Rh7CG361500

DnaJ homolog subfamily B member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0015884
Physical Location & Seq
Forward (+)
44866450 .. 44868599
2150 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG361500.1

Sequence Viewer

Length: 1239 bp
ATGCTCGGAATATCGAATATTTGCAAGGGATACAAGTCCTTTTTATTGAAATGGAACGCCCAAAACAAGCATTCTCGTTCGATTTCAGAAAGTGATGACACGTCCAAGGAGAAAGATGAGAATGATTTTATAATTAGTTATCCATCAACACCAGTAGGTGGTTTGAATCATACGCACAGCATTGATGATAGCTTACTCATGCGTCGAACTCTTTCGAGGAATAAAAGTAGCAGAAGATGCAAGACCCCTACGCCAAGGTCCTTCTCAAGAAGTATGAGCCGGAGCACCACCCCGAATTCATTATCGAGCATTTCAAGTCGTAGGAACCCCTCCGAGACCGATATCCTTGCCTCTATAACAAGAAATCTGAGTCGGGAGGCCGAAATTGCTGCCTCTATATCAAGGAATATAAGTAGGAATATGAGCAGCAATTTGAGCAGGAATGCGAGCAGCAGACACCCGTCTGAGTCGGAATTACCCTCTCCATCACCTGCATCTCCACCGCCTGCCACTCCAACACCGGCCTCACCTTCACCTGCCGCCTCTCCATCTACCGCTCGATCGCCTCATACCAGTAAAACAACAGGCACATCTGAAACGGACCCTACCACACCTCTATCAAGAACTCCGAGCAGGAGGAGCACCACCCCCATTGTGTTCTCTCAGACAACTGCTAGAAGGAAACCTCCCCCGGTTGAGAAGAAGCTTGAATTCACACTCGAGGAGCTGTGTCATGGATGCGTGAAGAAGATCCAGGTTACTAGAGATGTCATAAACCATGCCGGGATTATTGTGAAAGAAGAGGAAGTACTGAAAATAAACGTGCAGCCAGGTTGGAGGAAAGGAACCAAGATTACATTCGAAGGGAAAGGGGATGAGAAACCAGGGTACCTTCCAGCCGATATCATCTTCTTGATAGATGAAAAGAGGCATCATTTGTTCAAAAGAGCAGGCCGGGACGATTTGGAAATCGCTGTTGAGATTCCACTGGCGGATGCATTGGGAGGCTGCTCGTTTCCAGCTCCTTTGTTAGGAGGTGAAACAGTGAGTCTGTCATTCGACGAAATTATACATCATGGTTATGAAAAGGTCATTGAAGGACAAGGAATGCCAAAGCTTAAAGAACCAACAAAGAGAGGTGACCTCCGCATTACTTGTCTCGTTAATTTTCCCCAAAAATTGAGCGACGAGCAACGAGCAGAAGCTGTTTCAATTTTACAAGATTGTTCTTATCAGTAA

Protein Analysis

412

Amino Acids

45.33

Weight (kDa)

9.3

Isoelectric Point (pI)

70.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ_C PF01556 233 - 391 1.7e-34 DnaJ C terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015884)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11040
fragaria_vesca FvH4_5g29110
malus_domestica MD08G1235600.v1.1 MD15G1427300.v1.1
prunus_persica Prupe.1G571300_v2.0.a1
pyrus_communis pycom15g37880
rosa_chinensis RchiOBHm_Chr7g0221771
rosa_laevigata RLG00000002125
rosa_roxburghii Rroxscaffold_3G00237740
rosa_rugosa Rorug07G0203200
rosa_samantha Rh7AG344100 Rh7BG334800 Rh7CG361500 Rh7DG341900
rosa_wichuraiana Rw7G029180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 131
AarI CACCTGC 2 cut(s) 499, 544
Acc36I ACCTGC 2 cut(s) 499, 544
Acc65I GGTACC 1 cut(s) 888
AccB1I GGYRCC 1 cut(s) 888
AccB7I CCANNNNNTGG 1 cut(s) 158
AccBSI CCGCTC 1 cut(s) 557
AciI CCGC 5 cut(s) 503, 540, 555, 992, 1147
AclWI GGATC 1 cut(s) 745
AcsI RAATTY 2 cut(s) 295, 710
AfaI GTAC 2 cut(s) 810, 890
AfiI CCNNNNNNNGG 2 cut(s) 158, 1031
AflIII ACRYGT 1 cut(s) 99
AgsI TTSAA 7 cut(s) 49, 166, 315, 710, 943, 1097, 1212
AjiI CACGTC 1 cut(s) 102
AjnI CCWGG 3 cut(s) 753, 829, 883
AjuI GAANNNNNNNTTGG 2 cut(s) 842, 874
AluBI AGCT 6 cut(s) 192, 706, 727, 1022, 1117, 1205
AluI AGCT 6 cut(s) 192, 706, 727, 1022, 1117, 1205
Alw21I GWGCWC 2 cut(s) 287, 644
Alw26I GTCTC 2 cut(s) 329, 1163
AlwI GGATC 1 cut(s) 745
AlwNI CAGNNNCTG 1 cut(s) 1205
Ama87I CYCGRG 1 cut(s) 719
AoxI GGCC 3 cut(s) 378, 522, 952
ApeKI GCWGC 5 cut(s) 389, 426, 450, 826, 1008
ApoI RAATTY 2 cut(s) 295, 710
Asp700I GAANNNNTTC 1 cut(s) 211
Asp718I GGTACC 1 cut(s) 888
AspS9I GGNCC 2 cut(s) 258, 601
AsuC2I CCSGG 3 cut(s) 692, 784, 956
AsuHPI GGTGA 5 cut(s) 480, 519, 525, 1049, 1151
AsuII TTCGAA 1 cut(s) 861
AvaI CYCGRG 1 cut(s) 719
AvaII GGWCC 2 cut(s) 258, 601
BaeI ACNNNNGTAYC 2 cut(s) 872, 905
BanI GGYRCC 1 cut(s) 888
BarI GAAGNNNNNNTAC 2 cut(s) 792, 824
Bbv12I GWGCWC 2 cut(s) 287, 644
BbvI GCAGC 5 cut(s) 376, 438, 462, 838, 995
BccI CCATC 3 cut(s) 151, 493, 556
BcgI CGANNNNNNTGC 4 cut(s) 329, 363, 371, 405
BciT130I CCWGG 3 cut(s) 755, 831, 885
BciVI GTATCC 1 cut(s) 23
BcnI CCSGG 3 cut(s) 692, 784, 956
BcoDI GTCTC 2 cut(s) 329, 1163
BfaI CTAG 2 cut(s) 675, 762
BfuAI ACCTGC 2 cut(s) 499, 544
BfuI GTATCC 1 cut(s) 23
BisI GCNGC 6 cut(s) 390, 427, 451, 540, 827, 1009
BlsI GCNGC 6 cut(s) 391, 428, 452, 541, 828, 1010
BmcAI AGTACT 1 cut(s) 810
Bme1390I CCNGG 6 cut(s) 692, 755, 784, 831, 885, 956
Bme18I GGWCC 2 cut(s) 258, 601
BmeT110I CYCGRG 1 cut(s) 719
BmgBI CACGTC 1 cut(s) 102
BmgT120I GGNCC 2 cut(s) 258, 601
BmiI GGNNCC 4 cut(s) 326, 603, 847, 890
BmrFI CCNGG 6 cut(s) 692, 755, 784, 831, 885, 956
BmsI GCATC 5 cut(s) 227, 503, 728, 940, 985
BoxI GACNNNNGTC 1 cut(s) 460
BplI GAGNNNNNCTC 2 cut(s) 1128, 1160
Bpu14I TTCGAA 1 cut(s) 861
BpuEI CTTGAG 1 cut(s) 250
BpuMI CCSGG 3 cut(s) 692, 784, 956
BsaI GGTCTC 1 cut(s) 329
BsaJI CCNNGG 4 cut(s) 105, 254, 690, 884
Bsc4I CCNNNNNNNGG 2 cut(s) 158, 1031
Bse118I RCCGGY 1 cut(s) 520
Bse1I ACTGG 3 cut(s) 152, 573, 993
BseBI CCWGG 3 cut(s) 755, 831, 885
BseDI CCNNGG 4 cut(s) 105, 254, 690, 884
BseGI GGATG 3 cut(s) 743, 880, 1000
BseLI CCNNNNNNNGG 2 cut(s) 158, 1031
BseMII CTCAG 3 cut(s) 359, 456, 677
BseNI ACTGG 3 cut(s) 152, 573, 993
BseRI GAGGAG 2 cut(s) 652, 737
BseXI GCAGC 5 cut(s) 376, 438, 462, 838, 995
BsgI GTGCAG 1 cut(s) 845
Bsh1285I CGRYCG 1 cut(s) 563
BshFI GGCC 3 cut(s) 380, 524, 954
BshNI GGYRCC 1 cut(s) 888
BsiEI CGRYCG 1 cut(s) 563
BsiHKAI GWGCWC 2 cut(s) 287, 644
BsiHKCI CYCGRG 1 cut(s) 719
BsiSI CCGG 5 cut(s) 280, 521, 692, 783, 955
BslFI GGGAC 1 cut(s) 971
BslI CCNNNNNNNGG 2 cut(s) 158, 1031
BsmAI GTCTC 2 cut(s) 329, 1163
BsmFI GGGAC 1 cut(s) 971
BsmI GAATGC 3 cut(s) 70, 448, 1113
BsnI GGCC 3 cut(s) 380, 524, 954
Bso31I GGTCTC 1 cut(s) 329
BsoBI CYCGRG 1 cut(s) 719
Bsp119I TTCGAA 1 cut(s) 861
Bsp1286I GDGCHC 2 cut(s) 287, 644
Bsp143I GATC 2 cut(s) 560, 750
BspACI CCGC 5 cut(s) 503, 540, 555, 992, 1147
BspANI GGCC 3 cut(s) 380, 524, 954
BspCNI CTCAG 3 cut(s) 360, 457, 676
BspLI GGNNCC 4 cut(s) 326, 603, 847, 890
BspMI ACCTGC 2 cut(s) 499, 544
BspPI GGATC 1 cut(s) 745
BspT104I TTCGAA 1 cut(s) 861
BspT107I GGYRCC 1 cut(s) 888
BspTNI GGTCTC 1 cut(s) 329
BsrBI CCGCTC 1 cut(s) 557
BsrFI RCCGGY 1 cut(s) 520
BsrI ACTGG 3 cut(s) 152, 573, 993
BssAI RCCGGY 1 cut(s) 520
BssECI CCNNGG 4 cut(s) 105, 254, 690, 884
BssMI GATC 2 cut(s) 560, 750
BssT1I CCWWGG 2 cut(s) 105, 254
Bst2UI CCWGG 3 cut(s) 755, 831, 885
Bst4CI ACNGT 1 cut(s) 1045
Bst6I CTCTTC 1 cut(s) 795
BstAPI GCANNNNNTGC 1 cut(s) 237
BstBI TTCGAA 1 cut(s) 861
BstC8I GCNNGC 3 cut(s) 448, 507, 952
BstDEI CTNAG 3 cut(s) 368, 465, 663
BstEII GGTNACC 1 cut(s) 1139
BstENI CCTNNNNNAGG 1 cut(s) 1029
BstF5I GGATG 3 cut(s) 743, 880, 1000
BstKTI GATC 2 cut(s) 563, 753
BstMAI GTCTC 2 cut(s) 329, 1163
BstMBI GATC 2 cut(s) 560, 750
BstMCI CGRYCG 1 cut(s) 563
BstMWI GCNNNNNNNGC 4 cut(s) 237, 386, 435, 639
BstNI CCWGG 3 cut(s) 755, 831, 885
BstPAI GACNNNNGTC 1 cut(s) 460
BstPI GGTNACC 1 cut(s) 1139
BstSCI CCNGG 6 cut(s) 690, 753, 782, 829, 883, 954
BstV1I GCAGC 5 cut(s) 376, 438, 462, 838, 995
BstX2I RGATCY 1 cut(s) 750
BstYI RGATCY 1 cut(s) 750
BsuI GTATCC 1 cut(s) 23
BsuRI GGCC 3 cut(s) 380, 524, 954
BtrI CACGTC 1 cut(s) 102
BtsCI GGATG 3 cut(s) 743, 880, 1000
BtsIMutI CAGTG 2 cut(s) 986, 1050
BveI ACCTGC 2 cut(s) 499, 544
Cac8I GCNNGC 3 cut(s) 448, 507, 952
CaiI CAGNNNCTG 1 cut(s) 1205
Cfr10I RCCGGY 1 cut(s) 520
Cfr13I GGNCC 2 cut(s) 258, 601
CseI GACGC 1 cut(s) 191
Csp6I GTAC 2 cut(s) 809, 889
CspCI CAANNNNNGTGG 2 cut(s) 634, 669
CviAII CATG 4 cut(s) 199, 734, 779, 1076
CviQI GTAC 2 cut(s) 809, 889
DdeI CTNAG 3 cut(s) 368, 465, 663
DpnI GATC 2 cut(s) 562, 752
DpnII GATC 2 cut(s) 560, 750
Eam1104I CTCTTC 1 cut(s) 795
EarI CTCTTC 1 cut(s) 795
EciI GGCGGA 1 cut(s) 1007
Eco130I CCWWGG 2 cut(s) 105, 254
Eco31I GGTCTC 1 cut(s) 329
Eco32I GATATC 2 cut(s) 343, 904
Eco47I GGWCC 2 cut(s) 258, 601
Eco88I CYCGRG 1 cut(s) 719
Eco91I GGTNACC 1 cut(s) 1139
EcoNI CCTNNNNNAGG 1 cut(s) 1029
EcoO109I RGGNCCY 1 cut(s) 258
EcoO65I GGTNACC 1 cut(s) 1139
EcoRI GAATTC 2 cut(s) 295, 710
EcoRII CCWGG 3 cut(s) 753, 829, 883
EcoRV GATATC 2 cut(s) 343, 904
EcoT14I CCWWGG 2 cut(s) 105, 254
EcoT22I ATGCAT 1 cut(s) 1000
ErhI CCWWGG 2 cut(s) 105, 254
FaeI CATG 4 cut(s) 202, 737, 782, 1079
FaqI GGGAC 1 cut(s) 971
FatI CATG 4 cut(s) 198, 733, 778, 1075
Fnu4HI GCNGC 6 cut(s) 390, 427, 451, 540, 827, 1009
FokI GGATG 3 cut(s) 750, 887, 1007
Fsp4HI GCNGC 6 cut(s) 390, 427, 451, 540, 827, 1009
FspBI CTAG 2 cut(s) 675, 762
GluI GCNGC 6 cut(s) 390, 427, 451, 540, 827, 1009
HaeIII GGCC 3 cut(s) 380, 524, 954
HapII CCGG 5 cut(s) 280, 521, 692, 783, 955
HgaI GACGC 1 cut(s) 191
Hin1II CATG 4 cut(s) 202, 737, 782, 1079
HindIII AAGCTT 2 cut(s) 704, 1115
HinfI GANTC 5 cut(s) 166, 370, 467, 982, 1048
HpaII CCGG 5 cut(s) 280, 521, 692, 783, 955
HphI GGTGA 5 cut(s) 480, 519, 525, 1049, 1151
Hpy188I TCNGA 9 cut(s) 8, 88, 334, 369, 466, 472, 595, 630, 666
Hpy188III TCNNGA 4 cut(s) 267, 374, 621, 913
Hpy99I CGWCG 3 cut(s) 207, 1064, 1190
HpyAV CCTTC 6 cut(s) 271, 540, 672, 857, 902, 1091
HpyCH4III ACNGT 1 cut(s) 1045
HpyCH4IV ACGT 2 cut(s) 101, 822
HpyCH4V TGCA 5 cut(s) 24, 240, 494, 826, 998
HpyF10VI GCNNNNNNNGC 4 cut(s) 237, 386, 435, 639
HpyF3I CTNAG 3 cut(s) 368, 465, 663
HpySE526I ACGT 2 cut(s) 101, 822
Hsp92II CATG 4 cut(s) 202, 737, 782, 1079
KpnI GGTACC 1 cut(s) 892
Kzo9I GATC 2 cut(s) 560, 750
LmnI GCTCC 4 cut(s) 282, 639, 724, 1027
Lsp1109I GCAGC 5 cut(s) 376, 438, 462, 838, 995
LweI GCATC 5 cut(s) 227, 503, 728, 940, 985
MaeI CTAG 2 cut(s) 675, 762
MaeII ACGT 2 cut(s) 101, 822
MaeIII GTNAC 2 cut(s) 757, 1139
MalI GATC 2 cut(s) 562, 752
MbiI CCGCTC 1 cut(s) 557
MboI GATC 2 cut(s) 560, 750
MboII GAAGA 6 cut(s) 246, 712, 757, 760, 812, 901
MflI RGATCY 1 cut(s) 750
MhlI GDGCHC 2 cut(s) 287, 644
MlyI GAGTC 3 cut(s) 379, 476, 1057
MmeI TCCRAC 3 cut(s) 450, 539, 815
Mph1103I ATGCAT 1 cut(s) 1000
MroXI GAANNNNTTC 1 cut(s) 211
MseI TTAA 2 cut(s) 1119, 1164
MslI CAYNNNNRTG 1 cut(s) 1080
MspI CCGG 5 cut(s) 280, 521, 692, 783, 955
MspR9I CCNGG 6 cut(s) 692, 755, 784, 831, 885, 956
Mva1269I GAATGC 3 cut(s) 70, 448, 1113
MvaI CCWGG 3 cut(s) 755, 831, 885
MwoI GCNNNNNNNGC 4 cut(s) 237, 386, 435, 639
NciI CCSGG 3 cut(s) 692, 784, 956
NdeII GATC 2 cut(s) 560, 750
NlaIII CATG 4 cut(s) 202, 737, 782, 1079
NlaIV GGNNCC 4 cut(s) 326, 603, 847, 890
NmuCI GTSAC 1 cut(s) 1139
NsiI ATGCAT 1 cut(s) 1000
NspV TTCGAA 1 cut(s) 861
PaeR7I CTCGAG 1 cut(s) 719
PaqCI CACCTGC 2 cut(s) 499, 544
PctI GAATGC 3 cut(s) 70, 448, 1113
PdmI GAANNNNTTC 1 cut(s) 211
PfeI GAWTC 2 cut(s) 166, 982
PflMI CCANNNNNTGG 1 cut(s) 158
PkrI GCNGC 6 cut(s) 391, 428, 452, 541, 828, 1010
Ple19I CGATCG 1 cut(s) 563
PleI GAGTC 3 cut(s) 378, 475, 1056
PpsI GAGTC 3 cut(s) 378, 475, 1056
PpuMI RGGWCCY 1 cut(s) 258
PshAI GACNNNNGTC 1 cut(s) 460
PsiI TTATAA 1 cut(s) 131
Psp5II RGGWCCY 1 cut(s) 258
Psp6I CCWGG 3 cut(s) 753, 829, 883
PspEI GGTNACC 1 cut(s) 1139
PspGI CCWGG 3 cut(s) 753, 829, 883
PspN4I GGNNCC 4 cut(s) 326, 603, 847, 890
PspPI GGNCC 2 cut(s) 258, 601
PspPPI RGGWCCY 1 cut(s) 258
PspXI VCTCGAGB 1 cut(s) 719
PsrI GAACNNNNNNTAC 2 cut(s) 838, 870
PstNI CAGNNNCTG 1 cut(s) 1205
PsuI RGATCY 1 cut(s) 750
PvuI CGATCG 1 cut(s) 563
RsaI GTAC 2 cut(s) 810, 890
RsaNI GTAC 2 cut(s) 809, 889
RseI CAYNNNNRTG 1 cut(s) 1080
SaqAI TTAA 2 cut(s) 1119, 1164
SatI GCNGC 6 cut(s) 390, 427, 451, 540, 827, 1009
Sau3AI GATC 2 cut(s) 560, 750
Sau96I GGNCC 2 cut(s) 258, 601
ScaI AGTACT 1 cut(s) 810
SchI GAGTC 3 cut(s) 379, 476, 1057
ScrFI CCNGG 6 cut(s) 692, 755, 784, 831, 885, 956
SduI GDGCHC 2 cut(s) 287, 644
SfaNI GCATC 5 cut(s) 227, 503, 728, 940, 985
Sfr274I CTCGAG 1 cut(s) 719
SfuI TTCGAA 1 cut(s) 861
SinI GGWCC 2 cut(s) 258, 601
SlaI CTCGAG 1 cut(s) 719
SmiMI CAYNNNNRTG 1 cut(s) 1080
SmlI CTYRAG 2 cut(s) 265, 719
SmoI CTYRAG 2 cut(s) 265, 719
SsiI CCGC 5 cut(s) 503, 540, 555, 992, 1147
SspI AATATT 1 cut(s) 19
SspMI CTAG 2 cut(s) 675, 762
StyD4I CCNGG 6 cut(s) 690, 753, 782, 829, 883, 954
StyI CCWWGG 2 cut(s) 105, 254
TaaI ACNGT 1 cut(s) 1045
TaiI ACGT 2 cut(s) 104, 825
TaqI TCGA 9 cut(s) 14, 80, 205, 215, 305, 559, 720, 861, 1059
TaqII GACCGA 1 cut(s) 353
TatI WGTACW 1 cut(s) 808
TauI GCSGC 1 cut(s) 542
TfiI GAWTC 2 cut(s) 166, 982
Tru1I TTAA 2 cut(s) 1119, 1164
Tru9I TTAA 2 cut(s) 1119, 1164
TscAI CASTG 2 cut(s) 993, 1050
TseFI GTSAC 1 cut(s) 1139
TseI GCWGC 5 cut(s) 389, 426, 450, 826, 1008
Tsp45I GTSAC 1 cut(s) 1139
TspDTI ATGAA 3 cut(s) 288, 936, 1098
TspGWI ACGGA 1 cut(s) 614
TspRI CASTG 2 cut(s) 993, 1050
Van91I CCANNNNNTGG 1 cut(s) 158
VpaK11BI GGWCC 2 cut(s) 258, 601
XagI CCTNNNNNAGG 1 cut(s) 1029
XapI RAATTY 2 cut(s) 295, 710
XhoI CTCGAG 1 cut(s) 719
XmnI GAANNNNTTC 1 cut(s) 211
XspI CTAG 2 cut(s) 675, 762
ZrmI AGTACT 1 cut(s) 810
Zsp2I ATGCAT 1 cut(s) 1000
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.