Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0015884

Physical Location & Seq

Genomic Coordinates Reverse (-)

52778971 .. 52780226

Gene Structure 1256 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1427300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGCTCGGAATATCGAATATCTGCAAAGGATACAAATCCTTTGTTATGAAATTGGCCCCCAACCATAAGCACGGAGACTCAAAGTTTGCAGACAATCATGACACCACCAAGGACGATGAAAATTTTACGATTAGTTACCCAACAACACCGGTAGGCGGGTTCGATAATCAACGAAGTATTGATGATAACTTCTTGCGCCGAAGTCTTTCAAGGACCTCGAGTAGAAGATGTAAGACACCGACACCGAGGAGCTTCTCAAGAAGTGCAAGCCGGAGCACCACTCCGACACCCTCGTCGTTGTCAAGAAATATGAGTCGAAGGAATGCCATGGAGACCGAAATTTCTGCTTCAGTTTCGAGAAATATGGGTCGAAGGAGCACTTCAGAGATGGAAATTCCTTCCCTTCTATCAAGAAATATGAGCCGGAGGCACCCTTTTGAGACTGAAATACATTCTCCATCACCCACCACAGCTTCAGCACCAGCCTCTCCAGCACCCGCTTCTCCATCACCCGCCTCTCCATCTCCAACCTCTCAAACGTCTAATGGCAGTAAATCAGGCACGTCTGATCAACCGGAGTCTTTATCAAGAAGTGTGAGCAAGAGGAGCACAACCCCGATTGTCTTCTCTCGGACAACTGCGAGAAAGAAACCTCGTCCGATTGAGAAGAAGCTTGCATTCACACTTGAAGAGTTGTGTCACGGATGCGTAAAGAAGATCAAGATCACAAGAGAAGTCATCAACAATGCTGGGTTTGTCACTAACATTGCTGACAATTTCTTACGTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001578 GO:0005575 GO:0005623 GO:0005929 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0031514 GO:0035082 GO:0036126 GO:0042995 GO:0043226 GO:0044085 GO:0044422 GO:0044441 GO:0044463 GO:0044464 GO:0044782 GO:0060271 GO:0070925 GO:0071840 GO:0097223 GO:0097224 GO:0097729 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1904158

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

264

Amino Acids

28.93

Weight (kDa)

10.47

Isoelectric Point (pI)

83.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015884)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11040
fragaria_vesca	FvH4_5g29110
malus_domestica	MD08G1235600.v1.1 MD15G1427300.v1.1
prunus_persica	Prupe.1G571300_v2.0.a1
pyrus_communis	pycom15g37880
rosa_chinensis	RchiOBHm_Chr7g0221771
rosa_laevigata	RLG00000002125
rosa_roxburghii	Rroxscaffold_3G00237740
rosa_rugosa	Rorug07G0203200
rosa_samantha	Rh7AG344100 Rh7BG334800 Rh7CG361500 Rh7DG341900
rosa_wichuraiana	Rw7G029180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	292
AccB1I	GGYRCC	1 cut(s)	429
AciI	CCGC	3 cut(s)	156, 498, 513
AcsI	RAATTY	3 cut(s)	121, 339, 393
AcuI	CTGAAG	3 cut(s)	333, 366, 459
AfiI	CCNNNNNNNGG	1 cut(s)	155
AgeI	ACCGGT	1 cut(s)	148
AgsI	TTSAA	2 cut(s)	210, 689
AjiI	CACGTC	1 cut(s)	564
AluBI	AGCT	3 cut(s)	252, 473, 673
AluI	AGCT	3 cut(s)	252, 473, 673
Alw21I	GWGCWC	3 cut(s)	278, 380, 611
Alw26I	GTCTC	3 cut(s)	69, 326, 434
Ama87I	CYCGRG	1 cut(s)	217
AoxI	GGCC	1 cut(s)	54
ApoI	RAATTY	3 cut(s)	121, 339, 393
ArsI	GACNNNNNNTTYG	2 cut(s)	68, 100
AsiGI	ACCGGT	1 cut(s)	148
Asp700I	GAANNNNTTC	1 cut(s)	205
AspLEI	GCGC	1 cut(s)	198
AspS9I	GGNCC	2 cut(s)	55, 213
AsuHPI	GGTGA	2 cut(s)	453, 501
AvaI	CYCGRG	1 cut(s)	217
AvaII	GGWCC	1 cut(s)	213
BanI	GGYRCC	1 cut(s)	429
BbsI	GAAGAC	1 cut(s)	616
Bbv12I	GWGCWC	3 cut(s)	278, 380, 611
BccI	CCATC	4 cut(s)	382, 466, 514, 529
BcgI	CGANNNNNNTGC	2 cut(s)	326, 360
BciVI	GTATCC	1 cut(s)	23
BclI	TGATCA	1 cut(s)	568
BcoDI	GTCTC	3 cut(s)	69, 326, 434
BfuI	GTATCC	1 cut(s)	23
Bme18I	GGWCC	1 cut(s)	213
BmeT110I	CYCGRG	1 cut(s)	217
BmgBI	CACGTC	1 cut(s)	564
BmgT120I	GGNCC	2 cut(s)	55, 213
BmiI	GGNNCC	2 cut(s)	57, 431
BmsI	GCATC	1 cut(s)	695
BpiI	GAAGAC	1 cut(s)	616
BplI	GAGNNNNNCTC	2 cut(s)	265, 297
BpmI	CTGGAG	1 cut(s)	474
BpuEI	CTTGAG	1 cut(s)	241
BsaAI	YACGTR	1 cut(s)	785
BsaBI	GATNNNNATC	2 cut(s)	34, 722
BsaI	GGTCTC	1 cut(s)	326
BsaJI	CCNNGG	3 cut(s)	108, 245, 327
BsaWI	WCCGGW	2 cut(s)	148, 574
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
Bse118I	RCCGGY	1 cut(s)	148
Bse3DI	GCAATG	1 cut(s)	765
Bse8I	GATNNNNATC	2 cut(s)	34, 722
BseDI	CCNNGG	3 cut(s)	108, 245, 327
BseGI	GGATG	1 cut(s)	710
BseJI	GATNNNNATC	2 cut(s)	34, 722
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseMI	GCAATG	1 cut(s)	765
BseRI	GAGGAG	2 cut(s)	262, 619
BseYI	CCCAGC	1 cut(s)	749
BshFI	GGCC	1 cut(s)	56
BshNI	GGYRCC	1 cut(s)	429
BshTI	ACCGGT	1 cut(s)	148
BsiHKAI	GWGCWC	3 cut(s)	278, 380, 611
BsiHKCI	CYCGRG	1 cut(s)	217
BsiSI	CCGG	4 cut(s)	149, 271, 424, 575
BslI	CCNNNNNNNGG	1 cut(s)	155
BsmAI	GTCTC	3 cut(s)	69, 326, 434
BsmI	GAATGC	2 cut(s)	328, 677
BsnI	GGCC	1 cut(s)	56
Bso31I	GGTCTC	1 cut(s)	326
BsoBI	CYCGRG	1 cut(s)	217
Bsp1286I	GDGCHC	3 cut(s)	278, 380, 611
Bsp143I	GATC	3 cut(s)	568, 717, 723
Bsp19I	CCATGG	1 cut(s)	327
BspACI	CCGC	3 cut(s)	156, 498, 513
BspANI	GGCC	1 cut(s)	56
BspHI	TCATGA	1 cut(s)	97
BspLI	GGNNCC	2 cut(s)	57, 431
BspT107I	GGYRCC	1 cut(s)	429
BspTNI	GGTCTC	1 cut(s)	326
BsrDI	GCAATG	1 cut(s)	765
BsrFI	RCCGGY	1 cut(s)	148
BssAI	RCCGGY	1 cut(s)	148
BssECI	CCNNGG	3 cut(s)	108, 245, 327
BssMI	GATC	3 cut(s)	568, 717, 723
BssT1I	CCWWGG	2 cut(s)	108, 327
Bst6I	CTCTTC	1 cut(s)	684
BstBAI	YACGTR	1 cut(s)	785
BstC8I	GCNNGC	2 cut(s)	268, 675
BstDSI	CCRYGG	1 cut(s)	327
BstF5I	GGATG	1 cut(s)	710
BstHHI	GCGC	1 cut(s)	198
BstKTI	GATC	3 cut(s)	571, 720, 726
BstMAI	GTCTC	3 cut(s)	69, 326, 434
BstMBI	GATC	3 cut(s)	568, 717, 723
BstMWI	GCNNNNNNNGC	2 cut(s)	491, 606
BstSNI	TACGTA	1 cut(s)	785
BstV2I	GAAGAC	1 cut(s)	616
BsuI	GTATCC	1 cut(s)	23
BsuRI	GGCC	1 cut(s)	56
BtgI	CCRYGG	1 cut(s)	327
BtrI	CACGTC	1 cut(s)	564
BtsCI	GGATG	1 cut(s)	710
Cac8I	GCNNGC	2 cut(s)	268, 675
CciI	TCATGA	1 cut(s)	97
CfoI	GCGC	1 cut(s)	198
Cfr10I	RCCGGY	1 cut(s)	148
Cfr13I	GGNCC	2 cut(s)	55, 213
CspAI	ACCGGT	1 cut(s)	148
CviAII	CATG	2 cut(s)	98, 328
CviJI	RGCY	7 cut(s)	56, 252, 270, 423, 473, 485, 673
CviKI_1	RGCY	7 cut(s)	56, 252, 270, 423, 473, 485, 673
DpnI	GATC	3 cut(s)	570, 719, 725
DpnII	GATC	3 cut(s)	568, 717, 723
DrdI	GACNNNNNNGTC	1 cut(s)	292
DseDI	GACNNNNNNGTC	1 cut(s)	292
Eam1104I	CTCTTC	1 cut(s)	684
EarI	CTCTTC	1 cut(s)	684
Eco105I	TACGTA	1 cut(s)	785
Eco130I	CCWWGG	2 cut(s)	108, 327
Eco31I	GGTCTC	1 cut(s)	326
Eco47I	GGWCC	1 cut(s)	213
Eco57I	CTGAAG	3 cut(s)	333, 366, 459
Eco88I	CYCGRG	1 cut(s)	217
EcoO109I	RGGNCCY	1 cut(s)	213
EcoT14I	CCWWGG	2 cut(s)	108, 327
ErhI	CCWWGG	2 cut(s)	108, 327
FaeI	CATG	2 cut(s)	101, 331
FaiI	YATR	7 cut(s)	47, 66, 99, 311, 329, 365, 419
FalI	AAGNNNNNCTT	2 cut(s)	364, 396
FatI	CATG	2 cut(s)	97, 327
FauI	CCCGC	3 cut(s)	149, 505, 520
FbaI	TGATCA	1 cut(s)	568
FokI	GGATG	1 cut(s)	717
GlaI	GCGC	1 cut(s)	197
GsaI	CCCAGC	1 cut(s)	753
GsuI	CTGGAG	1 cut(s)	474
HaeIII	GGCC	1 cut(s)	56
HapII	CCGG	4 cut(s)	149, 271, 424, 575
HhaI	GCGC	1 cut(s)	198
Hin1II	CATG	2 cut(s)	101, 331
Hin6I	GCGC	1 cut(s)	196
HinP1I	GCGC	1 cut(s)	196
HindIII	AAGCTT	1 cut(s)	671
HinfI	GANTC	3 cut(s)	77, 313, 578
HpaII	CCGG	4 cut(s)	149, 271, 424, 575
HphI	GGTGA	2 cut(s)	453, 501
Hpy188I	TCNGA	6 cut(s)	8, 285, 385, 568, 633, 660
Hpy188III	TCNNGA	7 cut(s)	98, 258, 303, 357, 411, 588, 721
Hpy99I	CGWCG	1 cut(s)	298
HpyAV	CCTTC	4 cut(s)	312, 366, 408, 413
HpyCH4IV	ACGT	3 cut(s)	539, 563, 784
HpyCH4V	TGCA	4 cut(s)	24, 89, 266, 677
HpyF10VI	GCNNNNNNNGC	2 cut(s)	491, 606
HpySE526I	ACGT	3 cut(s)	539, 563, 784
Hsp92II	CATG	2 cut(s)	101, 331
HspAI	GCGC	1 cut(s)	196
Ksp22I	TGATCA	1 cut(s)	568
Kzo9I	GATC	3 cut(s)	568, 717, 723
LmnI	GCTCC	4 cut(s)	249, 273, 375, 606
LpnPI	CCDG	8 cut(s)	162, 284, 437, 495, 504, 543, 588, 735
LweI	GCATC	1 cut(s)	695
MaeII	ACGT	3 cut(s)	539, 563, 784
MaeIII	GTNAC	3 cut(s)	134, 698, 757
MalI	GATC	3 cut(s)	570, 719, 725
MboI	GATC	3 cut(s)	568, 717, 723
MboII	GAAGA	5 cut(s)	237, 616, 679, 701, 727
MhlI	GDGCHC	3 cut(s)	278, 380, 611
MluCI	AATT	6 cut(s)	50, 121, 339, 393, 775, 787
MlyI	GAGTC	3 cut(s)	71, 322, 587
MmeI	TCCRAC	2 cut(s)	308, 551
MnlI	CCTC	9 cut(s)	226, 240, 301, 420, 496, 526, 541, 597, 663
MroXI	GAANNNNTTC	1 cut(s)	205
MseI	TTAA	1 cut(s)	790
MspI	CCGG	4 cut(s)	149, 271, 424, 575
Mva1269I	GAATGC	2 cut(s)	328, 677
MwoI	GCNNNNNNNGC	2 cut(s)	491, 606
NcoI	CCATGG	1 cut(s)	327
NdeII	GATC	3 cut(s)	568, 717, 723
NlaIII	CATG	2 cut(s)	101, 331
NlaIV	GGNNCC	2 cut(s)	57, 431
NmuCI	GTSAC	2 cut(s)	698, 757
PaeR7I	CTCGAG	1 cut(s)	217
PagI	TCATGA	1 cut(s)	97
PctI	GAATGC	2 cut(s)	328, 677
PdmI	GAANNNNTTC	1 cut(s)	205
PinAI	ACCGGT	1 cut(s)	148
PleI	GAGTC	3 cut(s)	71, 321, 586
PpsI	GAGTC	3 cut(s)	71, 321, 586
Ppu21I	YACGTR	1 cut(s)	785
PpuMI	RGGWCCY	1 cut(s)	213
Psp5II	RGGWCCY	1 cut(s)	213
PspFI	CCCAGC	1 cut(s)	749
PspN4I	GGNNCC	2 cut(s)	57, 431
PspPI	GGNCC	2 cut(s)	55, 213
PspPPI	RGGWCCY	1 cut(s)	213
PspXI	VCTCGAGB	1 cut(s)	217
SaqAI	TTAA	1 cut(s)	790
Sau3AI	GATC	3 cut(s)	568, 717, 723
Sau96I	GGNCC	2 cut(s)	55, 213
SchI	GAGTC	3 cut(s)	71, 322, 587
SduI	GDGCHC	3 cut(s)	278, 380, 611
SetI	ASST	9 cut(s)	218, 254, 475, 533, 542, 566, 655, 675, 787
SfaNI	GCATC	1 cut(s)	695
Sfr274I	CTCGAG	1 cut(s)	217
SinI	GGWCC	1 cut(s)	213
SlaI	CTCGAG	1 cut(s)	217
SmlI	CTYRAG	2 cut(s)	217, 256
SmoI	CTYRAG	2 cut(s)	217, 256
SnaBI	TACGTA	1 cut(s)	785
Sse9I	AATT	6 cut(s)	50, 121, 339, 393, 775, 787
SsiI	CCGC	3 cut(s)	156, 498, 513
StyI	CCWWGG	2 cut(s)	108, 327
TaiI	ACGT	3 cut(s)	542, 566, 787
TaqI	TCGA	6 cut(s)	14, 162, 218, 316, 356, 370
TaqII	GACCGA	1 cut(s)	350
TasI	AATT	6 cut(s)	50, 121, 339, 393, 775, 787
Tru1I	TTAA	1 cut(s)	790
Tru9I	TTAA	1 cut(s)	790
TseFI	GTSAC	2 cut(s)	698, 757
Tsp45I	GTSAC	2 cut(s)	698, 757
TspDTI	ATGAA	2 cut(s)	62, 132
TspGWI	ACGGA	2 cut(s)	87, 717
VpaK11BI	GGWCC	1 cut(s)	213
XapI	RAATTY	3 cut(s)	121, 339, 393
XhoI	CTCGAG	1 cut(s)	217
XmnI	GAANNNNTTC	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.