MD05G1181400.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0011151
Physical Location & Seq
Reverse (-)
30981427 .. 30981852
426 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1181400.v1.1.491

Sequence Viewer

Length: 426 bp
ATGCTTGTTGTGAAAGAAGTTAGCTTTCAATGGTCGCCAATAAGAGCTCCACTAAACATGCTGAGAGAGGACCATCCAAGCAACCATCCTCCTCATTCCCCTTCTTTCAACAGCTCTGTCAATGCGGTATCGTTTGGATTTGTAGCCATTGGCATCCTCATCTTTCTGTTCTTAGTCATGGCCATCTTCGAGAGGTTCCTCAGACCCATCTCTCCTGATTTGTTGCTGTCCGGGCGCCGTGGGGGTGGAGATCTTGAGGCCCAAATAGGTTTCAATGGAAAGCTCAGCCACCCTTCACCAAAAATCTCGACTGAACTCGAGACAGCTGCTCTTCGCTCTCTGGCCTTGACAGATCATAGCCGTTGCATTGATATGAAGCTGCTGCAGAGGTGGAGTTGCTGTTGCAACTGTTGTAGAGGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

15.69

Weight (kDa)

8.91

Isoelectric Point (pI)

53.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11120 AT1G11120
fragaria_vesca FvH4_3g04540 FvH4_6g10290
malus_domestica MD05G1181400.v1.1 MD05G1322600.v1.1 MD14G1018300.v1.1
prunus_persica Prupe.4G040100_v2.0.a1
pyrus_communis pycom05g29680 pycom10g25330
rosa_chinensis RchiOBHm_Chr5g0007461
rosa_laevigata RLG00000031458
rosa_multiflora Rmu_ssc0000182.1_g000001
rosa_roxburghii Rroxscaffold_1G00068930
rosa_rugosa Rorug04G0427000
rosa_samantha Rh5AG055400 Rh5BG053000 Rh5CG062800 Rh5DG052000
rosa_wichuraiana Rw5G005470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 234
AciI CCGC 1 cut(s) 125
AcoI YGGCCR 1 cut(s) 180
AcyI GRCGYC 1 cut(s) 235
AgsI TTSAA 3 cut(s) 29, 109, 274
AluBI AGCT 6 cut(s) 24, 47, 114, 283, 326, 379
AluI AGCT 6 cut(s) 24, 47, 114, 283, 326, 379
Alw21I GWGCWC 1 cut(s) 49
Alw26I GTCTC 1 cut(s) 314
Ama87I CYCGRG 1 cut(s) 317
AoxI GGCC 3 cut(s) 180, 258, 342
ApeKI GCWGC 3 cut(s) 326, 379, 382
AspLEI GCGC 1 cut(s) 237
AspS9I GGNCC 2 cut(s) 70, 259
AsuC2I CCSGG 1 cut(s) 232
AsuHPI GGTGA 1 cut(s) 288
AvaI CYCGRG 1 cut(s) 317
AvaII GGWCC 1 cut(s) 70
BalI TGGCCA 1 cut(s) 182
BanI GGYRCC 1 cut(s) 234
BanII GRGCYC 1 cut(s) 49
Bbv12I GWGCWC 1 cut(s) 49
BbvI GCAGC 3 cut(s) 313, 366, 369
BccI CCATC 4 cut(s) 81, 93, 191, 215
BceAI ACGGC 2 cut(s) 222, 345
BcgI CGANNNNNNTGC 2 cut(s) 308, 342
BcnI CCSGG 1 cut(s) 232
BcoDI GTCTC 1 cut(s) 314
BfmI CTRYAG 1 cut(s) 383
BfoI RGCGCY 1 cut(s) 238
BglII AGATCT 1 cut(s) 250
BisI GCNGC 3 cut(s) 327, 380, 383
BlpI GCTNAGC 1 cut(s) 284
BlsI GCNGC 3 cut(s) 328, 381, 384
Bme1390I CCNGG 1 cut(s) 232
Bme18I GGWCC 1 cut(s) 70
BmeT110I CYCGRG 1 cut(s) 317
BmgT120I GGNCC 2 cut(s) 70, 259
BmiI GGNNCC 2 cut(s) 197, 236
BmrFI CCNGG 1 cut(s) 232
BmsI GCATC 1 cut(s) 162
Bpu1102I GCTNAGC 1 cut(s) 284
BpuEI CTTGAG 1 cut(s) 275
BpuMI CCSGG 1 cut(s) 232
BsaHI GRCGYC 1 cut(s) 235
BsaJI CCNNGG 1 cut(s) 238
BsaXI ACNNNNNCTCC 2 cut(s) 385, 415
BseDI CCNNGG 1 cut(s) 238
BseGI GGATG 3 cut(s) 73, 85, 153
BseMII CTCAG 3 cut(s) 53, 214, 298
BseRI GAGGAG 1 cut(s) 81
BseXI GCAGC 3 cut(s) 313, 366, 369
BshFI GGCC 3 cut(s) 182, 260, 344
BshNI GGYRCC 1 cut(s) 234
BsiHKAI GWGCWC 1 cut(s) 49
BsiHKCI CYCGRG 1 cut(s) 317
BsiSI CCGG 1 cut(s) 231
BsmAI GTCTC 1 cut(s) 314
BsnI GGCC 3 cut(s) 182, 260, 344
BsoBI CYCGRG 1 cut(s) 317
Bsp1286I GDGCHC 1 cut(s) 49
Bsp143I GATC 2 cut(s) 250, 352
Bsp1720I GCTNAGC 1 cut(s) 284
BspACI CCGC 1 cut(s) 125
BspANI GGCC 3 cut(s) 182, 260, 344
BspCNI CTCAG 3 cut(s) 54, 213, 297
BspLI GGNNCC 2 cut(s) 197, 236
BspMAI CTGCAG 1 cut(s) 387
BspQI GCTCTTC 1 cut(s) 336
BspT107I GGYRCC 1 cut(s) 234
BssECI CCNNGG 1 cut(s) 238
BssMI GATC 2 cut(s) 250, 352
BssNI GRCGYC 1 cut(s) 235
Bst4CI ACNGT 1 cut(s) 410
Bst6I CTCTTC 1 cut(s) 336
BstACI GRCGYC 1 cut(s) 235
BstDEI CTNAG 4 cut(s) 62, 172, 200, 284
BstDSI CCRYGG 1 cut(s) 238
BstF5I GGATG 3 cut(s) 73, 85, 153
BstH2I RGCGCY 1 cut(s) 238
BstHHI GCGC 1 cut(s) 237
BstKTI GATC 2 cut(s) 253, 355
BstMAI GTCTC 1 cut(s) 314
BstMBI GATC 2 cut(s) 250, 352
BstMWI GCNNNNNNNGC 1 cut(s) 232
BstNSI RCATGY 1 cut(s) 61
BstSCI CCNGG 1 cut(s) 230
BstSFI CTRYAG 1 cut(s) 383
BstV1I GCAGC 3 cut(s) 313, 366, 369
BstX2I RGATCY 1 cut(s) 250
BstYI RGATCY 1 cut(s) 250
BsuRI GGCC 3 cut(s) 182, 260, 344
BtgI CCRYGG 1 cut(s) 238
BtsCI GGATG 3 cut(s) 73, 85, 153
CfoI GCGC 1 cut(s) 237
Cfr13I GGNCC 2 cut(s) 70, 259
CviAII CATG 2 cut(s) 58, 178
DdeI CTNAG 4 cut(s) 62, 172, 200, 284
DinI GGCGCC 1 cut(s) 236
DpnI GATC 2 cut(s) 252, 354
DpnII GATC 2 cut(s) 250, 352
EaeI YGGCCR 1 cut(s) 180
Eam1104I CTCTTC 1 cut(s) 336
EarI CTCTTC 1 cut(s) 336
Ecl136II GAGCTC 1 cut(s) 47
Eco24I GRGCYC 1 cut(s) 49
Eco47I GGWCC 1 cut(s) 70
Eco53kI GAGCTC 1 cut(s) 47
Eco88I CYCGRG 1 cut(s) 317
EcoICRI GAGCTC 1 cut(s) 47
EcoT38I GRGCYC 1 cut(s) 49
EgeI GGCGCC 1 cut(s) 236
EheI GGCGCC 1 cut(s) 236
FaeI CATG 2 cut(s) 61, 181
FaiI YATR 4 cut(s) 59, 179, 357, 374
FatI CATG 2 cut(s) 57, 177
Fnu4HI GCNGC 3 cut(s) 327, 380, 383
FokI GGATG 3 cut(s) 60, 72, 140
FriOI GRGCYC 1 cut(s) 49
Fsp4HI GCNGC 3 cut(s) 327, 380, 383
GlaI GCGC 1 cut(s) 236
GluI GCNGC 3 cut(s) 327, 380, 383
HaeII RGCGCY 1 cut(s) 238
HaeIII GGCC 3 cut(s) 182, 260, 344
HapII CCGG 1 cut(s) 231
HhaI GCGC 1 cut(s) 237
Hin1I GRCGYC 1 cut(s) 235
Hin1II CATG 2 cut(s) 61, 181
Hin6I GCGC 1 cut(s) 235
HinP1I GCGC 1 cut(s) 235
HpaII CCGG 1 cut(s) 231
HphI GGTGA 1 cut(s) 288
Hpy188I TCNGA 1 cut(s) 203
Hpy188III TCNNGA 5 cut(s) 190, 215, 254, 307, 319
HpyAV CCTTC 2 cut(s) 111, 303
HpyCH4III ACNGT 1 cut(s) 410
HpyCH4V TGCA 3 cut(s) 366, 385, 405
HpyF10VI GCNNNNNNNGC 1 cut(s) 232
HpyF3I CTNAG 4 cut(s) 62, 172, 200, 284
Hsp92I GRCGYC 1 cut(s) 235
Hsp92II CATG 2 cut(s) 61, 181
HspAI GCGC 1 cut(s) 235
KasI GGCGCC 1 cut(s) 234
Kzo9I GATC 2 cut(s) 250, 352
LguI GCTCTTC 1 cut(s) 336
LmnI GCTCC 1 cut(s) 52
LpnPI CCDG 3 cut(s) 228, 244, 326
Lsp1109I GCAGC 3 cut(s) 313, 366, 369
LweI GCATC 1 cut(s) 162
MalI GATC 2 cut(s) 252, 354
MboI GATC 2 cut(s) 250, 352
MboII GAAGA 2 cut(s) 178, 323
MflI RGATCY 1 cut(s) 250
MhlI GDGCHC 1 cut(s) 49
MlsI TGGCCA 1 cut(s) 182
MluNI TGGCCA 1 cut(s) 182
Mly113I GGCGCC 1 cut(s) 235
MnlI CCTC 9 cut(s) 61, 99, 102, 167, 186, 209, 250, 381, 410
Mox20I TGGCCA 1 cut(s) 182
MscI TGGCCA 1 cut(s) 182
MslI CAYNNNNRTG 1 cut(s) 371
Msp20I TGGCCA 1 cut(s) 182
MspA1I CMGCKG 1 cut(s) 326
MspI CCGG 1 cut(s) 231
MspR9I CCNGG 1 cut(s) 232
MwoI GCNNNNNNNGC 1 cut(s) 232
NarI GGCGCC 1 cut(s) 235
NciI CCSGG 1 cut(s) 232
NdeII GATC 2 cut(s) 250, 352
NlaIII CATG 2 cut(s) 61, 181
NlaIV GGNNCC 2 cut(s) 197, 236
NspI RCATGY 1 cut(s) 61
PaeR7I CTCGAG 1 cut(s) 317
PciSI GCTCTTC 1 cut(s) 336
PkrI GCNGC 3 cut(s) 328, 381, 384
PluTI GGCGCC 1 cut(s) 238
Psp124BI GAGCTC 1 cut(s) 49
PspN4I GGNNCC 2 cut(s) 197, 236
PspPI GGNCC 2 cut(s) 70, 259
PstI CTGCAG 1 cut(s) 387
PsuI RGATCY 1 cut(s) 250
PvuII CAGCTG 1 cut(s) 326
RseI CAYNNNNRTG 1 cut(s) 371
SacI GAGCTC 1 cut(s) 49
SapI GCTCTTC 1 cut(s) 336
SatI GCNGC 3 cut(s) 327, 380, 383
Sau3AI GATC 2 cut(s) 250, 352
Sau96I GGNCC 2 cut(s) 70, 259
ScrFI CCNGG 1 cut(s) 232
SduI GDGCHC 1 cut(s) 49
SetI ASST 9 cut(s) 26, 49, 116, 197, 271, 285, 328, 381, 392
SfaNI GCATC 1 cut(s) 162
SfcI CTRYAG 1 cut(s) 383
SfoI GGCGCC 1 cut(s) 236
Sfr274I CTCGAG 1 cut(s) 317
SinI GGWCC 1 cut(s) 70
SlaI CTCGAG 1 cut(s) 317
SmiMI CAYNNNNRTG 1 cut(s) 371
SmlI CTYRAG 2 cut(s) 254, 317
SmoI CTYRAG 2 cut(s) 254, 317
SsiI CCGC 1 cut(s) 125
SspDI GGCGCC 1 cut(s) 234
SstI GAGCTC 1 cut(s) 49
StyD4I CCNGG 1 cut(s) 230
TaaI ACNGT 1 cut(s) 410
TaqI TCGA 3 cut(s) 189, 308, 318
TseI GCWGC 3 cut(s) 326, 379, 382
TspDTI ATGAA 1 cut(s) 389
VpaK11BI GGWCC 1 cut(s) 70
XceI RCATGY 1 cut(s) 61
XhoI CTCGAG 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.