FvH4_3g04540

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0011151
Physical Location & Seq
Reverse (-)
2597499 .. 2599924
2426 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g04540.t1

Sequence Viewer

Length: 459 bp
ATGGCTGTGCAAGAACACAGCTTTCAGTGGCCTCCAATTGGAGCTCCACTAAATAACATGCAGCAGCAGAGAGATGAGCCTGTGAGTCCCTTTAATTCTTCAGCCAATGCGTTGTCATTTGGTTTCGTAGCCACTGCTGTGCTCATCTCCATGTTCATAGTCATGGCCATCTTTGAGAGATTCCTCAGACCCTCTTCGCCGGAATTTTCGCCGTCCGGCCGCCGGAGAAATGGAGATCTTGAGTCCCAGTTGGAGTTTAACGGAAAACTTGGTCACCCATCACCCGAAATGTCTGTGTATGCAAGTGGAGTTTCTGTTTTAATGCCTGGAGATGATATTCCATCCTACATTGCACACCCAGTGCCGGTGCCCTGCCCTCCCGAACGCATGTTTTGGCCTCCACATCAACACATGTCATTGCCTAGTCACACTGCCAACTCGAACCAGAGCTCAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

16.7

Weight (kDa)

5.79

Isoelectric Point (pI)

75.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11120 AT1G11120
fragaria_vesca FvH4_3g04540 FvH4_6g10290
malus_domestica MD05G1181400.v1.1 MD05G1322600.v1.1 MD14G1018300.v1.1
prunus_persica Prupe.4G040100_v2.0.a1
pyrus_communis pycom05g29680 pycom10g25330
rosa_chinensis RchiOBHm_Chr5g0007461
rosa_laevigata RLG00000031458
rosa_multiflora Rmu_ssc0000182.1_g000001
rosa_roxburghii Rroxscaffold_1G00068930
rosa_rugosa Rorug04G0427000
rosa_samantha Rh5AG055400 Rh5BG053000 Rh5CG062800 Rh5DG052000
rosa_wichuraiana Rw5G005470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 367
AciI CCGC 1 cut(s) 220
AcoI YGGCCR 2 cut(s) 165, 217
AcsI RAATTY 1 cut(s) 203
AcuI CTGAAG 1 cut(s) 84
AdeI CACNNNGTG 1 cut(s) 361
AfiI CCNNNNNNNGG 3 cut(s) 38, 222, 364
AflIII ACRYGT 1 cut(s) 411
AjnI CCWGG 1 cut(s) 325
AleI CACNNNNGTG 1 cut(s) 137
AluBI AGCT 3 cut(s) 21, 44, 450
AluI AGCT 3 cut(s) 21, 44, 450
Alw21I GWGCWC 3 cut(s) 46, 144, 452
AoxI GGCC 4 cut(s) 29, 165, 217, 395
ApeKI GCWGC 2 cut(s) 61, 64
ApoI RAATTY 1 cut(s) 203
AsuHPI GGTGA 2 cut(s) 266, 273
BaeGI GKGCMC 1 cut(s) 372
BalI TGGCCA 1 cut(s) 167
BanI GGYRCC 1 cut(s) 367
BanII GRGCYC 2 cut(s) 46, 452
Bbv12I GWGCWC 3 cut(s) 46, 144, 452
BbvI GCAGC 2 cut(s) 73, 76
BccI CCATC 3 cut(s) 176, 286, 349
BceAI ACGGC 1 cut(s) 196
BciT130I CCWGG 1 cut(s) 327
BfaI CTAG 1 cut(s) 423
BglII AGATCT 1 cut(s) 235
BisI GCNGC 3 cut(s) 62, 65, 220
BlsI GCNGC 3 cut(s) 63, 66, 221
Bme1390I CCNGG 1 cut(s) 327
BmiI GGNNCC 1 cut(s) 369
BmrFI CCNGG 1 cut(s) 327
BmrI ACTGGG 2 cut(s) 241, 353
BmuI ACTGGG 2 cut(s) 241, 353
BpmI CTGGAG 1 cut(s) 348
Bpu10I CCTNAGC 1 cut(s) 451
BpuEI CTTGAG 1 cut(s) 260
BsaXI ACNNNNNCTCC 2 cut(s) 300, 330
Bsc4I CCNNNNNNNGG 3 cut(s) 38, 222, 364
Bse118I RCCGGY 1 cut(s) 364
Bse1I ACTGG 2 cut(s) 247, 359
Bse3DI GCAATG 2 cut(s) 348, 416
BseBI CCWGG 1 cut(s) 327
BseGI GGATG 1 cut(s) 341
BseLI CCNNNNNNNGG 3 cut(s) 38, 222, 364
BseMI GCAATG 2 cut(s) 348, 416
BseMII CTCAG 1 cut(s) 199
BseNI ACTGG 2 cut(s) 247, 359
BseSI GKGCMC 1 cut(s) 372
BseX3I CGGCCG 1 cut(s) 217
BseXI GCAGC 2 cut(s) 73, 76
Bsh1285I CGRYCG 1 cut(s) 220
BshFI GGCC 4 cut(s) 31, 167, 219, 397
BshNI GGYRCC 1 cut(s) 367
BsiEI CGRYCG 1 cut(s) 220
BsiHKAI GWGCWC 3 cut(s) 46, 144, 452
BsiSI CCGG 4 cut(s) 200, 216, 223, 365
BslFI GGGAC 2 cut(s) 72, 229
BslI CCNNNNNNNGG 3 cut(s) 38, 222, 364
BsmFI GGGAC 2 cut(s) 72, 229
BsnI GGCC 4 cut(s) 31, 167, 219, 397
Bsp1286I GDGCHC 4 cut(s) 46, 144, 372, 452
Bsp143I GATC 1 cut(s) 235
BspACI CCGC 1 cut(s) 220
BspANI GGCC 4 cut(s) 31, 167, 219, 397
BspCNI CTCAG 1 cut(s) 198
BspLI GGNNCC 1 cut(s) 369
BspT107I GGYRCC 1 cut(s) 367
BsrDI GCAATG 2 cut(s) 348, 416
BsrFI RCCGGY 1 cut(s) 364
BsrI ACTGG 2 cut(s) 247, 359
BssAI RCCGGY 1 cut(s) 364
BssMI GATC 1 cut(s) 235
Bst2UI CCWGG 1 cut(s) 327
Bst6I CTCTTC 1 cut(s) 199
BstDEI CTNAG 2 cut(s) 185, 451
BstEII GGTNACC 1 cut(s) 272
BstF5I GGATG 1 cut(s) 341
BstKTI GATC 1 cut(s) 238
BstMBI GATC 1 cut(s) 235
BstMCI CGRYCG 1 cut(s) 220
BstNI CCWGG 1 cut(s) 327
BstNSI RCATGY 3 cut(s) 61, 391, 415
BstPI GGTNACC 1 cut(s) 272
BstSCI CCNGG 1 cut(s) 325
BstSLI GKGCMC 1 cut(s) 372
BstV1I GCAGC 2 cut(s) 73, 76
BstX2I RGATCY 1 cut(s) 235
BstYI RGATCY 1 cut(s) 235
BstZI CGGCCG 1 cut(s) 217
BsuRI GGCC 4 cut(s) 31, 167, 219, 397
BtsCI GGATG 1 cut(s) 341
BtsI GCAGTG 2 cut(s) 132, 429
BtsIMutI CAGTG 4 cut(s) 32, 132, 366, 429
Cfr10I RCCGGY 1 cut(s) 364
CviAII CATG 5 cut(s) 58, 151, 163, 388, 412
DdeI CTNAG 2 cut(s) 185, 451
DpnI GATC 1 cut(s) 237
DpnII GATC 1 cut(s) 235
DraIII CACNNNGTG 1 cut(s) 361
EaeI YGGCCR 2 cut(s) 165, 217
EagI CGGCCG 1 cut(s) 217
Eam1104I CTCTTC 1 cut(s) 199
EarI CTCTTC 1 cut(s) 199
Ecl136II GAGCTC 2 cut(s) 44, 450
EclXI CGGCCG 1 cut(s) 217
Eco24I GRGCYC 2 cut(s) 46, 452
Eco52I CGGCCG 1 cut(s) 217
Eco53kI GAGCTC 2 cut(s) 44, 450
Eco57I CTGAAG 1 cut(s) 84
Eco91I GGTNACC 1 cut(s) 272
EcoICRI GAGCTC 2 cut(s) 44, 450
EcoO65I GGTNACC 1 cut(s) 272
EcoRII CCWGG 1 cut(s) 325
EcoT38I GRGCYC 2 cut(s) 46, 452
FaeI CATG 5 cut(s) 61, 154, 166, 391, 415
FaiI YATR 7 cut(s) 59, 152, 158, 164, 300, 389, 413
FaqI GGGAC 2 cut(s) 72, 229
FatI CATG 5 cut(s) 57, 150, 162, 387, 411
Fnu4HI GCNGC 3 cut(s) 62, 65, 220
FokI GGATG 1 cut(s) 328
FriOI GRGCYC 2 cut(s) 46, 452
Fsp4HI GCNGC 3 cut(s) 62, 65, 220
FspBI CTAG 1 cut(s) 423
GluI GCNGC 3 cut(s) 62, 65, 220
GsuI CTGGAG 1 cut(s) 348
HaeIII GGCC 4 cut(s) 31, 167, 219, 397
HapII CCGG 4 cut(s) 200, 216, 223, 365
Hin1II CATG 5 cut(s) 61, 154, 166, 391, 415
HinfI GANTC 3 cut(s) 85, 180, 242
HpaII CCGG 4 cut(s) 200, 216, 223, 365
HphI GGTGA 2 cut(s) 266, 273
Hpy188I TCNGA 1 cut(s) 188
Hpy188III TCNNGA 2 cut(s) 239, 380
HpyCH4V TGCA 4 cut(s) 10, 61, 302, 353
HpyF3I CTNAG 2 cut(s) 185, 451
Hsp92II CATG 5 cut(s) 61, 154, 166, 391, 415
Kzo9I GATC 1 cut(s) 235
LmnI GCTCC 2 cut(s) 41, 49
Lsp1109I GCAGC 2 cut(s) 73, 76
MaeI CTAG 1 cut(s) 423
MaeIII GTNAC 2 cut(s) 272, 425
MalI GATC 1 cut(s) 237
MboI GATC 1 cut(s) 235
MboII GAAGA 2 cut(s) 90, 186
MfeI CAATTG 1 cut(s) 36
MflI RGATCY 1 cut(s) 235
MhlI GDGCHC 4 cut(s) 46, 144, 372, 452
MlsI TGGCCA 1 cut(s) 167
MluCI AATT 3 cut(s) 36, 94, 203
MluNI TGGCCA 1 cut(s) 167
MlyI GAGTC 2 cut(s) 94, 251
MmeI TCCRAC 1 cut(s) 231
MnlI CCTC 5 cut(s) 42, 194, 202, 387, 408
Mox20I TGGCCA 1 cut(s) 167
MscI TGGCCA 1 cut(s) 167
MseI TTAA 3 cut(s) 93, 258, 320
MslI CAYNNNNRTG 3 cut(s) 137, 149, 161
Msp20I TGGCCA 1 cut(s) 167
MspI CCGG 4 cut(s) 200, 216, 223, 365
MspR9I CCNGG 1 cut(s) 327
MunI CAATTG 1 cut(s) 36
MvaI CCWGG 1 cut(s) 327
NdeII GATC 1 cut(s) 235
NlaIII CATG 5 cut(s) 61, 154, 166, 391, 415
NlaIV GGNNCC 1 cut(s) 369
NmuCI GTSAC 2 cut(s) 272, 425
NspI RCATGY 3 cut(s) 61, 391, 415
OliI CACNNNNGTG 1 cut(s) 137
PciI ACATGT 1 cut(s) 411
PfeI GAWTC 1 cut(s) 180
PkrI GCNGC 3 cut(s) 63, 66, 221
PleI GAGTC 2 cut(s) 93, 250
PpsI GAGTC 2 cut(s) 93, 250
PscI ACATGT 1 cut(s) 411
Psp124BI GAGCTC 2 cut(s) 46, 452
Psp6I CCWGG 1 cut(s) 325
PspEI GGTNACC 1 cut(s) 272
PspGI CCWGG 1 cut(s) 325
PspN4I GGNNCC 1 cut(s) 369
PsuI RGATCY 1 cut(s) 235
RseI CAYNNNNRTG 3 cut(s) 137, 149, 161
SacI GAGCTC 2 cut(s) 46, 452
SaqAI TTAA 3 cut(s) 93, 258, 320
SatI GCNGC 3 cut(s) 62, 65, 220
Sau3AI GATC 1 cut(s) 235
SchI GAGTC 2 cut(s) 94, 251
ScrFI CCNGG 1 cut(s) 327
SduI GDGCHC 4 cut(s) 46, 144, 372, 452
SetI ASST 4 cut(s) 23, 46, 452, 457
SmiMI CAYNNNNRTG 3 cut(s) 137, 149, 161
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
Sse9I AATT 3 cut(s) 36, 94, 203
SsiI CCGC 1 cut(s) 220
SspMI CTAG 1 cut(s) 423
SstI GAGCTC 2 cut(s) 46, 452
StyD4I CCNGG 1 cut(s) 325
TaqI TCGA 1 cut(s) 440
TasI AATT 3 cut(s) 36, 94, 203
TauI GCSGC 1 cut(s) 222
TfiI GAWTC 1 cut(s) 180
Tru1I TTAA 3 cut(s) 93, 258, 320
Tru9I TTAA 3 cut(s) 93, 258, 320
TscAI CASTG 4 cut(s) 32, 139, 366, 436
TseFI GTSAC 2 cut(s) 272, 425
TseI GCWGC 2 cut(s) 61, 64
Tsp45I GTSAC 2 cut(s) 272, 425
TspDTI ATGAA 1 cut(s) 145
TspGWI ACGGA 1 cut(s) 276
TspRI CASTG 4 cut(s) 32, 139, 366, 436
XapI RAATTY 1 cut(s) 203
XceI RCATGY 3 cut(s) 61, 391, 415
XspI CTAG 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.