FvH4_6g10290

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0011151
Physical Location & Seq
Forward (+)
6121205 .. 6121669
465 bp
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UTR
Exon/CDS
Intron
FvH4_6g10290.t1

Sequence Viewer

Length: 465 bp
ATGGTTGTGCAAGAACACAGCTTTCAGTGGCCTCCAATTGGAGCTCCACTTAATAATATGCAGCAGCAGAGAGATGAGCCTATGAGTCCCTTTAACTCTTCAGTCAATGCTTTGTCGTTTGGTTTTGTAGCCACTGCCATTCTCATCTCCATGTTCTTAGTCATGGCCATCTTTGAGAGATTTTTCAAACCCACGTCGCCGGAATTCTCGCCGTCCGGCCGCCGAAGAATTGGAGATCTTGAGGCCCAGTTGGAGTTTAATGGAAAACTTGGTTACCCATCACCCAAAATGTCGGTGTATGCAGGTGGAGTTTCAGTTTTAATGCCTGGAGATGATATTCCATCCTACATTGCACACCCAACGCCGGTGCCCTGCCCTCCCGAACGCATATTTTGGCCTCCACATCAACACATATCATTGCCTAGTAGTAGTCCCGCTGCCAACTCCAACCAGAGCTCAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

16.87

Weight (kDa)

6.03

Isoelectric Point (pI)

74.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11120 AT1G11120
fragaria_vesca FvH4_3g04540 FvH4_6g10290
malus_domestica MD05G1181400.v1.1 MD05G1322600.v1.1 MD14G1018300.v1.1
prunus_persica Prupe.4G040100_v2.0.a1
pyrus_communis pycom05g29680 pycom10g25330
rosa_chinensis RchiOBHm_Chr5g0007461
rosa_laevigata RLG00000031458
rosa_multiflora Rmu_ssc0000182.1_g000001
rosa_roxburghii Rroxscaffold_1G00068930
rosa_rugosa Rorug04G0427000
rosa_samantha Rh5AG055400 Rh5BG053000 Rh5CG062800 Rh5DG052000
rosa_wichuraiana Rw5G005470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 293
Acc36I ACCTGC 1 cut(s) 293
AccB1I GGYRCC 1 cut(s) 367
AciI CCGC 2 cut(s) 220, 435
AcoI YGGCCR 2 cut(s) 165, 217
AcsI RAATTY 1 cut(s) 203
AcuI CTGAAG 1 cut(s) 84
AfiI CCNNNNNNNGG 2 cut(s) 38, 364
AgsI TTSAA 1 cut(s) 187
AjiI CACGTC 1 cut(s) 195
AjnI CCWGG 1 cut(s) 325
AluBI AGCT 3 cut(s) 21, 44, 456
AluI AGCT 3 cut(s) 21, 44, 456
Alw21I GWGCWC 2 cut(s) 46, 458
AoxI GGCC 5 cut(s) 29, 165, 217, 243, 395
ApeKI GCWGC 3 cut(s) 61, 64, 437
ApoI RAATTY 1 cut(s) 203
AspS9I GGNCC 1 cut(s) 244
AsuHPI GGTGA 1 cut(s) 273
BaeGI GKGCMC 1 cut(s) 372
BalI TGGCCA 1 cut(s) 167
BanI GGYRCC 1 cut(s) 367
BanII GRGCYC 2 cut(s) 46, 458
Bbv12I GWGCWC 2 cut(s) 46, 458
BbvI GCAGC 3 cut(s) 73, 76, 424
BccI CCATC 3 cut(s) 176, 286, 349
BceAI ACGGC 1 cut(s) 196
BciT130I CCWGG 1 cut(s) 327
BfaI CTAG 1 cut(s) 423
BfuAI ACCTGC 1 cut(s) 293
BglII AGATCT 1 cut(s) 235
BisI GCNGC 4 cut(s) 62, 65, 220, 438
BlsI GCNGC 4 cut(s) 63, 66, 221, 439
Bme1390I CCNGG 1 cut(s) 327
BmgBI CACGTC 1 cut(s) 195
BmgT120I GGNCC 1 cut(s) 244
BmiI GGNNCC 1 cut(s) 369
BmrFI CCNGG 1 cut(s) 327
BmrI ACTGGG 1 cut(s) 241
BmuI ACTGGG 1 cut(s) 241
BpmI CTGGAG 1 cut(s) 348
Bpu10I CCTNAGC 1 cut(s) 457
BpuEI CTTGAG 1 cut(s) 260
BsaXI ACNNNNNCTCC 2 cut(s) 300, 330
Bsc4I CCNNNNNNNGG 2 cut(s) 38, 364
Bse118I RCCGGY 1 cut(s) 364
Bse1I ACTGG 1 cut(s) 247
Bse3DI GCAATG 2 cut(s) 348, 416
BseBI CCWGG 1 cut(s) 327
BseGI GGATG 1 cut(s) 341
BseLI CCNNNNNNNGG 2 cut(s) 38, 364
BseMI GCAATG 2 cut(s) 348, 416
BseNI ACTGG 1 cut(s) 247
BseSI GKGCMC 1 cut(s) 372
BseX3I CGGCCG 1 cut(s) 217
BseXI GCAGC 3 cut(s) 73, 76, 424
Bsh1285I CGRYCG 1 cut(s) 220
BshFI GGCC 5 cut(s) 31, 167, 219, 245, 397
BshNI GGYRCC 1 cut(s) 367
BsiEI CGRYCG 1 cut(s) 220
BsiHKAI GWGCWC 2 cut(s) 46, 458
BsiSI CCGG 3 cut(s) 200, 216, 365
BslFI GGGAC 2 cut(s) 72, 417
BslI CCNNNNNNNGG 2 cut(s) 38, 364
BsmFI GGGAC 2 cut(s) 72, 417
BsnI GGCC 5 cut(s) 31, 167, 219, 245, 397
Bsp1286I GDGCHC 3 cut(s) 46, 372, 458
Bsp143I GATC 1 cut(s) 235
BspACI CCGC 2 cut(s) 220, 435
BspANI GGCC 5 cut(s) 31, 167, 219, 245, 397
BspLI GGNNCC 1 cut(s) 369
BspMI ACCTGC 1 cut(s) 293
BspT107I GGYRCC 1 cut(s) 367
BsrDI GCAATG 2 cut(s) 348, 416
BsrFI RCCGGY 1 cut(s) 364
BsrI ACTGG 1 cut(s) 247
BssAI RCCGGY 1 cut(s) 364
BssMI GATC 1 cut(s) 235
Bst2UI CCWGG 1 cut(s) 327
Bst6I CTCTTC 1 cut(s) 103
BstDEI CTNAG 2 cut(s) 157, 457
BstEII GGTNACC 1 cut(s) 272
BstF5I GGATG 1 cut(s) 341
BstKTI GATC 1 cut(s) 238
BstMBI GATC 1 cut(s) 235
BstMCI CGRYCG 1 cut(s) 220
BstNI CCWGG 1 cut(s) 327
BstPI GGTNACC 1 cut(s) 272
BstSCI CCNGG 1 cut(s) 325
BstSLI GKGCMC 1 cut(s) 372
BstV1I GCAGC 3 cut(s) 73, 76, 424
BstX2I RGATCY 1 cut(s) 235
BstYI RGATCY 1 cut(s) 235
BstZI CGGCCG 1 cut(s) 217
BsuRI GGCC 5 cut(s) 31, 167, 219, 245, 397
BtrI CACGTC 1 cut(s) 195
BtsCI GGATG 1 cut(s) 341
BtsI GCAGTG 1 cut(s) 132
BtsIMutI CAGTG 2 cut(s) 32, 132
BveI ACCTGC 1 cut(s) 293
Cfr10I RCCGGY 1 cut(s) 364
Cfr13I GGNCC 1 cut(s) 244
CviAII CATG 2 cut(s) 151, 163
DdeI CTNAG 2 cut(s) 157, 457
DpnI GATC 1 cut(s) 237
DpnII GATC 1 cut(s) 235
EaeI YGGCCR 2 cut(s) 165, 217
EagI CGGCCG 1 cut(s) 217
Eam1104I CTCTTC 1 cut(s) 103
EarI CTCTTC 1 cut(s) 103
Ecl136II GAGCTC 2 cut(s) 44, 456
EclXI CGGCCG 1 cut(s) 217
Eco24I GRGCYC 2 cut(s) 46, 458
Eco52I CGGCCG 1 cut(s) 217
Eco53kI GAGCTC 2 cut(s) 44, 456
Eco57I CTGAAG 1 cut(s) 84
Eco91I GGTNACC 1 cut(s) 272
EcoICRI GAGCTC 2 cut(s) 44, 456
EcoO65I GGTNACC 1 cut(s) 272
EcoRI GAATTC 1 cut(s) 203
EcoRII CCWGG 1 cut(s) 325
EcoT38I GRGCYC 2 cut(s) 46, 458
FaeI CATG 2 cut(s) 154, 166
FaiI YATR 7 cut(s) 59, 83, 152, 164, 300, 389, 413
FaqI GGGAC 2 cut(s) 72, 417
FatI CATG 2 cut(s) 150, 162
FauI CCCGC 1 cut(s) 442
Fnu4HI GCNGC 4 cut(s) 62, 65, 220, 438
FokI GGATG 1 cut(s) 328
FriOI GRGCYC 2 cut(s) 46, 458
Fsp4HI GCNGC 4 cut(s) 62, 65, 220, 438
FspBI CTAG 1 cut(s) 423
GluI GCNGC 4 cut(s) 62, 65, 220, 438
GsuI CTGGAG 1 cut(s) 348
HaeIII GGCC 5 cut(s) 31, 167, 219, 245, 397
HapII CCGG 3 cut(s) 200, 216, 365
Hin1II CATG 2 cut(s) 154, 166
HinfI GANTC 1 cut(s) 85
HpaII CCGG 3 cut(s) 200, 216, 365
HphI GGTGA 1 cut(s) 273
Hpy188III TCNNGA 2 cut(s) 239, 380
Hpy99I CGWCG 1 cut(s) 199
HpyCH4IV ACGT 1 cut(s) 194
HpyCH4V TGCA 4 cut(s) 10, 61, 302, 353
HpyF3I CTNAG 2 cut(s) 157, 457
HpySE526I ACGT 1 cut(s) 194
Hsp92II CATG 2 cut(s) 154, 166
Kzo9I GATC 1 cut(s) 235
LmnI GCTCC 2 cut(s) 41, 49
LpnPI CCDG 9 cut(s) 213, 229, 260, 288, 312, 339, 378, 385, 444
Lsp1109I GCAGC 3 cut(s) 73, 76, 424
MaeI CTAG 1 cut(s) 423
MaeII ACGT 1 cut(s) 194
MaeIII GTNAC 1 cut(s) 272
MalI GATC 1 cut(s) 237
MboI GATC 1 cut(s) 235
MboII GAAGA 2 cut(s) 90, 237
MfeI CAATTG 1 cut(s) 36
MflI RGATCY 1 cut(s) 235
MhlI GDGCHC 3 cut(s) 46, 372, 458
MlsI TGGCCA 1 cut(s) 167
MluCI AATT 3 cut(s) 36, 203, 228
MluNI TGGCCA 1 cut(s) 167
MlyI GAGTC 1 cut(s) 94
MmeI TCCRAC 1 cut(s) 231
MnlI CCTC 4 cut(s) 42, 235, 387, 408
Mox20I TGGCCA 1 cut(s) 167
MscI TGGCCA 1 cut(s) 167
MseI TTAA 4 cut(s) 51, 93, 258, 320
MslI CAYNNNNRTG 1 cut(s) 149
Msp20I TGGCCA 1 cut(s) 167
MspA1I CMGCKG 1 cut(s) 437
MspI CCGG 3 cut(s) 200, 216, 365
MspR9I CCNGG 1 cut(s) 327
MunI CAATTG 1 cut(s) 36
MvaI CCWGG 1 cut(s) 327
NdeII GATC 1 cut(s) 235
NlaIII CATG 2 cut(s) 154, 166
NlaIV GGNNCC 1 cut(s) 369
PaqCI CACCTGC 1 cut(s) 293
PkrI GCNGC 4 cut(s) 63, 66, 221, 439
PleI GAGTC 1 cut(s) 93
PpsI GAGTC 1 cut(s) 93
Psp124BI GAGCTC 2 cut(s) 46, 458
Psp6I CCWGG 1 cut(s) 325
PspEI GGTNACC 1 cut(s) 272
PspGI CCWGG 1 cut(s) 325
PspN4I GGNNCC 1 cut(s) 369
PspPI GGNCC 1 cut(s) 244
PsuI RGATCY 1 cut(s) 235
RseI CAYNNNNRTG 1 cut(s) 149
SacI GAGCTC 2 cut(s) 46, 458
SaqAI TTAA 4 cut(s) 51, 93, 258, 320
SatI GCNGC 4 cut(s) 62, 65, 220, 438
Sau3AI GATC 1 cut(s) 235
Sau96I GGNCC 1 cut(s) 244
SchI GAGTC 1 cut(s) 94
ScrFI CCNGG 1 cut(s) 327
SduI GDGCHC 3 cut(s) 46, 372, 458
SetI ASST 6 cut(s) 23, 46, 197, 307, 458, 463
SgrAI CRCCGGYG 1 cut(s) 364
SmiMI CAYNNNNRTG 1 cut(s) 149
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
Sse9I AATT 3 cut(s) 36, 203, 228
SsiI CCGC 2 cut(s) 220, 435
SspMI CTAG 1 cut(s) 423
SstI GAGCTC 2 cut(s) 46, 458
StyD4I CCNGG 1 cut(s) 325
TaiI ACGT 1 cut(s) 197
TasI AATT 3 cut(s) 36, 203, 228
TauI GCSGC 1 cut(s) 222
Tru1I TTAA 4 cut(s) 51, 93, 258, 320
Tru9I TTAA 4 cut(s) 51, 93, 258, 320
TscAI CASTG 2 cut(s) 32, 139
TseI GCWGC 3 cut(s) 61, 64, 437
TspRI CASTG 2 cut(s) 32, 139
XapI RAATTY 1 cut(s) 203
XspI CTAG 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.