Rh5DG052000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0011151
Physical Location & Seq
Reverse (-)
4436722 .. 4439454
2733 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG052000.1

Sequence Viewer

Length: 462 bp
ATGGTTGGGCAAGAACATAGCTTCCAGTGGCCTCCAATTGGAGCACCACTAAATAATATGCAGCAGCAGCAGAGAGATGAGCATATGAGTCCCTTTAATTCTTCAGTCAATGCGGTGTCGTTTGGTTTTGTAGCCACTGCCATTCTCATCTCCATGTTCTTAGTCATGGCCATCTTTGAAAGATTCCTCAGACCCACATCGCCGGATTTCTCGCCGTCCGGCCGCCGGAGAAGTGGAGATCTTGAGGCCCAGTTGGAGTTTAATGGAAAACTTGGTTACCCATCACCCAAAATGTCTGTGTATGCAAGTGGAGTTTCTGTTTTGATGCCTGGAGATGACATTCCGTCCTACATTGCACACCCAGCACCAGTGCCTTGCCCTCCCGAACGCATGTTTTGGCCTCCACACCTACACATTTCATTGCCCAATCCCGCCACCAACTCGAGCCTGAGCTCAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

16.78

Weight (kDa)

6.16

Isoelectric Point (pI)

71.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11120 AT1G11120
fragaria_vesca FvH4_3g04540 FvH4_6g10290
malus_domestica MD05G1181400.v1.1 MD05G1322600.v1.1 MD14G1018300.v1.1
prunus_persica Prupe.4G040100_v2.0.a1
pyrus_communis pycom05g29680 pycom10g25330
rosa_chinensis RchiOBHm_Chr5g0007461
rosa_laevigata RLG00000031458
rosa_multiflora Rmu_ssc0000182.1_g000001
rosa_roxburghii Rroxscaffold_1G00068930
rosa_rugosa Rorug04G0427000
rosa_samantha Rh5AG055400 Rh5BG053000 Rh5CG062800 Rh5DG052000
rosa_wichuraiana Rw5G005470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 113, 223, 432
AcoI YGGCCR 2 cut(s) 168, 220
AcuI CTGAAG 1 cut(s) 87
AfiI CCNNNNNNNGG 2 cut(s) 38, 225
AgsI TTSAA 1 cut(s) 179
AhdI GACNNNNNGTC 1 cut(s) 343
AjnI CCWGG 1 cut(s) 328
AloI GAACNNNNNNTCC 1 cut(s) 38
AluBI AGCT 2 cut(s) 21, 453
AluI AGCT 2 cut(s) 21, 453
Alw21I GWGCWC 2 cut(s) 46, 455
Ama87I CYCGRG 1 cut(s) 442
AoxI GGCC 5 cut(s) 29, 168, 220, 246, 398
ApeKI GCWGC 3 cut(s) 61, 64, 67
AspS9I GGNCC 1 cut(s) 247
AsuHPI GGTGA 1 cut(s) 276
AvaI CYCGRG 1 cut(s) 442
BalI TGGCCA 1 cut(s) 170
BanII GRGCYC 1 cut(s) 455
Bbv12I GWGCWC 2 cut(s) 46, 455
BbvI GCAGC 3 cut(s) 73, 76, 79
BccI CCATC 2 cut(s) 179, 289
BceAI ACGGC 1 cut(s) 199
BciT130I CCWGG 1 cut(s) 330
BglII AGATCT 1 cut(s) 238
BisI GCNGC 4 cut(s) 62, 65, 68, 223
BlsI GCNGC 4 cut(s) 63, 66, 69, 224
Bme1390I CCNGG 1 cut(s) 330
BmeRI GACNNNNNGTC 1 cut(s) 343
BmeT110I CYCGRG 1 cut(s) 442
BmgT120I GGNCC 1 cut(s) 247
BmrFI CCNGG 1 cut(s) 330
BmrI ACTGGG 1 cut(s) 244
BmsI GCATC 1 cut(s) 315
BmuI ACTGGG 1 cut(s) 244
BpmI CTGGAG 1 cut(s) 351
Bpu10I CCTNAGC 2 cut(s) 449, 454
BpuEI CTTGAG 1 cut(s) 263
BsaXI ACNNNNNCTCC 2 cut(s) 303, 333
Bsc4I CCNNNNNNNGG 2 cut(s) 38, 225
Bse1I ACTGG 3 cut(s) 25, 250, 368
Bse3DI GCAATG 2 cut(s) 351, 419
BseBI CCWGG 1 cut(s) 330
BseLI CCNNNNNNNGG 2 cut(s) 38, 225
BseMI GCAATG 2 cut(s) 351, 419
BseMII CTCAG 2 cut(s) 202, 440
BseNI ACTGG 3 cut(s) 25, 250, 368
BseX3I CGGCCG 1 cut(s) 220
BseXI GCAGC 3 cut(s) 73, 76, 79
BseYI CCCAGC 1 cut(s) 361
Bsh1285I CGRYCG 1 cut(s) 223
BshFI GGCC 5 cut(s) 31, 170, 222, 248, 400
BsiEI CGRYCG 1 cut(s) 223
BsiHKAI GWGCWC 2 cut(s) 46, 455
BsiHKCI CYCGRG 1 cut(s) 442
BsiSI CCGG 3 cut(s) 203, 219, 226
BslFI GGGAC 1 cut(s) 75
BslI CCNNNNNNNGG 2 cut(s) 38, 225
BsmFI GGGAC 1 cut(s) 75
BsnI GGCC 5 cut(s) 31, 170, 222, 248, 400
BsoBI CYCGRG 1 cut(s) 442
Bsp1286I GDGCHC 2 cut(s) 46, 455
Bsp143I GATC 1 cut(s) 238
BspACI CCGC 3 cut(s) 113, 223, 432
BspANI GGCC 5 cut(s) 31, 170, 222, 248, 400
BspCNI CTCAG 2 cut(s) 201, 441
BsrDI GCAATG 2 cut(s) 351, 419
BsrI ACTGG 3 cut(s) 25, 250, 368
BssMI GATC 1 cut(s) 238
Bst2UI CCWGG 1 cut(s) 330
BstDEI CTNAG 4 cut(s) 160, 188, 449, 454
BstEII GGTNACC 1 cut(s) 275
BstKTI GATC 1 cut(s) 241
BstMBI GATC 1 cut(s) 238
BstMCI CGRYCG 1 cut(s) 223
BstMWI GCNNNNNNNGC 2 cut(s) 67, 362
BstNI CCWGG 1 cut(s) 330
BstNSI RCATGY 1 cut(s) 394
BstPI GGTNACC 1 cut(s) 275
BstSCI CCNGG 1 cut(s) 328
BstV1I GCAGC 3 cut(s) 73, 76, 79
BstX2I RGATCY 1 cut(s) 238
BstYI RGATCY 1 cut(s) 238
BstZI CGGCCG 1 cut(s) 220
BsuRI GGCC 5 cut(s) 31, 170, 222, 248, 400
BtgZI GCGATG 1 cut(s) 183
BtsI GCAGTG 1 cut(s) 135
BtsIMutI CAGTG 3 cut(s) 32, 135, 375
Cfr13I GGNCC 1 cut(s) 247
CviAII CATG 3 cut(s) 154, 166, 391
CviJI RGCY 9 cut(s) 21, 31, 134, 170, 222, 248, 400, 447, 453
CviKI_1 RGCY 9 cut(s) 21, 31, 134, 170, 222, 248, 400, 447, 453
DdeI CTNAG 4 cut(s) 160, 188, 449, 454
DpnI GATC 1 cut(s) 240
DpnII GATC 1 cut(s) 238
DriI GACNNNNNGTC 1 cut(s) 343
EaeI YGGCCR 2 cut(s) 168, 220
EagI CGGCCG 1 cut(s) 220
Eam1105I GACNNNNNGTC 1 cut(s) 343
Ecl136II GAGCTC 1 cut(s) 453
EclXI CGGCCG 1 cut(s) 220
Eco24I GRGCYC 1 cut(s) 455
Eco52I CGGCCG 1 cut(s) 220
Eco53kI GAGCTC 1 cut(s) 453
Eco57I CTGAAG 1 cut(s) 87
Eco88I CYCGRG 1 cut(s) 442
Eco91I GGTNACC 1 cut(s) 275
EcoICRI GAGCTC 1 cut(s) 453
EcoO65I GGTNACC 1 cut(s) 275
EcoRII CCWGG 1 cut(s) 328
EcoT38I GRGCYC 1 cut(s) 455
FaeI CATG 3 cut(s) 157, 169, 394
FaiI YATR 8 cut(s) 18, 59, 84, 86, 155, 167, 303, 392
FaqI GGGAC 1 cut(s) 75
FatI CATG 3 cut(s) 153, 165, 390
FauI CCCGC 1 cut(s) 439
FauNDI CATATG 1 cut(s) 84
Fnu4HI GCNGC 4 cut(s) 62, 65, 68, 223
FriOI GRGCYC 1 cut(s) 455
Fsp4HI GCNGC 4 cut(s) 62, 65, 68, 223
GluI GCNGC 4 cut(s) 62, 65, 68, 223
GsaI CCCAGC 1 cut(s) 365
GsuI CTGGAG 1 cut(s) 351
HaeIII GGCC 5 cut(s) 31, 170, 222, 248, 400
HapII CCGG 3 cut(s) 203, 219, 226
Hin1II CATG 3 cut(s) 157, 169, 394
HinfI GANTC 2 cut(s) 88, 183
HpaII CCGG 3 cut(s) 203, 219, 226
HphI GGTGA 1 cut(s) 276
Hpy188I TCNGA 1 cut(s) 191
Hpy188III TCNNGA 2 cut(s) 242, 383
HpyCH4V TGCA 3 cut(s) 61, 305, 356
HpyF10VI GCNNNNNNNGC 2 cut(s) 67, 362
HpyF3I CTNAG 4 cut(s) 160, 188, 449, 454
Hsp92II CATG 3 cut(s) 157, 169, 394
Kzo9I GATC 1 cut(s) 238
LmnI GCTCC 1 cut(s) 41
Lsp1109I GCAGC 3 cut(s) 73, 76, 79
LweI GCATC 1 cut(s) 315
MaeIII GTNAC 1 cut(s) 275
MalI GATC 1 cut(s) 240
MboI GATC 1 cut(s) 238
MboII GAAGA 1 cut(s) 93
MfeI CAATTG 1 cut(s) 36
MflI RGATCY 1 cut(s) 238
MhlI GDGCHC 2 cut(s) 46, 455
MlsI TGGCCA 1 cut(s) 170
MluCI AATT 2 cut(s) 36, 97
MluNI TGGCCA 1 cut(s) 170
MlyI GAGTC 1 cut(s) 97
MmeI TCCRAC 1 cut(s) 234
MnlI CCTC 5 cut(s) 42, 197, 238, 390, 411
Mox20I TGGCCA 1 cut(s) 170
MscI TGGCCA 1 cut(s) 170
MseI TTAA 2 cut(s) 96, 261
MslI CAYNNNNRTG 1 cut(s) 152
Msp20I TGGCCA 1 cut(s) 170
MspI CCGG 3 cut(s) 203, 219, 226
MspR9I CCNGG 1 cut(s) 330
MunI CAATTG 1 cut(s) 36
MvaI CCWGG 1 cut(s) 330
MwoI GCNNNNNNNGC 2 cut(s) 67, 362
NdeI CATATG 1 cut(s) 84
NdeII GATC 1 cut(s) 238
NlaIII CATG 3 cut(s) 157, 169, 394
NspI RCATGY 1 cut(s) 394
PaeR7I CTCGAG 1 cut(s) 442
PfeI GAWTC 1 cut(s) 183
PkrI GCNGC 4 cut(s) 63, 66, 69, 224
PleI GAGTC 1 cut(s) 96
PpsI GAGTC 1 cut(s) 96
Psp124BI GAGCTC 1 cut(s) 455
Psp6I CCWGG 1 cut(s) 328
PspEI GGTNACC 1 cut(s) 275
PspFI CCCAGC 1 cut(s) 361
PspGI CCWGG 1 cut(s) 328
PspPI GGNCC 1 cut(s) 247
PspXI VCTCGAGB 1 cut(s) 442
PsuI RGATCY 1 cut(s) 238
RseI CAYNNNNRTG 1 cut(s) 152
SacI GAGCTC 1 cut(s) 455
SaqAI TTAA 2 cut(s) 96, 261
SatI GCNGC 4 cut(s) 62, 65, 68, 223
Sau3AI GATC 1 cut(s) 238
Sau96I GGNCC 1 cut(s) 247
SchI GAGTC 1 cut(s) 97
ScrFI CCNGG 1 cut(s) 330
SduI GDGCHC 2 cut(s) 46, 455
SetI ASST 4 cut(s) 23, 411, 455, 460
SfaNI GCATC 1 cut(s) 315
Sfr274I CTCGAG 1 cut(s) 442
SlaI CTCGAG 1 cut(s) 442
SmiMI CAYNNNNRTG 1 cut(s) 152
SmlI CTYRAG 2 cut(s) 242, 442
SmoI CTYRAG 2 cut(s) 242, 442
Sse9I AATT 2 cut(s) 36, 97
SsiI CCGC 3 cut(s) 113, 223, 432
SstI GAGCTC 1 cut(s) 455
StyD4I CCNGG 1 cut(s) 328
TaqI TCGA 1 cut(s) 443
TasI AATT 2 cut(s) 36, 97
TauI GCSGC 1 cut(s) 225
TfiI GAWTC 1 cut(s) 183
Tru1I TTAA 2 cut(s) 96, 261
Tru9I TTAA 2 cut(s) 96, 261
TscAI CASTG 3 cut(s) 32, 142, 375
TseI GCWGC 3 cut(s) 61, 64, 67
TspDTI ATGAA 1 cut(s) 408
TspGWI ACGGA 1 cut(s) 333
TspRI CASTG 3 cut(s) 32, 142, 375
XceI RCATGY 1 cut(s) 394
XhoI CTCGAG 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.