGGATGGAAGAAAGGGACGAAGATCACATTCGAAGGAGTAGGGAACGAAAAACCGGGCTATCTACCTGAAGATATTACATTTGTGGTTGAAGAAAAGAGACACCCTTTGTTCAAAAGACGTGGAGACGACTTAGAGATTGCGGTAGAGATTCCTCTTTTAAAGGCTTTAACAGGATGCAAACTCTCGGTGCCACTATTGAGCGGAGAGTCAATGTCGATAACCGTGGGAGATGTGATCTTCCACGGATTTGAGAAGGCGATAAAAGGTCAAGGTATGCCAAATGCTAAAGAAGAAGGTAAGCGAGGGGATTTGAGAATAACGTTTTTAGTGAATTTCCCGGAGAAGTTGAGTGAAGAACAACGATCAATGGCCTATGAGGTGTTGAAAGATTGTTCTTGGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ_C

Protein Analysis

438

Amino Acids

48.15

Weight (kDa)

9.76

Isoelectric Point (pI)

69.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ_C PF01556 260 - 417 5.7e-37 DnaJ C terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015884)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11040
fragaria_vesca FvH4_5g29110
malus_domestica MD08G1235600.v1.1 MD15G1427300.v1.1
prunus_persica Prupe.1G571300_v2.0.a1
pyrus_communis pycom15g37880
rosa_chinensis RchiOBHm_Chr7g0221771
rosa_laevigata RLG00000002125
rosa_roxburghii Rroxscaffold_3G00237740
rosa_rugosa Rorug07G0203200
rosa_samantha Rh7AG344100 Rh7BG334800 Rh7CG361500 Rh7DG341900
rosa_wichuraiana Rw7G029180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 458
AccB1I GGYRCC 1 cut(s) 1099
AccBSI CCGCTC 1 cut(s) 1113
AccI GTMKAC 1 cut(s) 749
AclI AACGTT 1 cut(s) 1232
AclWI GGATC 2 cut(s) 517, 700
AcsI RAATTY 3 cut(s) 39, 167, 1243
AcuI CTGAAG 1 cut(s) 999
AcyI GRCGYC 2 cut(s) 455, 558
AfaI GTAC 2 cut(s) 314, 796
AfiI CCNNNNNNNGG 1 cut(s) 554
AgsI TTSAA 6 cut(s) 244, 418, 663, 1001, 1024, 1297
AjiI CACGTC 2 cut(s) 425, 1031
AloI GAACNNNNNNTCC 1 cut(s) 30
AluBI AGCT 4 cut(s) 302, 633, 773, 787
AluI AGCT 4 cut(s) 302, 633, 773, 787
Alw21I GWGCWC 2 cut(s) 635, 677
Alw26I GTCTC 6 cut(s) 212, 369, 534, 840, 1003, 1029
AlwI GGATC 2 cut(s) 517, 700
AoxI GGCC 1 cut(s) 1281
ApeKI GCWGC 3 cut(s) 194, 384, 387
ApoI RAATTY 3 cut(s) 39, 167, 1243
ArsI GACNNNNNNTTYG 1 cut(s) 30
AsuC2I CCSGG 3 cut(s) 912, 966, 1250
AsuHPI GGTGA 3 cut(s) 70, 450, 509
AsuII TTCGAA 2 cut(s) 587, 942
AsuNHI GCTAGC 1 cut(s) 596
AxyI CCTNAGG 1 cut(s) 493
BaeI ACNNNNGTAYC 2 cut(s) 296, 329
BanI GGYRCC 1 cut(s) 1099
BanII GRGCYC 1 cut(s) 635
BauI CACGAG 2 cut(s) 466, 676
BbsI GAAGAC 1 cut(s) 232
Bbv12I GWGCWC 2 cut(s) 635, 677
BbvI GCAGC 3 cut(s) 181, 396, 399
BccI CCATC 2 cut(s) 437, 909
BceAI ACGGC 5 cut(s) 267, 327, 354, 571, 702
BcgI CGANNNNNNTGC 2 cut(s) 634, 668
BciVI GTATCC 1 cut(s) 676
BcnI CCSGG 3 cut(s) 912, 966, 1250
BcoDI GTCTC 6 cut(s) 212, 369, 534, 840, 1003, 1029
BfaI CTAG 3 cut(s) 303, 474, 597
BfmI CTRYAG 2 cut(s) 24, 215
BfuI GTATCC 1 cut(s) 676
BisI GCNGC 5 cut(s) 195, 280, 296, 385, 388
BlsI GCNGC 5 cut(s) 196, 281, 297, 386, 389
Bme1390I CCNGG 3 cut(s) 912, 966, 1250
BmgBI CACGTC 2 cut(s) 425, 1031
BmiI GGNNCC 1 cut(s) 1101
BmrFI CCNGG 3 cut(s) 912, 966, 1250
BmsI GCATC 2 cut(s) 118, 1076
BmtI GCTAGC 1 cut(s) 600
BpiI GAAGAC 1 cut(s) 232
Bpu14I TTCGAA 2 cut(s) 587, 942
BpuEI CTTGAG 3 cut(s) 256, 340, 809
BpuMI CCSGG 3 cut(s) 912, 966, 1250
BsaHI GRCGYC 2 cut(s) 455, 558
BsaI GGTCTC 1 cut(s) 212
BsaJI CCNNGG 4 cut(s) 409, 814, 1134, 1153
BsaWI WCCGGW 1 cut(s) 147
Bsc4I CCNNNNNNNGG 1 cut(s) 554
Bse118I RCCGGY 1 cut(s) 19
Bse1I ACTGG 1 cut(s) 444
Bse21I CCTNAGG 1 cut(s) 493
Bse3DI GCAATG 1 cut(s) 189
BseDI CCNNGG 4 cut(s) 409, 814, 1134, 1153
BseGI GGATG 4 cut(s) 187, 619, 920, 1091
BseLI CCNNNNNNNGG 1 cut(s) 554
BseMI GCAATG 1 cut(s) 189
BseNI ACTGG 1 cut(s) 444
BseRI GAGGAG 2 cut(s) 176, 191
BseXI GCAGC 3 cut(s) 181, 396, 399
BshFI GGCC 1 cut(s) 1283
BshNI GGYRCC 1 cut(s) 1099
BsiHKAI GWGCWC 2 cut(s) 635, 677
BsiSI CCGG 7 cut(s) 20, 148, 211, 715, 911, 965, 1250
BslFI GGGAC 4 cut(s) 19, 55, 411, 940
BslI CCNNNNNNNGG 1 cut(s) 554
BsmAI GTCTC 6 cut(s) 212, 369, 534, 840, 1003, 1029
BsmBI CGTCTC 3 cut(s) 369, 534, 1029
BsmFI GGGAC 4 cut(s) 19, 55, 411, 940
BsnI GGCC 1 cut(s) 1283
Bso31I GGTCTC 1 cut(s) 212
Bsp119I TTCGAA 2 cut(s) 587, 942
Bsp1286I GDGCHC 2 cut(s) 635, 677
Bsp143I GATC 8 cut(s) 184, 484, 509, 692, 837, 933, 1146, 1274
Bsp19I CCATGG 1 cut(s) 814
BspANI GGCC 1 cut(s) 1283
BspLI GGNNCC 1 cut(s) 1101
BspOI GCTAGC 1 cut(s) 600
BspPI GGATC 2 cut(s) 517, 700
BspT104I TTCGAA 2 cut(s) 587, 942
BspT107I GGYRCC 1 cut(s) 1099
BspTNI GGTCTC 1 cut(s) 212
BsrBI CCGCTC 1 cut(s) 1113
BsrDI GCAATG 1 cut(s) 189
BsrFI RCCGGY 1 cut(s) 19
BsrI ACTGG 1 cut(s) 444
BssAI RCCGGY 1 cut(s) 19
BssECI CCNNGG 4 cut(s) 409, 814, 1134, 1153
BssMI GATC 8 cut(s) 184, 484, 509, 692, 837, 933, 1146, 1274
BssNI GRCGYC 2 cut(s) 455, 558
BssSI CACGAG 2 cut(s) 466, 676
BssT1I CCWWGG 1 cut(s) 814
Bst2BI CACGAG 2 cut(s) 466, 676
Bst4CI ACNGT 2 cut(s) 413, 1135
Bst6I CTCTTC 2 cut(s) 325, 584
BstACI GRCGYC 2 cut(s) 455, 558
BstBI TTCGAA 2 cut(s) 587, 942
BstC8I GCNNGC 4 cut(s) 21, 55, 300, 598
BstDEI CTNAG 2 cut(s) 493, 1042
BstDSI CCRYGG 4 cut(s) 409, 814, 1134, 1153
BstF5I GGATG 4 cut(s) 187, 619, 920, 1091
BstKTI GATC 8 cut(s) 187, 487, 512, 695, 840, 936, 1149, 1277
BstMAI GTCTC 6 cut(s) 212, 369, 534, 840, 1003, 1029
BstMBI GATC 8 cut(s) 184, 484, 509, 692, 837, 933, 1146, 1274
BstMWI GCNNNNNNNGC 6 cut(s) 59, 137, 285, 393, 630, 720
BstNSI RCATGY 1 cut(s) 57
BstSCI CCNGG 3 cut(s) 910, 964, 1248
BstSFI CTRYAG 2 cut(s) 24, 215
BstV1I GCAGC 3 cut(s) 181, 396, 399
BstV2I GAAGAC 1 cut(s) 232
BstX2I RGATCY 1 cut(s) 509
BstYI RGATCY 1 cut(s) 509
Bsu36I CCTNAGG 1 cut(s) 493
BsuI GTATCC 1 cut(s) 676
BsuRI GGCC 1 cut(s) 1283
BtgI CCRYGG 4 cut(s) 409, 814, 1134, 1153
BtgZI GCGATG 1 cut(s) 89
BtrI CACGTC 2 cut(s) 425, 1031
BtsCI GGATG 4 cut(s) 187, 619, 920, 1091
Cac8I GCNNGC 4 cut(s) 21, 55, 300, 598
Cfr10I RCCGGY 1 cut(s) 19
CseI GACGC 2 cut(s) 226, 547
Csp6I GTAC 2 cut(s) 313, 795
CspCI CAANNNNNGTGG 2 cut(s) 1012, 1047
CviAII CATG 3 cut(s) 54, 223, 815
CviQI GTAC 2 cut(s) 313, 795
DdeI CTNAG 2 cut(s) 493, 1042
DpnI GATC 8 cut(s) 186, 486, 511, 694, 839, 935, 1148, 1276
DpnII GATC 8 cut(s) 184, 484, 509, 692, 837, 933, 1146, 1274
DraI TTTAAA 1 cut(s) 1071
Eam1104I CTCTTC 2 cut(s) 325, 584
EarI CTCTTC 2 cut(s) 325, 584
Ecl136II GAGCTC 1 cut(s) 633
Eco130I CCWWGG 1 cut(s) 814
Eco24I GRGCYC 1 cut(s) 635
Eco31I GGTCTC 1 cut(s) 212
Eco53kI GAGCTC 1 cut(s) 633
Eco57I CTGAAG 1 cut(s) 999
Eco81I CCTNAGG 1 cut(s) 493
EcoICRI GAGCTC 1 cut(s) 633
EcoT14I CCWWGG 1 cut(s) 814
EcoT38I GRGCYC 1 cut(s) 635
ErhI CCWWGG 1 cut(s) 814
Esp3I CGTCTC 3 cut(s) 369, 534, 1029
FaeI CATG 3 cut(s) 57, 226, 818
FaiI YATR 9 cut(s) 55, 224, 658, 710, 816, 875, 1187, 1287, 1315
FaqI GGGAC 4 cut(s) 19, 55, 411, 940
FatI CATG 3 cut(s) 53, 222, 814
FblI GTMKAC 1 cut(s) 749
Fnu4HI GCNGC 5 cut(s) 195, 280, 296, 385, 388
FokI GGATG 4 cut(s) 194, 626, 927, 1098
FriOI GRGCYC 1 cut(s) 635
Fsp4HI GCNGC 5 cut(s) 195, 280, 296, 385, 388
FspBI CTAG 3 cut(s) 303, 474, 597
GluI GCNGC 5 cut(s) 195, 280, 296, 385, 388
HaeIII GGCC 1 cut(s) 1283
HapII CCGG 7 cut(s) 20, 148, 211, 715, 911, 965, 1250
HgaI GACGC 2 cut(s) 226, 547
Hin1I GRCGYC 2 cut(s) 455, 558
Hin1II CATG 3 cut(s) 57, 226, 818
HindIII AAGCTT 1 cut(s) 785
HinfI GANTC 7 cut(s) 7, 116, 134, 469, 822, 1060, 1118
HpaII CCGG 7 cut(s) 20, 148, 211, 715, 911, 965, 1250
HphI GGTGA 3 cut(s) 70, 450, 509
Hpy166II GTNNAC 2 cut(s) 750, 795
Hpy188I TCNGA 6 cut(s) 115, 127, 201, 450, 509, 549
Hpy188III TCNNGA 4 cut(s) 357, 466, 826, 835
Hpy8I GTNNAC 2 cut(s) 750, 795
Hpy99I CGWCG 2 cut(s) 252, 583
HpyAV CCTTC 6 cut(s) 374, 585, 857, 938, 1159, 1199
HpyCH4III ACNGT 2 cut(s) 413, 1135
HpyCH4IV ACGT 7 cut(s) 247, 311, 424, 455, 797, 1030, 1232
HpyCH4V TGCA 5 cut(s) 57, 88, 701, 877, 1089
HpyF10VI GCNNNNNNNGC 6 cut(s) 59, 137, 285, 393, 630, 720
HpyF3I CTNAG 2 cut(s) 493, 1042
HpySE526I ACGT 7 cut(s) 247, 311, 424, 455, 797, 1030, 1232
Hsp92I GRCGYC 2 cut(s) 455, 558
Hsp92II CATG 3 cut(s) 57, 226, 818
KroI GCCGGC 1 cut(s) 19
KroNI GCCGGC 1 cut(s) 21
Kzo9I GATC 8 cut(s) 184, 484, 509, 692, 837, 933, 1146, 1274
Lsp1109I GCAGC 3 cut(s) 181, 396, 399
LweI GCATC 2 cut(s) 118, 1076
MaeI CTAG 3 cut(s) 303, 474, 597
MaeII ACGT 7 cut(s) 247, 311, 424, 455, 797, 1030, 1232
MaeIII GTNAC 2 cut(s) 76, 456
MalI GATC 8 cut(s) 186, 486, 511, 694, 839, 935, 1148, 1276
MbiI CCGCTC 1 cut(s) 1113
MboI GATC 8 cut(s) 184, 484, 509, 692, 837, 933, 1146, 1274
MfeI CAATTG 1 cut(s) 696
MflI RGATCY 1 cut(s) 509
MhlI GDGCHC 2 cut(s) 635, 677
MluCI AATT 5 cut(s) 39, 83, 167, 696, 1243
MlyI GAGTC 3 cut(s) 478, 831, 1127
MmeI TCCRAC 2 cut(s) 360, 931
MroNI GCCGGC 1 cut(s) 19
MseI TTAA 3 cut(s) 893, 1070, 1079
MslI CAYNNNNRTG 1 cut(s) 126
MspA1I CMGCKG 2 cut(s) 396, 773
MspI CCGG 7 cut(s) 20, 148, 211, 715, 911, 965, 1250
MspR9I CCNGG 3 cut(s) 912, 966, 1250
MunI CAATTG 1 cut(s) 696
MwoI GCNNNNNNNGC 6 cut(s) 59, 137, 285, 393, 630, 720
NaeI GCCGGC 1 cut(s) 21
NciI CCSGG 3 cut(s) 912, 966, 1250
NcoI CCATGG 1 cut(s) 814
NdeII GATC 8 cut(s) 184, 484, 509, 692, 837, 933, 1146, 1274
NgoMIV GCCGGC 1 cut(s) 19
NheI GCTAGC 1 cut(s) 596
NlaIII CATG 3 cut(s) 57, 226, 818
NlaIV GGNNCC 1 cut(s) 1101
NmeAIII GCCGAG 1 cut(s) 614
NmuCI GTSAC 2 cut(s) 76, 456
NspI RCATGY 1 cut(s) 57
NspV TTCGAA 2 cut(s) 587, 942
PaeI GCATGC 1 cut(s) 57
PcsI WCGNNNNNNNCGW 4 cut(s) 234, 584, 635, 641
PdiI GCCGGC 1 cut(s) 21
PfeI GAWTC 3 cut(s) 116, 134, 1060
PfoI TCCNGGA 1 cut(s) 1248
PkrI GCNGC 5 cut(s) 196, 281, 297, 386, 389
PleI GAGTC 3 cut(s) 477, 830, 1126
PpsI GAGTC 3 cut(s) 477, 830, 1126
Psp124BI GAGCTC 1 cut(s) 635
Psp1406I AACGTT 1 cut(s) 1232
PspN4I GGNNCC 1 cut(s) 1101
PsuI RGATCY 1 cut(s) 509
PvuII CAGCTG 1 cut(s) 773
RsaI GTAC 2 cut(s) 314, 796
RsaNI GTAC 2 cut(s) 313, 795
RseI CAYNNNNRTG 1 cut(s) 126
SacI GAGCTC 1 cut(s) 635
SaqAI TTAA 3 cut(s) 893, 1070, 1079
SatI GCNGC 5 cut(s) 195, 280, 296, 385, 388
Sau3AI GATC 8 cut(s) 184, 484, 509, 692, 837, 933, 1146, 1274
SchI GAGTC 3 cut(s) 478, 831, 1127
ScrFI CCNGG 3 cut(s) 912, 966, 1250
SduI GDGCHC 2 cut(s) 635, 677
SfaNI GCATC 2 cut(s) 118, 1076
SfcI CTRYAG 2 cut(s) 24, 215
SfuI TTCGAA 2 cut(s) 587, 942
SmiMI CAYNNNNRTG 1 cut(s) 126
SmlI CTYRAG 3 cut(s) 271, 355, 788
SmoI CTYRAG 3 cut(s) 271, 355, 788
SphI GCATGC 1 cut(s) 57
Sse9I AATT 5 cut(s) 39, 83, 167, 696, 1243
SspMI CTAG 3 cut(s) 303, 474, 597
SstI GAGCTC 1 cut(s) 635
StyD4I CCNGG 3 cut(s) 910, 964, 1248
StyI CCWWGG 1 cut(s) 814
TaaI ACNGT 2 cut(s) 413, 1135
TaiI ACGT 7 cut(s) 250, 314, 427, 458, 800, 1033, 1235
TaqI TCGA 5 cut(s) 581, 587, 644, 942, 1127
TasI AATT 5 cut(s) 39, 83, 167, 696, 1243
TauI GCSGC 2 cut(s) 282, 298
TfiI GAWTC 3 cut(s) 116, 134, 1060
Tru1I TTAA 3 cut(s) 893, 1070, 1079
Tru9I TTAA 3 cut(s) 893, 1070, 1079
TseFI GTSAC 2 cut(s) 76, 456
TseI GCWGC 3 cut(s) 194, 384, 387
Tsp45I GTSAC 2 cut(s) 76, 456
TspDTI ATGAA 2 cut(s) 630, 876
TspGWI ACGGA 1 cut(s) 1170
XapI RAATTY 3 cut(s) 39, 167, 1243
XceI RCATGY 1 cut(s) 57
XmiI GTMKAC 1 cut(s) 749
XspI CTAG 3 cut(s) 303, 474, 597
ZraI GACGTC 1 cut(s) 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.