Prupe.4G040100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0011151
Physical Location & Seq
Reverse (-)
1887231 .. 1890935
3705 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G040100.1

Sequence Viewer

Length: 498 bp
ATGGTTGTTGTGAAAGAACATAGCTTTGAATGGCCGCCAATAGGAGCTCCACTAAACATGCAGAGAGATGAGCATCCAGGCAGCCCTCCTGCTTTTAATAGCTCTGTCAATGCGGTGTCGTTTGGGTTCGTAGCCACTGCCATTCTCATCTCCATGTTCTTAGTCATGGCTATCTTTGAGAGATTCCTCAGACCCACCTCGTCGGATTTGACACCGTCCGGTCGCCGGAGAAGCGGAGATCTTGAGGCCCAGTTGGGCTTCAATGGAAAACTCAGCCACCCTTCACCCAAAATGACTGTGTATGCAAGTGGAGTTTCAGTGTTGATGCCTGGAGATGATATCCCCACCTTCATTGCACATCCAGCCCCTGTGCCTTGCCCCCCAGAACGCATTTGTTTGCCTCAACATCAACATATTTCCTTGCCCAACCCCAACCCCAACCCCAACCCCACCTCAAACTCAAACTCGAATTCGAACATGAGCTCAAACTCAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

17.77

Weight (kDa)

6.57

Isoelectric Point (pI)

57.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11120 AT1G11120
fragaria_vesca FvH4_3g04540 FvH4_6g10290
malus_domestica MD05G1181400.v1.1 MD05G1322600.v1.1 MD14G1018300.v1.1
prunus_persica Prupe.4G040100_v2.0.a1
pyrus_communis pycom05g29680 pycom10g25330
rosa_chinensis RchiOBHm_Chr5g0007461
rosa_laevigata RLG00000031458
rosa_multiflora Rmu_ssc0000182.1_g000001
rosa_roxburghii Rroxscaffold_1G00068930
rosa_rugosa Rorug04G0427000
rosa_samantha Rh5AG055400 Rh5BG053000 Rh5CG062800 Rh5DG052000
rosa_wichuraiana Rw5G005470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 35, 113, 234
AcoI YGGCCR 1 cut(s) 32
AcsI RAATTY 1 cut(s) 469
AfiI CCNNNNNNNGG 2 cut(s) 41, 225
AgsI TTSAA 2 cut(s) 29, 262
AjnI CCWGG 2 cut(s) 76, 328
AluBI AGCT 4 cut(s) 24, 47, 102, 483
AluI AGCT 4 cut(s) 24, 47, 102, 483
Alw21I GWGCWC 2 cut(s) 49, 485
AlwNI CAGNNNCTG 1 cut(s) 368
AoxI GGCC 2 cut(s) 32, 246
ApeKI GCWGC 1 cut(s) 81
ApoI RAATTY 1 cut(s) 469
AspS9I GGNCC 1 cut(s) 247
AsuHPI GGTGA 1 cut(s) 276
AsuII TTCGAA 1 cut(s) 473
BanII GRGCYC 2 cut(s) 49, 485
Bbv12I GWGCWC 2 cut(s) 49, 485
BbvI GCAGC 1 cut(s) 93
BciT130I CCWGG 2 cut(s) 78, 330
BglII AGATCT 1 cut(s) 238
BisI GCNGC 2 cut(s) 35, 82
BlsI GCNGC 2 cut(s) 36, 83
Bme1390I CCNGG 2 cut(s) 78, 330
BmgT120I GGNCC 1 cut(s) 247
BmrFI CCNGG 2 cut(s) 78, 330
BmrI ACTGGG 1 cut(s) 244
BmsI GCATC 2 cut(s) 82, 315
BmuI ACTGGG 1 cut(s) 244
BpmI CTGGAG 1 cut(s) 351
Bpu14I TTCGAA 1 cut(s) 473
BpuEI CTTGAG 2 cut(s) 263, 475
BsaBI GATNNNNATC 1 cut(s) 72
BsaWI WCCGGW 1 cut(s) 218
BsaXI ACNNNNNCTCC 2 cut(s) 303, 333
Bsc4I CCNNNNNNNGG 2 cut(s) 41, 225
Bse1I ACTGG 1 cut(s) 250
Bse3DI GCAATG 1 cut(s) 351
Bse8I GATNNNNATC 1 cut(s) 72
BseBI CCWGG 2 cut(s) 78, 330
BseGI GGATG 2 cut(s) 73, 358
BseJI GATNNNNATC 1 cut(s) 72
BseLI CCNNNNNNNGG 2 cut(s) 41, 225
BseMI GCAATG 1 cut(s) 351
BseMII CTCAG 2 cut(s) 202, 286
BseNI ACTGG 1 cut(s) 250
BseXI GCAGC 1 cut(s) 93
Bsh1285I CGRYCG 1 cut(s) 223
BshFI GGCC 2 cut(s) 34, 248
BsiEI CGRYCG 1 cut(s) 223
BsiHKAI GWGCWC 2 cut(s) 49, 485
BsiSI CCGG 2 cut(s) 219, 226
BslI CCNNNNNNNGG 2 cut(s) 41, 225
BsnI GGCC 2 cut(s) 34, 248
Bsp119I TTCGAA 1 cut(s) 473
Bsp1286I GDGCHC 2 cut(s) 49, 485
Bsp143I GATC 1 cut(s) 238
BspACI CCGC 3 cut(s) 35, 113, 234
BspANI GGCC 2 cut(s) 34, 248
BspCNI CTCAG 2 cut(s) 201, 285
BspT104I TTCGAA 1 cut(s) 473
BsrDI GCAATG 1 cut(s) 351
BsrI ACTGG 1 cut(s) 250
BssMI GATC 1 cut(s) 238
Bst2UI CCWGG 2 cut(s) 78, 330
Bst4CI ACNGT 2 cut(s) 216, 298
BstBI TTCGAA 1 cut(s) 473
BstDEI CTNAG 3 cut(s) 160, 188, 272
BstF5I GGATG 2 cut(s) 73, 358
BstKTI GATC 1 cut(s) 241
BstMBI GATC 1 cut(s) 238
BstMCI CGRYCG 1 cut(s) 223
BstMWI GCNNNNNNNGC 2 cut(s) 231, 362
BstNI CCWGG 2 cut(s) 78, 330
BstNSI RCATGY 1 cut(s) 61
BstSCI CCNGG 2 cut(s) 76, 328
BstV1I GCAGC 1 cut(s) 93
BstX2I RGATCY 1 cut(s) 238
BstYI RGATCY 1 cut(s) 238
BsuRI GGCC 2 cut(s) 34, 248
BtsCI GGATG 2 cut(s) 73, 358
BtsI GCAGTG 1 cut(s) 135
BtsIMutI CAGTG 2 cut(s) 135, 324
CaiI CAGNNNCTG 1 cut(s) 368
Cfr13I GGNCC 1 cut(s) 247
CspCI CAANNNNNGTGG 2 cut(s) 334, 369
CviAII CATG 4 cut(s) 58, 154, 166, 478
DdeI CTNAG 3 cut(s) 160, 188, 272
DpnI GATC 1 cut(s) 240
DpnII GATC 1 cut(s) 238
EaeI YGGCCR 1 cut(s) 32
Ecl136II GAGCTC 2 cut(s) 47, 483
Eco24I GRGCYC 2 cut(s) 49, 485
Eco32I GATATC 1 cut(s) 340
Eco53kI GAGCTC 2 cut(s) 47, 483
EcoICRI GAGCTC 2 cut(s) 47, 483
EcoRI GAATTC 1 cut(s) 469
EcoRII CCWGG 2 cut(s) 76, 328
EcoRV GATATC 1 cut(s) 340
EcoT38I GRGCYC 2 cut(s) 49, 485
FaeI CATG 4 cut(s) 61, 157, 169, 481
FaiI YATR 7 cut(s) 21, 59, 155, 167, 303, 414, 479
FatI CATG 4 cut(s) 57, 153, 165, 477
Fnu4HI GCNGC 2 cut(s) 35, 82
FokI GGATG 2 cut(s) 60, 345
FriOI GRGCYC 2 cut(s) 49, 485
Fsp4HI GCNGC 2 cut(s) 35, 82
GluI GCNGC 2 cut(s) 35, 82
GsuI CTGGAG 1 cut(s) 351
HaeIII GGCC 2 cut(s) 34, 248
HapII CCGG 2 cut(s) 219, 226
Hin1II CATG 4 cut(s) 61, 157, 169, 481
HinfI GANTC 1 cut(s) 183
HpaII CCGG 2 cut(s) 219, 226
HphI GGTGA 1 cut(s) 276
Hpy188I TCNGA 2 cut(s) 191, 205
Hpy188III TCNNGA 1 cut(s) 242
Hpy99I CGWCG 1 cut(s) 205
HpyAV CCTTC 2 cut(s) 291, 358
HpyCH4III ACNGT 2 cut(s) 216, 298
HpyCH4V TGCA 3 cut(s) 61, 305, 356
HpyF10VI GCNNNNNNNGC 2 cut(s) 231, 362
HpyF3I CTNAG 3 cut(s) 160, 188, 272
Hsp92II CATG 4 cut(s) 61, 157, 169, 481
Kzo9I GATC 1 cut(s) 238
LmnI GCTCC 2 cut(s) 44, 52
Lsp1109I GCAGC 1 cut(s) 93
LweI GCATC 2 cut(s) 82, 315
MalI GATC 1 cut(s) 240
MboI GATC 1 cut(s) 238
MflI RGATCY 1 cut(s) 238
MhlI GDGCHC 2 cut(s) 49, 485
MluCI AATT 1 cut(s) 469
MmeI TCCRAC 1 cut(s) 183
MnlI CCTC 6 cut(s) 96, 197, 208, 238, 411, 463
MseI TTAA 1 cut(s) 96
MslI CAYNNNNRTG 1 cut(s) 152
MspI CCGG 2 cut(s) 219, 226
MspR9I CCNGG 2 cut(s) 78, 330
MvaI CCWGG 2 cut(s) 78, 330
MwoI GCNNNNNNNGC 2 cut(s) 231, 362
NdeII GATC 1 cut(s) 238
NlaIII CATG 4 cut(s) 61, 157, 169, 481
NspI RCATGY 1 cut(s) 61
NspV TTCGAA 1 cut(s) 473
PfeI GAWTC 1 cut(s) 183
PflFI GACNNNGTC 1 cut(s) 214
PkrI GCNGC 2 cut(s) 36, 83
Psp124BI GAGCTC 2 cut(s) 49, 485
Psp6I CCWGG 2 cut(s) 76, 328
PspGI CCWGG 2 cut(s) 76, 328
PspPI GGNCC 1 cut(s) 247
PstNI CAGNNNCTG 1 cut(s) 368
PsuI RGATCY 1 cut(s) 238
PsyI GACNNNGTC 1 cut(s) 214
RseI CAYNNNNRTG 1 cut(s) 152
SacI GAGCTC 2 cut(s) 49, 485
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 2 cut(s) 35, 82
Sau3AI GATC 1 cut(s) 238
Sau96I GGNCC 1 cut(s) 247
ScrFI CCNGG 2 cut(s) 78, 330
SduI GDGCHC 2 cut(s) 49, 485
SetI ASST 7 cut(s) 26, 49, 104, 200, 350, 455, 485
SfaNI GCATC 2 cut(s) 82, 315
SfuI TTCGAA 1 cut(s) 473
SmiMI CAYNNNNRTG 1 cut(s) 152
SmlI CTYRAG 2 cut(s) 242, 490
SmoI CTYRAG 2 cut(s) 242, 490
Sse9I AATT 1 cut(s) 469
SsiI CCGC 3 cut(s) 35, 113, 234
SstI GAGCTC 2 cut(s) 49, 485
StyD4I CCNGG 2 cut(s) 76, 328
TaaI ACNGT 2 cut(s) 216, 298
TaqI TCGA 2 cut(s) 467, 473
TasI AATT 1 cut(s) 469
TauI GCSGC 1 cut(s) 37
TfiI GAWTC 1 cut(s) 183
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TscAI CASTG 2 cut(s) 142, 324
TseI GCWGC 1 cut(s) 81
TspDTI ATGAA 1 cut(s) 340
TspRI CASTG 2 cut(s) 142, 324
Tth111I GACNNNGTC 1 cut(s) 214
XapI RAATTY 1 cut(s) 469
XceI RCATGY 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.