AT1G11120

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011151
Physical Location & Seq
Forward (+)
3715084 .. 3717659
2576 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G11120.2

Sequence Viewer

Length: 564 bp
ATGAGAGACCTTGAGCACTTAAAGACGAACCTCAACCATCAATGGCCACCTATCGGAGCTCCGATGAATCTCCGGCGAGAAGAGCCGTGGAAATCTCAGTTCGATGACTCAGTTAACGCTGTCTCCTTTGGATTCGTCGCAACGGCTATTCTCATCTCTATGTTCCTCGTCATGGCTATCTTCGAGAGACTCATTCGTACAACCACTACTTCAACTACTAACTCAGATTCCTCTTCAAGTCGGGTCCTTCCGGGTATGGATTCTCGGGTCGGGTTTAACGGTGCTGCTACTAAACTCGGTTATCAATCTCCCAAGGCAAGTAATAACAGAATTGTGTTTTCTTTTTCGTTTAACATTTTAAAGAGTGAATTATTCATTGTCATAATCTTGAGGATGACTGTTTACTCAAACGGGGTATCTGTATTGATGCCAGGAGATGATATCCCTACGTTCATTGCTCATCCAGCTCCCGTGCCTTGTCCTCCTCAAAACATCTCACAGTCTCAGCATCAACATGGCTCATCAAAGGATTCCTCCAGCTCAAACTCCATTCAAGAATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

187

Amino Acids

20.61

Weight (kDa)

7.86

Isoelectric Point (pI)

56.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11120 AT1G11120
fragaria_vesca FvH4_3g04540 FvH4_6g10290
malus_domestica MD05G1181400.v1.1 MD05G1322600.v1.1 MD14G1018300.v1.1
prunus_persica Prupe.4G040100_v2.0.a1
pyrus_communis pycom05g29680 pycom10g25330
rosa_chinensis RchiOBHm_Chr5g0007461
rosa_laevigata RLG00000031458
rosa_multiflora Rmu_ssc0000182.1_g000001
rosa_roxburghii Rroxscaffold_1G00068930
rosa_rugosa Rorug04G0427000
rosa_samantha Rh5AG055400 Rh5BG053000 Rh5CG062800 Rh5DG052000
rosa_wichuraiana Rw5G005470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 44
AfaI GTAC 1 cut(s) 199
AfiI CCNNNNNNNGG 2 cut(s) 53, 172
AgsI TTSAA 3 cut(s) 213, 237, 554
AjnI CCWGG 1 cut(s) 430
AluBI AGCT 3 cut(s) 59, 467, 540
AluI AGCT 3 cut(s) 59, 467, 540
Alw21I GWGCWC 2 cut(s) 18, 61
Alw26I GTCTC 3 cut(s) 127, 181, 507
Ama87I CYCGRG 1 cut(s) 264
AoxI GGCC 1 cut(s) 44
ApeKI GCWGC 1 cut(s) 284
AspS9I GGNCC 1 cut(s) 244
AsuC2I CCSGG 1 cut(s) 252
AvaI CYCGRG 1 cut(s) 264
AvaII GGWCC 1 cut(s) 244
BalI TGGCCA 1 cut(s) 46
BanII GRGCYC 1 cut(s) 61
Bbv12I GWGCWC 2 cut(s) 18, 61
BbvI GCAGC 1 cut(s) 271
BccI CCATC 1 cut(s) 45
BceAI ACGGC 2 cut(s) 70, 159
BciT130I CCWGG 1 cut(s) 432
BcnI CCSGG 1 cut(s) 252
BcoDI GTCTC 3 cut(s) 127, 181, 507
BisI GCNGC 1 cut(s) 285
BlsI GCNGC 1 cut(s) 286
Bme1390I CCNGG 2 cut(s) 252, 432
Bme18I GGWCC 1 cut(s) 244
BmeT110I CYCGRG 1 cut(s) 264
BmgT120I GGNCC 1 cut(s) 244
BmiI GGNNCC 1 cut(s) 245
BmrFI CCNGG 2 cut(s) 252, 432
BmsI GCATC 2 cut(s) 417, 517
BpmI CTGGAG 1 cut(s) 520
BpuEI CTTGAG 2 cut(s) 32, 409
BpuMI CCSGG 1 cut(s) 252
BsaJI CCNNGG 2 cut(s) 86, 312
BsaXI ACNNNNNCTCC 2 cut(s) 107, 137
Bsc4I CCNNNNNNNGG 2 cut(s) 53, 172
Bse3DI GCAATG 1 cut(s) 453
BseBI CCWGG 1 cut(s) 432
BseDI CCNNGG 2 cut(s) 86, 312
BseGI GGATG 2 cut(s) 399, 460
BseLI CCNNNNNNNGG 2 cut(s) 53, 172
BseMI GCAATG 1 cut(s) 453
BseMII CTCAG 4 cut(s) 110, 123, 237, 518
BseRI GAGGAG 1 cut(s) 474
BseXI GCAGC 1 cut(s) 271
BshFI GGCC 1 cut(s) 46
BsiHKAI GWGCWC 2 cut(s) 18, 61
BsiHKCI CYCGRG 1 cut(s) 264
BsiSI CCGG 2 cut(s) 73, 251
BslI CCNNNNNNNGG 2 cut(s) 53, 172
BsmAI GTCTC 3 cut(s) 127, 181, 507
BsnI GGCC 1 cut(s) 46
BsoBI CYCGRG 1 cut(s) 264
Bsp1286I GDGCHC 2 cut(s) 18, 61
BspANI GGCC 1 cut(s) 46
BspCNI CTCAG 4 cut(s) 109, 122, 236, 517
BspLI GGNNCC 1 cut(s) 245
BspQI GCTCTTC 1 cut(s) 75
BsrDI GCAATG 1 cut(s) 453
BssECI CCNNGG 2 cut(s) 86, 312
BssT1I CCWWGG 1 cut(s) 312
Bst2UI CCWGG 1 cut(s) 432
Bst4CI ACNGT 3 cut(s) 281, 400, 501
Bst6I CTCTTC 2 cut(s) 75, 238
BstDEI CTNAG 4 cut(s) 96, 109, 223, 504
BstDSI CCRYGG 1 cut(s) 86
BstF5I GGATG 2 cut(s) 399, 460
BstMAI GTCTC 3 cut(s) 127, 181, 507
BstMWI GCNNNNNNNGC 2 cut(s) 82, 464
BstNI CCWGG 1 cut(s) 432
BstSCI CCNGG 2 cut(s) 250, 430
BstV1I GCAGC 1 cut(s) 271
BsuRI GGCC 1 cut(s) 46
BtgI CCRYGG 1 cut(s) 86
BtsCI GGATG 2 cut(s) 399, 460
Cfr13I GGNCC 1 cut(s) 244
Csp6I GTAC 1 cut(s) 198
CviAII CATG 2 cut(s) 172, 515
CviJI RGCY 8 cut(s) 46, 59, 85, 146, 176, 467, 519, 540
CviKI_1 RGCY 8 cut(s) 46, 59, 85, 146, 176, 467, 519, 540
CviQI GTAC 1 cut(s) 198
DdeI CTNAG 4 cut(s) 96, 109, 223, 504
DraI TTTAAA 1 cut(s) 360
EaeI YGGCCR 1 cut(s) 44
Eam1104I CTCTTC 2 cut(s) 75, 238
EarI CTCTTC 2 cut(s) 75, 238
Ecl136II GAGCTC 1 cut(s) 59
Eco130I CCWWGG 1 cut(s) 312
Eco24I GRGCYC 1 cut(s) 61
Eco32I GATATC 1 cut(s) 442
Eco47I GGWCC 1 cut(s) 244
Eco53kI GAGCTC 1 cut(s) 59
Eco88I CYCGRG 1 cut(s) 264
EcoICRI GAGCTC 1 cut(s) 59
EcoO109I RGGNCCY 1 cut(s) 244
EcoRII CCWGG 1 cut(s) 430
EcoRV GATATC 1 cut(s) 442
EcoT14I CCWWGG 1 cut(s) 312
EcoT38I GRGCYC 1 cut(s) 61
ErhI CCWWGG 1 cut(s) 312
FaeI CATG 2 cut(s) 175, 518
FaiI YATR 5 cut(s) 161, 173, 257, 383, 516
FatI CATG 2 cut(s) 171, 514
Fnu4HI GCNGC 1 cut(s) 285
FokI GGATG 2 cut(s) 406, 447
FriOI GRGCYC 1 cut(s) 61
Fsp4HI GCNGC 1 cut(s) 285
GluI GCNGC 1 cut(s) 285
GsuI CTGGAG 1 cut(s) 520
HaeIII GGCC 1 cut(s) 46
HapII CCGG 2 cut(s) 73, 251
Hin1II CATG 2 cut(s) 175, 518
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HinfI GANTC 7 cut(s) 67, 107, 132, 189, 227, 260, 530
HpaI GTTAAC 1 cut(s) 115
HpaII CCGG 2 cut(s) 73, 251
Hpy166II GTNNAC 2 cut(s) 115, 403
Hpy188I TCNGA 3 cut(s) 56, 63, 226
Hpy188III TCNNGA 3 cut(s) 184, 388, 554
Hpy8I GTNNAC 2 cut(s) 115, 403
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 1 cut(s) 257
HpyCH4III ACNGT 3 cut(s) 281, 400, 501
HpyCH4IV ACGT 1 cut(s) 449
HpyF10VI GCNNNNNNNGC 2 cut(s) 82, 464
HpyF3I CTNAG 4 cut(s) 96, 109, 223, 504
HpySE526I ACGT 1 cut(s) 449
Hsp92II CATG 2 cut(s) 175, 518
KspAI GTTAAC 1 cut(s) 115
LguI GCTCTTC 1 cut(s) 75
LmnI GCTCC 3 cut(s) 56, 64, 472
LpnPI CCDG 6 cut(s) 86, 264, 417, 444, 477, 550
Lsp1109I GCAGC 1 cut(s) 271
LweI GCATC 2 cut(s) 417, 517
MaeII ACGT 1 cut(s) 449
MboII GAAGA 3 cut(s) 92, 172, 225
MhlI GDGCHC 2 cut(s) 18, 61
MlsI TGGCCA 1 cut(s) 46
MluCI AATT 2 cut(s) 330, 368
MluNI TGGCCA 1 cut(s) 46
MlyI GAGTC 2 cut(s) 101, 183
MnlI CCTC 7 cut(s) 41, 176, 241, 384, 492, 495, 544
Mox20I TGGCCA 1 cut(s) 46
MscI TGGCCA 1 cut(s) 46
MseI TTAA 5 cut(s) 20, 114, 276, 351, 359
MslI CAYNNNNRTG 2 cut(s) 158, 513
Msp20I TGGCCA 1 cut(s) 46
MspI CCGG 2 cut(s) 73, 251
MspR9I CCNGG 2 cut(s) 252, 432
MvaI CCWGG 1 cut(s) 432
MwoI GCNNNNNNNGC 2 cut(s) 82, 464
NciI CCSGG 1 cut(s) 252
NlaIII CATG 2 cut(s) 175, 518
NlaIV GGNNCC 1 cut(s) 245
PciSI GCTCTTC 1 cut(s) 75
PfeI GAWTC 5 cut(s) 67, 132, 227, 260, 530
PkrI GCNGC 1 cut(s) 286
PleI GAGTC 2 cut(s) 101, 183
PpsI GAGTC 2 cut(s) 101, 183
PpuMI RGGWCCY 1 cut(s) 244
Psp124BI GAGCTC 1 cut(s) 61
Psp5II RGGWCCY 1 cut(s) 244
Psp6I CCWGG 1 cut(s) 430
PspGI CCWGG 1 cut(s) 430
PspN4I GGNNCC 1 cut(s) 245
PspPI GGNCC 1 cut(s) 244
PspPPI RGGWCCY 1 cut(s) 244
RsaI GTAC 1 cut(s) 199
RsaNI GTAC 1 cut(s) 198
RseI CAYNNNNRTG 2 cut(s) 158, 513
SacI GAGCTC 1 cut(s) 61
SapI GCTCTTC 1 cut(s) 75
SaqAI TTAA 5 cut(s) 20, 114, 276, 351, 359
SatI GCNGC 1 cut(s) 285
Sau96I GGNCC 1 cut(s) 244
SchI GAGTC 2 cut(s) 101, 183
ScrFI CCNGG 2 cut(s) 252, 432
SduI GDGCHC 2 cut(s) 18, 61
SetI ASST 7 cut(s) 12, 33, 52, 61, 452, 469, 542
SfaNI GCATC 2 cut(s) 417, 517
SinI GGWCC 1 cut(s) 244
SmiMI CAYNNNNRTG 2 cut(s) 158, 513
SmlI CTYRAG 2 cut(s) 11, 388
SmoI CTYRAG 2 cut(s) 11, 388
Sse9I AATT 2 cut(s) 330, 368
SstI GAGCTC 1 cut(s) 61
StyD4I CCNGG 2 cut(s) 250, 430
StyI CCWWGG 1 cut(s) 312
TaaI ACNGT 3 cut(s) 281, 400, 501
TaiI ACGT 1 cut(s) 452
TaqI TCGA 2 cut(s) 102, 183
TasI AATT 2 cut(s) 330, 368
TfiI GAWTC 5 cut(s) 67, 132, 227, 260, 530
Tru1I TTAA 5 cut(s) 20, 114, 276, 351, 359
Tru9I TTAA 5 cut(s) 20, 114, 276, 351, 359
TseI GCWGC 1 cut(s) 284
TspDTI ATGAA 3 cut(s) 80, 364, 442
VpaK11BI GGWCC 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.