pycom05g29680

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0011151
Physical Location & Seq
Forward (+)
30064034 .. 30067197
3164 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g29680.1

Sequence Viewer

Length: 483 bp
ATGAGAATGCTTGTCGTGAAAGAAGATAGCTTTCAATGGCCGCCAATAGGAGCTCCACTAAACATGCAGAGAGAAGACCATCCGTGCAGTCCTCCTCCTCCTCCTCCTTCCCCTGCCTTCAACAGCTCTGTCAATGCGGTGTCTTTTGGCTTCGTAGCCACTGCCATTCTCATCTCCATGTTCTTAGTCATGGCCATCTTCGAGAGGTTCCTCAGACCCACCTCGCCTGACTTGTCGCCGTCTGGCCGCCGTGGTCCCGGAGATCTTGAGGCCCAGATGGGTATCAATGGAAAACTCAGCCACCCTTCACCAAAAATGACTGTGTATGCCAGTGGAGTTTCAGTGTTGATGCCTGGAGACGATATCCCCACCTTCATTGCACACCCAGCCCCCGTGCCGCGCCTCCCAGAACACGTTTTTTTACCTCAACATCAACACATTTCATTGCCGAACCCCCCACCTCAACCTCCGCCTCGAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

17.35

Weight (kDa)

7.02

Isoelectric Point (pI)

68.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11120 AT1G11120
fragaria_vesca FvH4_3g04540 FvH4_6g10290
malus_domestica MD05G1181400.v1.1 MD05G1322600.v1.1 MD14G1018300.v1.1
prunus_persica Prupe.4G040100_v2.0.a1
pyrus_communis pycom05g29680 pycom10g25330
rosa_chinensis RchiOBHm_Chr5g0007461
rosa_laevigata RLG00000031458
rosa_multiflora Rmu_ssc0000182.1_g000001
rosa_roxburghii Rroxscaffold_1G00068930
rosa_rugosa Rorug04G0427000
rosa_samantha Rh5AG055400 Rh5BG053000 Rh5CG062800 Rh5DG052000
rosa_wichuraiana Rw5G005470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 400
AciI CCGC 5 cut(s) 41, 137, 247, 398, 470
AcoI YGGCCR 3 cut(s) 38, 192, 244
AfiI CCNNNNNNNGG 1 cut(s) 47
AflIII ACRYGT 1 cut(s) 412
AgsI TTSAA 2 cut(s) 35, 121
AjnI CCWGG 1 cut(s) 352
AluBI AGCT 3 cut(s) 30, 53, 126
AluI AGCT 3 cut(s) 30, 53, 126
Alw21I GWGCWC 1 cut(s) 55
Alw26I GTCTC 1 cut(s) 351
Ama87I CYCGRG 1 cut(s) 474
AoxI GGCC 4 cut(s) 38, 192, 244, 270
AspLEI GCGC 1 cut(s) 402
AspS9I GGNCC 2 cut(s) 254, 271
AsuC2I CCSGG 1 cut(s) 258
AsuHPI GGTGA 1 cut(s) 300
AvaI CYCGRG 1 cut(s) 474
AvaII GGWCC 1 cut(s) 254
BalI TGGCCA 1 cut(s) 194
BanII GRGCYC 1 cut(s) 55
BbsI GAAGAC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 55
BccI CCATC 3 cut(s) 87, 203, 271
BceAI ACGGC 2 cut(s) 223, 234
BciT130I CCWGG 1 cut(s) 354
BcnI CCSGG 1 cut(s) 258
BcoDI GTCTC 1 cut(s) 351
BglII AGATCT 1 cut(s) 262
BisI GCNGC 3 cut(s) 41, 247, 398
BlsI GCNGC 3 cut(s) 42, 248, 399
Bme1390I CCNGG 2 cut(s) 258, 354
Bme18I GGWCC 1 cut(s) 254
BmeT110I CYCGRG 1 cut(s) 474
BmgT120I GGNCC 2 cut(s) 254, 271
BmiI GGNNCC 2 cut(s) 209, 256
BmrFI CCNGG 2 cut(s) 258, 354
BmsI GCATC 1 cut(s) 339
BpiI GAAGAC 1 cut(s) 81
BpmI CTGGAG 1 cut(s) 375
BpuEI CTTGAG 1 cut(s) 287
BpuMI CCSGG 1 cut(s) 258
BsaBI GATNNNNATC 1 cut(s) 281
BsaJI CCNNGG 1 cut(s) 250
BsaXI ACNNNNNCTCC 2 cut(s) 327, 357
Bsc4I CCNNNNNNNGG 1 cut(s) 47
Bse1I ACTGG 1 cut(s) 330
Bse3DI GCAATG 2 cut(s) 375, 443
Bse8I GATNNNNATC 1 cut(s) 281
BseBI CCWGG 1 cut(s) 354
BseDI CCNNGG 1 cut(s) 250
BseGI GGATG 1 cut(s) 79
BseJI GATNNNNATC 1 cut(s) 281
BseLI CCNNNNNNNGG 1 cut(s) 47
BseMI GCAATG 2 cut(s) 375, 443
BseMII CTCAG 2 cut(s) 226, 310
BseNI ACTGG 1 cut(s) 330
BseRI GAGGAG 4 cut(s) 84, 87, 90, 93
BseYI CCCAGC 1 cut(s) 385
BsgI GTGCAG 1 cut(s) 106
Bsh1236I CGCG 1 cut(s) 400
BshFI GGCC 4 cut(s) 40, 194, 246, 272
BsiHKAI GWGCWC 1 cut(s) 55
BsiHKCI CYCGRG 1 cut(s) 474
BsiSI CCGG 1 cut(s) 258
BslFI GGGAC 1 cut(s) 240
BslI CCNNNNNNNGG 1 cut(s) 47
BsmAI GTCTC 1 cut(s) 351
BsmBI CGTCTC 1 cut(s) 351
BsmFI GGGAC 1 cut(s) 240
BsmI GAATGC 1 cut(s) 12
BsnI GGCC 4 cut(s) 40, 194, 246, 272
BsoBI CYCGRG 1 cut(s) 474
Bsp1286I GDGCHC 1 cut(s) 55
Bsp143I GATC 1 cut(s) 262
BspACI CCGC 5 cut(s) 41, 137, 247, 398, 470
BspANI GGCC 4 cut(s) 40, 194, 246, 272
BspCNI CTCAG 2 cut(s) 225, 309
BspFNI CGCG 1 cut(s) 400
BspLI GGNNCC 2 cut(s) 209, 256
BsrDI GCAATG 2 cut(s) 375, 443
BsrI ACTGG 1 cut(s) 330
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 1 cut(s) 262
Bst2UI CCWGG 1 cut(s) 354
Bst4CI ACNGT 1 cut(s) 322
BstDEI CTNAG 3 cut(s) 184, 212, 296
BstDSI CCRYGG 1 cut(s) 250
BstF5I GGATG 1 cut(s) 79
BstFNI CGCG 1 cut(s) 400
BstHHI GCGC 1 cut(s) 402
BstKTI GATC 1 cut(s) 265
BstMAI GTCTC 1 cut(s) 351
BstMBI GATC 1 cut(s) 262
BstMWI GCNNNNNNNGC 1 cut(s) 386
BstNI CCWGG 1 cut(s) 354
BstNSI RCATGY 1 cut(s) 67
BstSCI CCNGG 2 cut(s) 256, 352
BstUI CGCG 1 cut(s) 400
BstV2I GAAGAC 1 cut(s) 81
BstX2I RGATCY 1 cut(s) 262
BstYI RGATCY 1 cut(s) 262
BsuRI GGCC 4 cut(s) 40, 194, 246, 272
BtgI CCRYGG 1 cut(s) 250
BtsCI GGATG 1 cut(s) 79
BtsI GCAGTG 1 cut(s) 159
BtsIMutI CAGTG 3 cut(s) 159, 337, 348
CfoI GCGC 1 cut(s) 402
Cfr13I GGNCC 2 cut(s) 254, 271
CspCI CAANNNNNGTGG 2 cut(s) 358, 393
CviAII CATG 3 cut(s) 64, 178, 190
DdeI CTNAG 3 cut(s) 184, 212, 296
DpnI GATC 1 cut(s) 264
DpnII GATC 1 cut(s) 262
EaeI YGGCCR 3 cut(s) 38, 192, 244
EciI GGCGGA 1 cut(s) 459
Ecl136II GAGCTC 1 cut(s) 53
Eco24I GRGCYC 1 cut(s) 55
Eco32I GATATC 1 cut(s) 364
Eco47I GGWCC 1 cut(s) 254
Eco53kI GAGCTC 1 cut(s) 53
Eco88I CYCGRG 1 cut(s) 474
EcoICRI GAGCTC 1 cut(s) 53
EcoRII CCWGG 1 cut(s) 352
EcoRV GATATC 1 cut(s) 364
EcoT38I GRGCYC 1 cut(s) 55
Esp3I CGTCTC 1 cut(s) 351
FaeI CATG 3 cut(s) 67, 181, 193
FaiI YATR 5 cut(s) 65, 179, 191, 327, 481
FaqI GGGAC 1 cut(s) 240
FatI CATG 3 cut(s) 63, 177, 189
Fnu4HI GCNGC 3 cut(s) 41, 247, 398
FokI GGATG 1 cut(s) 66
FriOI GRGCYC 1 cut(s) 55
Fsp4HI GCNGC 3 cut(s) 41, 247, 398
GlaI GCGC 1 cut(s) 401
GluI GCNGC 3 cut(s) 41, 247, 398
GsaI CCCAGC 1 cut(s) 389
GsuI CTGGAG 1 cut(s) 375
HaeIII GGCC 4 cut(s) 40, 194, 246, 272
HapII CCGG 1 cut(s) 258
HhaI GCGC 1 cut(s) 402
Hin1II CATG 3 cut(s) 67, 181, 193
Hin6I GCGC 1 cut(s) 400
HinP1I GCGC 1 cut(s) 400
HpaII CCGG 1 cut(s) 258
HphI GGTGA 1 cut(s) 300
Hpy188I TCNGA 1 cut(s) 215
Hpy188III TCNNGA 3 cut(s) 16, 202, 266
HpyAV CCTTC 4 cut(s) 117, 127, 315, 382
HpyCH4III ACNGT 1 cut(s) 322
HpyCH4IV ACGT 1 cut(s) 414
HpyCH4V TGCA 3 cut(s) 67, 87, 380
HpyF10VI GCNNNNNNNGC 1 cut(s) 386
HpyF3I CTNAG 3 cut(s) 184, 212, 296
HpySE526I ACGT 1 cut(s) 414
Hsp92II CATG 3 cut(s) 67, 181, 193
HspAI GCGC 1 cut(s) 400
Kzo9I GATC 1 cut(s) 262
LmnI GCTCC 2 cut(s) 50, 58
LweI GCATC 1 cut(s) 339
MaeII ACGT 1 cut(s) 414
MalI GATC 1 cut(s) 264
MboI GATC 1 cut(s) 262
MboII GAAGA 3 cut(s) 35, 86, 190
MflI RGATCY 1 cut(s) 262
MhlI GDGCHC 1 cut(s) 55
MlsI TGGCCA 1 cut(s) 194
MluNI TGGCCA 1 cut(s) 194
Mox20I TGGCCA 1 cut(s) 194
MscI TGGCCA 1 cut(s) 194
MslI CAYNNNNRTG 1 cut(s) 176
Msp20I TGGCCA 1 cut(s) 194
MspI CCGG 1 cut(s) 258
MspR9I CCNGG 2 cut(s) 258, 354
Mva1269I GAATGC 1 cut(s) 12
MvaI CCWGG 1 cut(s) 354
MvnI CGCG 1 cut(s) 400
MwoI GCNNNNNNNGC 1 cut(s) 386
NciI CCSGG 1 cut(s) 258
NdeII GATC 1 cut(s) 262
NlaIII CATG 3 cut(s) 67, 181, 193
NlaIV GGNNCC 2 cut(s) 209, 256
NspI RCATGY 1 cut(s) 67
PaeR7I CTCGAG 1 cut(s) 474
PctI GAATGC 1 cut(s) 12
PfoI TCCNGGA 1 cut(s) 256
PkrI GCNGC 3 cut(s) 42, 248, 399
Psp124BI GAGCTC 1 cut(s) 55
Psp6I CCWGG 1 cut(s) 352
PspFI CCCAGC 1 cut(s) 385
PspGI CCWGG 1 cut(s) 352
PspN4I GGNNCC 2 cut(s) 209, 256
PspPI GGNCC 2 cut(s) 254, 271
PspXI VCTCGAGB 1 cut(s) 474
PsuI RGATCY 1 cut(s) 262
RseI CAYNNNNRTG 1 cut(s) 176
SacI GAGCTC 1 cut(s) 55
SatI GCNGC 3 cut(s) 41, 247, 398
Sau3AI GATC 1 cut(s) 262
Sau96I GGNCC 2 cut(s) 254, 271
ScrFI CCNGG 2 cut(s) 258, 354
SduI GDGCHC 1 cut(s) 55
SfaNI GCATC 1 cut(s) 339
Sfr274I CTCGAG 1 cut(s) 474
SinI GGWCC 1 cut(s) 254
SlaI CTCGAG 1 cut(s) 474
SmiMI CAYNNNNRTG 1 cut(s) 176
SmlI CTYRAG 2 cut(s) 266, 474
SmoI CTYRAG 2 cut(s) 266, 474
SsiI CCGC 5 cut(s) 41, 137, 247, 398, 470
SstI GAGCTC 1 cut(s) 55
StyD4I CCNGG 2 cut(s) 256, 352
TaaI ACNGT 1 cut(s) 322
TaiI ACGT 1 cut(s) 417
TaqI TCGA 2 cut(s) 201, 475
TauI GCSGC 3 cut(s) 43, 249, 400
TscAI CASTG 3 cut(s) 166, 337, 348
TspDTI ATGAA 2 cut(s) 364, 432
TspGWI ACGGA 1 cut(s) 72
TspRI CASTG 3 cut(s) 166, 337, 348
VpaK11BI GGWCC 1 cut(s) 254
XceI RCATGY 1 cut(s) 67
XhoI CTCGAG 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.