Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0015884

Physical Location & Seq

Genomic Coordinates Forward (+)

17789734 .. 17791570

Gene Structure 1837 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0203200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGCCGGAGGTATAGCAACAAGGTGGAGGATTCTAAGCGGTGAAGACGAGTGGGAGGGTCTACTAGACCCTCTCGACATTGATCTCCGCCACTATATTATTCACTACGGTGAAAGGGCGGGAGCCGTAGCCGTGGTGTACGAACCAAAGTCGAAGAACTACCGACTTCCTCGATACTTAAAGGAACATTTGTTCTCAAAGGTCGGTTTGCAGAGTGGTAACCCATACAAGTACGTGGTGAAAGAATACTTGTATGCAGCAATCCATCTGCCATTATCGATCGGGAAATCAAATTTTCTCGGTTTTGTTGCGGTGACAACAGATGAAGGAGCCAAAGTGTTGGGGAGGAGGGACGTTTTGATTTCTTGGAGAGGAACCCAGTTGGAACATGAGTGGCTTGTTGACGACGATATCGCTTTAGTTTCAGCTTCTGACATTCTGGGATCGAATAACGGACTCGATCCTTTGGTGCACCAAGGTTGGCTGTCCTACTACACTAATAAGGACATTTTTTCCCCACACAATCAACTACGTAGTTGTAGAGATCAGGTTCTAGCTGCACTTAAATCAATACTAGAAGAATACAAGGATGAAGAAATCAGCATTACTGTCACTGGTCACAGCATGGGTGCTGCAATGGCAACGTTAAACGCAACCGATATTGTCTGTAACGGACACAACAAACCCACAGATCAATCGGACAAGCTGATTCCTGTGACAGCAATTGTGTTTGCCAGCCCCCGACTAGGCGATGAGGGATTCGAGAAGGTGTTTTCTGGTCTCGAAAACCTTCACGTCTTGCGTGTCACTAATGACCAAGATATTGTTCCTAAATTACCATATTTGGATGGTAAATATGTTCATGTTGGAAAAGAGTTGAGAATTGACAGTCTCAAGTCGCCTTACGTGAAGGTTTTCCCTGAATCAGATGAAGCAGGAAAGCTTGGCAGTTTGCACGATCTGGAGGTTTACTTGCATGGTGTTGCAGGGACACAGGGAATCAAAAGTAACGATTTTAAGTTGGAAGTGAATCGTGATCTCGCACTGGTAAACAAATATATTGATCTTCTGAAGGACGAACATAAGGTAGTTGGTAGCTGGTGGACTGAGAAGAACAAGTCTATGATTCAAATGGATGATGGCTCTTGGGTCTTGGATGATGGTGAGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001578 GO:0005575 GO:0005623 GO:0005929 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0031514 GO:0035082 GO:0036126 GO:0042995 GO:0043226 GO:0044085 GO:0044422 GO:0044441 GO:0044463 GO:0044464 GO:0044782 GO:0060271 GO:0070925 GO:0071840 GO:0097223 GO:0097224 GO:0097729 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1904158

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

390

Amino Acids

43.65

Weight (kDa)

5.4

Isoelectric Point (pI)

26.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_3	PF01764	121 - 282	2.4e-32	Lipase (class 3)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015884)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11040
fragaria_vesca	FvH4_5g29110
malus_domestica	MD08G1235600.v1.1 MD15G1427300.v1.1
prunus_persica	Prupe.1G571300_v2.0.a1
pyrus_communis	pycom15g37880
rosa_chinensis	RchiOBHm_Chr7g0221771
rosa_laevigata	RLG00000002125
rosa_roxburghii	Rroxscaffold_3G00237740
rosa_rugosa	Rorug07G0203200
rosa_samantha	Rh7AG344100 Rh7BG334800 Rh7CG361500 Rh7DG341900
rosa_wichuraiana	Rw7G029180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	61
AciI	CCGC	4 cut(s)	39, 88, 119, 311
AclI	AACGTT	1 cut(s)	644
AclWI	GGATC	2 cut(s)	451, 455
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	292
AcuI	CTGAAG	1 cut(s)	1091
AfaI	GTAC	2 cut(s)	140, 233
AfiI	CCNNNNNNNGG	1 cut(s)	746
AgsI	TTSAA	1 cut(s)	1130
AjiI	CACGTC	1 cut(s)	796
AjuI	GAANNNNNNNTTGG	2 cut(s)	810, 842
AleI	CACNNNNGTG	1 cut(s)	108
AloI	GAACNNNNNNTCC	2 cut(s)	176, 208
AluBI	AGCT	5 cut(s)	428, 557, 706, 943, 1098
AluI	AGCT	5 cut(s)	428, 557, 706, 943, 1098
Alw21I	GWGCWC	1 cut(s)	474
Alw26I	GTCTC	2 cut(s)	785, 896
Alw44I	GTGCAC	1 cut(s)	470
AlwI	GGATC	2 cut(s)	451, 455
AlwNI	CAGNNNCTG	1 cut(s)	431
AoxI	GGCC	1 cut(s)	3
ApaLI	GTGCAC	1 cut(s)	470
ApeKI	GCWGC	3 cut(s)	257, 557, 632
ApoI	RAATTY	1 cut(s)	292
Asp700I	GAANNNNTTC	2 cut(s)	789, 914
AsuHPI	GGTGA	4 cut(s)	53, 122, 250, 325
BaeGI	GKGCMC	1 cut(s)	474
BbsI	GAAGAC	1 cut(s)	51
Bbv12I	GWGCWC	1 cut(s)	474
BbvI	GCAGC	3 cut(s)	269, 544, 619
BccI	CCATC	4 cut(s)	273, 842, 1133, 1154
BceAI	ACGGC	2 cut(s)	110, 116
BcoDI	GTCTC	2 cut(s)	785, 896
BfaI	CTAG	4 cut(s)	65, 554, 575, 746
BisI	GCNGC	3 cut(s)	258, 558, 633
BlsI	GCNGC	3 cut(s)	259, 559, 634
BmgBI	CACGTC	1 cut(s)	796
BmiI	GGNNCC	3 cut(s)	124, 331, 376
BmrI	ACTGGG	1 cut(s)	373
BmuI	ACTGGG	1 cut(s)	373
BpiI	GAAGAC	1 cut(s)	51
BpmI	CTGGAG	1 cut(s)	983
BpuEI	CTTGAG	1 cut(s)	878
Bsa29I	ATCGAT	1 cut(s)	278
BsaAI	YACGTR	3 cut(s)	235, 533, 907
BsaI	GGTCTC	1 cut(s)	785
BsaJI	CCNNGG	2 cut(s)	132, 475
BsaXI	ACNNNNNCTCC	2 cut(s)	321, 351
Bsc4I	CCNNNNNNNGG	1 cut(s)	746
Bse1I	ACTGG	3 cut(s)	379, 619, 1050
Bse3DI	GCAATG	1 cut(s)	642
BseCI	ATCGAT	1 cut(s)	278
BseDI	CCNNGG	2 cut(s)	132, 475
BseGI	GGATG	4 cut(s)	595, 853, 1141, 1162
BseLI	CCNNNNNNNGG	1 cut(s)	746
BseMI	GCAATG	1 cut(s)	642
BseMII	CTCAG	1 cut(s)	1098
BseNI	ACTGG	3 cut(s)	379, 619, 1050
BseRI	GAGGAG	1 cut(s)	361
BseSI	GKGCMC	1 cut(s)	474
BseXI	GCAGC	3 cut(s)	269, 544, 619
BsgI	GTGCAG	1 cut(s)	543
Bsh1285I	CGRYCG	1 cut(s)	282
BshFI	GGCC	1 cut(s)	5
BshVI	ATCGAT	1 cut(s)	278
BsiEI	CGRYCG	1 cut(s)	282
BsiHKAI	GWGCWC	1 cut(s)	474
BsiSI	CCGG	1 cut(s)	6
BslFI	GGGAC	2 cut(s)	365, 1003
BslI	CCNNNNNNNGG	1 cut(s)	746
BsmAI	GTCTC	2 cut(s)	785, 896
BsmFI	GGGAC	2 cut(s)	365, 1003
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	785
Bsp1286I	GDGCHC	1 cut(s)	474
Bsp143I	GATC	9 cut(s)	82, 279, 443, 460, 544, 691, 958, 1036, 1063
BspACI	CCGC	4 cut(s)	39, 88, 119, 311
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	1099
BspDI	ATCGAT	1 cut(s)	278
BspLI	GGNNCC	3 cut(s)	124, 331, 376
BspPI	GGATC	2 cut(s)	451, 455
BspTNI	GGTCTC	1 cut(s)	785
BsrDI	GCAATG	1 cut(s)	642
BsrI	ACTGG	3 cut(s)	379, 619, 1050
BssECI	CCNNGG	2 cut(s)	132, 475
BssMI	GATC	9 cut(s)	82, 279, 443, 460, 544, 691, 958, 1036, 1063
BssT1I	CCWWGG	1 cut(s)	475
Bst4CI	ACNGT	3 cut(s)	110, 610, 890
BstBAI	YACGTR	3 cut(s)	235, 533, 907
BstC8I	GCNNGC	1 cut(s)	736
BstDEI	CTNAG	2 cut(s)	35, 1107
BstDSI	CCRYGG	1 cut(s)	132
BstEII	GGTNACC	1 cut(s)	218
BstF5I	GGATG	4 cut(s)	595, 853, 1141, 1162
BstKTI	GATC	9 cut(s)	85, 282, 446, 463, 547, 694, 961, 1039, 1066
BstMAI	GTCTC	2 cut(s)	785, 896
BstMBI	GATC	9 cut(s)	82, 279, 443, 460, 544, 691, 958, 1036, 1063
BstMCI	CGRYCG	1 cut(s)	282
BstMWI	GCNNNNNNNGC	1 cut(s)	638
BstPI	GGTNACC	1 cut(s)	218
BstSLI	GKGCMC	1 cut(s)	474
BstSNI	TACGTA	1 cut(s)	533
BstV1I	GCAGC	3 cut(s)	269, 544, 619
BstV2I	GAAGAC	1 cut(s)	51
BstXI	CCANNNNNNTGG	1 cut(s)	340
Bsu15I	ATCGAT	1 cut(s)	278
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	278
BtgI	CCRYGG	1 cut(s)	132
BtgZI	GCGATG	1 cut(s)	765
BtrI	CACGTC	1 cut(s)	796
BtsCI	GGATG	4 cut(s)	595, 853, 1141, 1162
BtsIMutI	CAGTG	2 cut(s)	612, 1043
Cac8I	GCNNGC	1 cut(s)	736
CaiI	CAGNNNCTG	1 cut(s)	431
ClaI	ATCGAT	1 cut(s)	278
Csp6I	GTAC	2 cut(s)	139, 232
CviAII	CATG	4 cut(s)	389, 625, 863, 977
CviQI	GTAC	2 cut(s)	139, 232
DdeI	CTNAG	2 cut(s)	35, 1107
DpnI	GATC	9 cut(s)	84, 281, 445, 462, 546, 693, 960, 1038, 1065
DpnII	GATC	9 cut(s)	82, 279, 443, 460, 544, 691, 958, 1036, 1063
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	77
Eco105I	TACGTA	1 cut(s)	533
Eco130I	CCWWGG	1 cut(s)	475
Eco31I	GGTCTC	1 cut(s)	785
Eco32I	GATATC	1 cut(s)	412
Eco57I	CTGAAG	1 cut(s)	1091
Eco91I	GGTNACC	1 cut(s)	218
EcoO65I	GGTNACC	1 cut(s)	218
EcoRV	GATATC	1 cut(s)	412
EcoT14I	CCWWGG	1 cut(s)	475
ErhI	CCWWGG	1 cut(s)	475
FaeI	CATG	4 cut(s)	392, 628, 866, 980
FaqI	GGGAC	2 cut(s)	365, 1003
FatI	CATG	4 cut(s)	388, 624, 862, 976
FauI	CCCGC	1 cut(s)	112
FblI	GTMKAC	1 cut(s)	61
Fnu4HI	GCNGC	3 cut(s)	258, 558, 633
FokI	GGATG	4 cut(s)	602, 860, 1148, 1169
Fsp4HI	GCNGC	3 cut(s)	258, 558, 633
FspBI	CTAG	4 cut(s)	65, 554, 575, 746
GluI	GCNGC	3 cut(s)	258, 558, 633
GsuI	CTGGAG	1 cut(s)	983
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	6
Hin1II	CATG	4 cut(s)	392, 628, 866, 980
HincII	GTYRAC	1 cut(s)	403
HindII	GTYRAC	1 cut(s)	403
HindIII	AAGCTT	1 cut(s)	941
HinfI	GANTC	9 cut(s)	31, 456, 709, 759, 923, 999, 1030, 1126, 1166
HpaII	CCGG	1 cut(s)	6
HphI	GGTGA	4 cut(s)	53, 122, 250, 325
Hpy166II	GTNNAC	7 cut(s)	62, 139, 403, 472, 970, 1051, 1104
Hpy188I	TCNGA	4 cut(s)	433, 700, 928, 1071
Hpy188III	TCNNGA	7 cut(s)	74, 283, 763, 782, 962, 1034, 1170
Hpy8I	GTNNAC	7 cut(s)	62, 139, 403, 472, 970, 1051, 1104
Hpy99I	CGWCG	1 cut(s)	410
HpyAV	CCTTC	5 cut(s)	320, 760, 800, 904, 1066
HpyCH4III	ACNGT	3 cut(s)	110, 610, 890
HpyCH4IV	ACGT	6 cut(s)	234, 354, 532, 644, 795, 906
HpyCH4V	TGCA	8 cut(s)	211, 257, 472, 560, 635, 955, 976, 986
HpyF10VI	GCNNNNNNNGC	1 cut(s)	638
HpyF3I	CTNAG	2 cut(s)	35, 1107
HpySE526I	ACGT	6 cut(s)	234, 354, 532, 644, 795, 906
Hsp92II	CATG	4 cut(s)	392, 628, 866, 980
Kzo9I	GATC	9 cut(s)	82, 279, 443, 460, 544, 691, 958, 1036, 1063
LmnI	GCTCC	2 cut(s)	122, 329
Lsp1109I	GCAGC	3 cut(s)	269, 544, 619
MaeI	CTAG	4 cut(s)	65, 554, 575, 746
MaeII	ACGT	6 cut(s)	234, 354, 532, 644, 795, 906
MaeIII	GTNAC	8 cut(s)	218, 313, 610, 617, 668, 715, 805, 1007
MalI	GATC	9 cut(s)	84, 281, 445, 462, 546, 693, 960, 1038, 1065
MboI	GATC	9 cut(s)	82, 279, 443, 460, 544, 691, 958, 1036, 1063
MboII	GAAGA	6 cut(s)	56, 166, 590, 605, 1058, 1123
MfeI	CAATTG	1 cut(s)	723
MhlI	GDGCHC	1 cut(s)	474
MluCI	AATT	4 cut(s)	292, 723, 833, 882
MlyI	GAGTC	1 cut(s)	450
MmeI	TCCRAC	3 cut(s)	363, 847, 1002
MnlI	CCTC	9 cut(s)	21, 49, 81, 180, 339, 342, 365, 748, 958
MroXI	GAANNNNTTC	2 cut(s)	789, 914
MseI	TTAA	4 cut(s)	179, 564, 647, 1017
MslI	CAYNNNNRTG	1 cut(s)	108
MspI	CCGG	1 cut(s)	6
MunI	CAATTG	1 cut(s)	723
MwoI	GCNNNNNNNGC	1 cut(s)	638
NdeII	GATC	9 cut(s)	82, 279, 443, 460, 544, 691, 958, 1036, 1063
NlaIII	CATG	4 cut(s)	392, 628, 866, 980
NlaIV	GGNNCC	3 cut(s)	124, 331, 376
NmuCI	GTSAC	5 cut(s)	313, 610, 617, 715, 805
OliI	CACNNNNGTG	1 cut(s)	108
PdmI	GAANNNNTTC	2 cut(s)	789, 914
PfeI	GAWTC	7 cut(s)	31, 709, 759, 923, 999, 1030, 1126
PkrI	GCNGC	3 cut(s)	259, 559, 634
Ple19I	CGATCG	1 cut(s)	282
PleI	GAGTC	1 cut(s)	450
PpsI	GAGTC	1 cut(s)	450
Ppu21I	YACGTR	3 cut(s)	235, 533, 907
Psp1406I	AACGTT	1 cut(s)	644
PspEI	GGTNACC	1 cut(s)	218
PspN4I	GGNNCC	3 cut(s)	124, 331, 376
PstNI	CAGNNNCTG	1 cut(s)	431
PvuI	CGATCG	1 cut(s)	282
RsaI	GTAC	2 cut(s)	140, 233
RsaNI	GTAC	2 cut(s)	139, 232
RseI	CAYNNNNRTG	1 cut(s)	108
SaqAI	TTAA	4 cut(s)	179, 564, 647, 1017
SatI	GCNGC	3 cut(s)	258, 558, 633
Sau3AI	GATC	9 cut(s)	82, 279, 443, 460, 544, 691, 958, 1036, 1063
SchI	GAGTC	1 cut(s)	450
SduI	GDGCHC	1 cut(s)	474
SmiMI	CAYNNNNRTG	1 cut(s)	108
SmlI	CTYRAG	1 cut(s)	893
SmoI	CTYRAG	1 cut(s)	893
SnaBI	TACGTA	1 cut(s)	533
Sse9I	AATT	4 cut(s)	292, 723, 833, 882
SsiI	CCGC	4 cut(s)	39, 88, 119, 311
SspMI	CTAG	4 cut(s)	65, 554, 575, 746
StyI	CCWWGG	1 cut(s)	475
TaaI	ACNGT	3 cut(s)	110, 610, 890
TaiI	ACGT	6 cut(s)	237, 357, 535, 647, 798, 909
TaqI	TCGA	8 cut(s)	75, 152, 172, 278, 446, 459, 762, 783
TasI	AATT	4 cut(s)	292, 723, 833, 882
TfiI	GAWTC	7 cut(s)	31, 709, 759, 923, 999, 1030, 1126
Tru1I	TTAA	4 cut(s)	179, 564, 647, 1017
Tru9I	TTAA	4 cut(s)	179, 564, 647, 1017
TscAI	CASTG	2 cut(s)	619, 1050
TseFI	GTSAC	5 cut(s)	313, 610, 617, 715, 805
TseI	GCWGC	3 cut(s)	257, 557, 632
Tsp45I	GTSAC	5 cut(s)	313, 610, 617, 715, 805
TspDTI	ATGAA	4 cut(s)	339, 606, 851, 945
TspGWI	ACGGA	2 cut(s)	468, 687
TspRI	CASTG	2 cut(s)	619, 1050
VneI	GTGCAC	1 cut(s)	470
XapI	RAATTY	1 cut(s)	292
XmiI	GTMKAC	1 cut(s)	61
XmnI	GAANNNNTTC	2 cut(s)	789, 914
XspI	CTAG	4 cut(s)	65, 554, 575, 746

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.