Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0011151

Physical Location & Seq

Genomic Coordinates Reverse (-)

1719049 .. 1719480

Gene Structure 432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1018300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGTGGGACCCACCCCTTATCCCACTCATCCTTTCTTCCCCGTTCCTGTCTTCCCCAAACCCAAAACCAAATCCCCCCATACTCAGATCCCATCCGTGCAGTCCTCCTCCTCCTCATTCCCCTGCCTTCAACAACTCTGTCAATGCGGTATCTTTTGGGTTCGTAGCCACTGCCATTCTCATCTCCATGTTCTTAGTCATGGCCATCTTCGAGAGGTTCCTCAGACCCACCTCGTCGGACTTGTCGCCTTTTGGCCGCCTTGGCCCCAGAGATCTTGAGGCCCATATGGGTTTCAATGGAAAACTCAGCCACCCTTCACCAAAAGTAAGTAACCCACCCAGTGGCGAAGCCAGAATTCTGAATGAAGAGGGGTCTTTCACAAATATGTATATATATATATATATGACTGTGTGTAAAAAGTTGAATTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

144

Amino Acids

15.71

Weight (kDa)

9.1

Isoelectric Point (pI)

59.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011151)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11120 AT1G11120
fragaria_vesca	FvH4_3g04540 FvH4_6g10290
malus_domestica	MD05G1181400.v1.1 MD05G1322600.v1.1 MD14G1018300.v1.1
prunus_persica	Prupe.4G040100_v2.0.a1
pyrus_communis	pycom05g29680 pycom10g25330
rosa_chinensis	RchiOBHm_Chr5g0007461
rosa_laevigata	RLG00000031458
rosa_multiflora	Rmu_ssc0000182.1_g000001
rosa_roxburghii	Rroxscaffold_1G00068930
rosa_rugosa	Rorug04G0427000
rosa_samantha	Rh5AG055400 Rh5BG053000 Rh5CG062800 Rh5DG052000
rosa_wichuraiana	Rw5G005470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	341
AciI	CCGC	2 cut(s)	146, 256
AclWI	GGATC	1 cut(s)	81
AcoI	YGGCCR	2 cut(s)	201, 253
AcsI	RAATTY	2 cut(s)	354, 424
AdeI	CACNNNGTG	1 cut(s)	341
AfiI	CCNNNNNNNGG	1 cut(s)	341
AgsI	TTSAA	3 cut(s)	130, 295, 424
AlwI	GGATC	1 cut(s)	81
AoxI	GGCC	4 cut(s)	201, 253, 262, 279
ApoI	RAATTY	2 cut(s)	354, 424
AspS9I	GGNCC	3 cut(s)	7, 263, 280
AsuHPI	GGTGA	1 cut(s)	309
AvaII	GGWCC	1 cut(s)	7
BalI	TGGCCA	1 cut(s)	203
BbsI	GAAGAC	1 cut(s)	42
BccI	CCATC	2 cut(s)	99, 212
BglI	GCCNNNNNGGC	1 cut(s)	261
BglII	AGATCT	1 cut(s)	271
BisI	GCNGC	1 cut(s)	256
BlsI	GCNGC	1 cut(s)	257
Bme18I	GGWCC	1 cut(s)	7
BmgT120I	GGNCC	3 cut(s)	7, 263, 280
BmiI	GGNNCC	4 cut(s)	8, 9, 218, 265
BmrI	ACTGGG	1 cut(s)	333
BmuI	ACTGGG	1 cut(s)	333
BpiI	GAAGAC	1 cut(s)	42
BpuEI	CTTGAG	1 cut(s)	296
BsaJI	CCNNGG	1 cut(s)	259
Bsc4I	CCNNNNNNNGG	1 cut(s)	341
Bse1I	ACTGG	1 cut(s)	339
BseDI	CCNNGG	1 cut(s)	259
BseGI	GGATG	2 cut(s)	27, 91
BseLI	CCNNNNNNNGG	1 cut(s)	341
BseMII	CTCAG	3 cut(s)	97, 235, 319
BseNI	ACTGG	1 cut(s)	339
BseRI	GAGGAG	3 cut(s)	96, 99, 102
BsgI	GTGCAG	1 cut(s)	118
BshFI	GGCC	4 cut(s)	203, 255, 264, 281
BslFI	GGGAC	1 cut(s)	20
BslI	CCNNNNNNNGG	1 cut(s)	341
BsmFI	GGGAC	1 cut(s)	20
BsnI	GGCC	4 cut(s)	203, 255, 264, 281
Bsp143I	GATC	2 cut(s)	86, 271
BspACI	CCGC	2 cut(s)	146, 256
BspANI	GGCC	4 cut(s)	203, 255, 264, 281
BspCNI	CTCAG	3 cut(s)	96, 234, 318
BspLI	GGNNCC	4 cut(s)	8, 9, 218, 265
BspPI	GGATC	1 cut(s)	81
BsrI	ACTGG	1 cut(s)	339
BssECI	CCNNGG	1 cut(s)	259
BssMI	GATC	2 cut(s)	86, 271
BssT1I	CCWWGG	1 cut(s)	259
Bst4CI	ACNGT	1 cut(s)	409
Bst6I	CTCTTC	1 cut(s)	360
BstDEI	CTNAG	4 cut(s)	83, 193, 221, 305
BstF5I	GGATG	2 cut(s)	27, 91
BstKTI	GATC	2 cut(s)	89, 274
BstMBI	GATC	2 cut(s)	86, 271
BstMWI	GCNNNNNNNGC	1 cut(s)	261
BstV2I	GAAGAC	1 cut(s)	42
BstX2I	RGATCY	2 cut(s)	86, 271
BstYI	RGATCY	2 cut(s)	86, 271
BsuRI	GGCC	4 cut(s)	203, 255, 264, 281
BtsCI	GGATG	2 cut(s)	27, 91
BtsI	GCAGTG	1 cut(s)	168
BtsIMutI	CAGTG	2 cut(s)	168, 346
Cfr13I	GGNCC	3 cut(s)	7, 263, 280
CviAII	CATG	2 cut(s)	187, 199
CviJI	RGCY	7 cut(s)	167, 203, 255, 264, 281, 309, 350
CviKI_1	RGCY	7 cut(s)	167, 203, 255, 264, 281, 309, 350
DdeI	CTNAG	4 cut(s)	83, 193, 221, 305
DpnI	GATC	2 cut(s)	88, 273
DpnII	GATC	2 cut(s)	86, 271
DraIII	CACNNNGTG	1 cut(s)	341
EaeI	YGGCCR	2 cut(s)	201, 253
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
Eco130I	CCWWGG	1 cut(s)	259
Eco47I	GGWCC	1 cut(s)	7
EcoO109I	RGGNCCY	1 cut(s)	7
EcoRI	GAATTC	2 cut(s)	354, 424
EcoT14I	CCWWGG	1 cut(s)	259
ErhI	CCWWGG	1 cut(s)	259
FaeI	CATG	2 cut(s)	190, 202
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	2 cut(s)	186, 198
FauNDI	CATATG	1 cut(s)	285
Fnu4HI	GCNGC	1 cut(s)	256
FokI	GGATG	2 cut(s)	14, 78
Fsp4HI	GCNGC	1 cut(s)	256
GluI	GCNGC	1 cut(s)	256
HaeIII	GGCC	4 cut(s)	203, 255, 264, 281
Hin1II	CATG	2 cut(s)	190, 202
HphI	GGTGA	1 cut(s)	309
Hpy188I	TCNGA	4 cut(s)	86, 224, 238, 360
Hpy188III	TCNNGA	2 cut(s)	211, 275
Hpy99I	CGWCG	1 cut(s)	238
HpyAV	CCTTC	2 cut(s)	136, 324
HpyCH4III	ACNGT	1 cut(s)	409
HpyCH4V	TGCA	1 cut(s)	99
HpyF10VI	GCNNNNNNNGC	1 cut(s)	261
HpyF3I	CTNAG	4 cut(s)	83, 193, 221, 305
Hsp92II	CATG	2 cut(s)	190, 202
KflI	GGGWCCC	1 cut(s)	7
Kzo9I	GATC	2 cut(s)	86, 271
LpnPI	CCDG	5 cut(s)	59, 135, 280, 352, 364
MaeIII	GTNAC	1 cut(s)	329
MalI	GATC	2 cut(s)	88, 273
MboI	GATC	2 cut(s)	86, 271
MboII	GAAGA	4 cut(s)	27, 42, 199, 377
MflI	RGATCY	2 cut(s)	86, 271
MlsI	TGGCCA	1 cut(s)	203
MluCI	AATT	2 cut(s)	354, 424
MluNI	TGGCCA	1 cut(s)	203
MmeI	TCCRAC	1 cut(s)	216
MnlI	CCTC	9 cut(s)	114, 117, 120, 123, 207, 230, 241, 271, 361
Mox20I	TGGCCA	1 cut(s)	203
MscI	TGGCCA	1 cut(s)	203
MslI	CAYNNNNRTG	2 cut(s)	185, 383
Msp20I	TGGCCA	1 cut(s)	203
MwoI	GCNNNNNNNGC	1 cut(s)	261
NdeI	CATATG	1 cut(s)	285
NdeII	GATC	2 cut(s)	86, 271
NlaIII	CATG	2 cut(s)	190, 202
NlaIV	GGNNCC	4 cut(s)	8, 9, 218, 265
PflMI	CCANNNNNTGG	1 cut(s)	341
PkrI	GCNGC	1 cut(s)	257
PpuMI	RGGWCCY	1 cut(s)	7
Psp5II	RGGWCCY	1 cut(s)	7
PspN4I	GGNNCC	4 cut(s)	8, 9, 218, 265
PspPI	GGNCC	3 cut(s)	7, 263, 280
PspPPI	RGGWCCY	1 cut(s)	7
PsuI	RGATCY	2 cut(s)	86, 271
RseI	CAYNNNNRTG	2 cut(s)	185, 383
SatI	GCNGC	1 cut(s)	256
Sau3AI	GATC	2 cut(s)	86, 271
Sau96I	GGNCC	3 cut(s)	7, 263, 280
SetI	ASST	2 cut(s)	218, 233
SfiI	GGCCNNNNNGGCC	1 cut(s)	261
SinI	GGWCC	1 cut(s)	7
SmiMI	CAYNNNNRTG	2 cut(s)	185, 383
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	2 cut(s)	354, 424
SsiI	CCGC	2 cut(s)	146, 256
StyI	CCWWGG	1 cut(s)	259
TaaI	ACNGT	1 cut(s)	409
TaqI	TCGA	1 cut(s)	210
TasI	AATT	2 cut(s)	354, 424
TauI	GCSGC	1 cut(s)	258
TscAI	CASTG	2 cut(s)	175, 346
TspDTI	ATGAA	2 cut(s)	378, 417
TspGWI	ACGGA	1 cut(s)	84
TspRI	CASTG	2 cut(s)	175, 346
Van91I	CCANNNNNTGG	1 cut(s)	341
VpaK11BI	GGWCC	1 cut(s)	7
XapI	RAATTY	2 cut(s)	354, 424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.