Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012077

Physical Location & Seq

Genomic Coordinates Forward (+)

4298666 .. 4299571

Gene Structure 906 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G12630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGAATAGTTCAATGGCTTCTGCCGGCTTAGGTAGCCGGAGAAAGGATCCGGTGTACAGAGGAATCCGGTGCCGAAGTGGGAAATGGGTCTCCGAGATTCGTGAGCCGAGGAAAACCACGAGAATCTGGCTTGGAACTTACCCCATGGCAGAGATGGCAGCAGCCGCCTATGATGTGGCTGCTATGGCTCTTAAAGGAAGAGAAGCTGTCTTGAACTTCCCTGGATCCGTCGGGTCATACCCGGTTCCTGAATCAACATCCGCAGCAGATATACGAGCCGCTGCGGCAGCCGCAGCAGCAATGAAGGGATGTGAGGAAGGGGAGGAGGAGAAAAAGGCAAAGGAGAAGAAGAGTAGTAGTTCGAAGTCGAGAGCGCGTGAGTGCCACGTAGATAATGATGTTGGATCTTCGTCGTGGTGTGGGACAGAGTTCATGGACGAAGAAGAAGTCTTGAATATGCCTAATCTGCTGGCTAATATGGCAGAAGGGATGATGGTTGCGCCGCCGTCGTGGATGGGTTCTCGGCCGTCGGATGACTCTCCGGAGAATTCAAATGATGAGGACTTGTGGGGCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

192

Amino Acids

20.77

Weight (kDa)

5.12

Isoelectric Point (pI)

57.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	17 - 66	2.7e-11	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12630 AT5G52020
fragaria_vesca	FvH4_7g28960
malus_domestica	MD01G1196300.v1.1 MD07G1263200.v1.1
prunus_persica	Prupe.2G289600_v2.0.a1
pyrus_communis	pycom01g20680 pycom07g24220
rosa_chinensis	RchiOBHm_Chr1g0376651
rosa_laevigata	RLG00000026584
rosa_multiflora	Rmu_co8365147.1_g000001 Rmu_sc0005594.1_g000003
rosa_roxburghii	Rroxscaffold_4G00281910
rosa_rugosa	Rorug01G0397100
rosa_samantha	Rh1AG414000 Rh1BG373400 Rh1CG387300 Rh1DG404400
rosa_wichuraiana	Rw1G036320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	69
AccII	CGCG	1 cut(s)	376
AccIII	TCCGGA	1 cut(s)	541
AciI	CCGC	6 cut(s)	165, 261, 279, 284, 291, 503
AclWI	GGATC	5 cut(s)	41, 54, 219, 232, 412
AcoI	YGGCCR	1 cut(s)	524
AcsI	RAATTY	1 cut(s)	547
AfaI	GTAC	1 cut(s)	56
AfiI	CCNNNNNNNGG	1 cut(s)	43
AgsI	TTSAA	4 cut(s)	12, 214, 454, 552
AjnI	CCWGG	1 cut(s)	220
AluBI	AGCT	1 cut(s)	206
AluI	AGCT	1 cut(s)	206
Alw26I	GTCTC	1 cut(s)	94
AlwI	GGATC	5 cut(s)	41, 54, 219, 232, 412
Aor13HI	TCCGGA	1 cut(s)	541
AoxI	GGCC	1 cut(s)	524
ApeKI	GCWGC	8 cut(s)	158, 161, 179, 263, 281, 287, 293, 296
ApoI	RAATTY	1 cut(s)	547
ArsI	GACNNNNNNTTYG	2 cut(s)	432, 464
AspLEI	GCGC	2 cut(s)	376, 502
AsuC2I	CCSGG	1 cut(s)	242
AsuII	TTCGAA	1 cut(s)	362
BamHI	GGATCC	2 cut(s)	46, 224
BanI	GGYRCC	1 cut(s)	69
BauI	CACGAG	1 cut(s)	118
BbvI	GCAGC	8 cut(s)	166, 170, 173, 268, 275, 299, 305, 308
BccI	CCATC	3 cut(s)	148, 487, 508
BceAI	ACGGC	2 cut(s)	490, 511
BciT130I	CCWGG	1 cut(s)	222
BcnI	CCSGG	1 cut(s)	242
BcoDI	GTCTC	1 cut(s)	94
BglI	GCCNNNNNGGC	1 cut(s)	284
Bme1390I	CCNGG	2 cut(s)	222, 242
BmiI	GGNNCC	4 cut(s)	48, 71, 226, 246
BmrFI	CCNGG	2 cut(s)	222, 242
Bpu10I	CCTNAGC	1 cut(s)	28
Bpu14I	TTCGAA	1 cut(s)	362
BpuMI	CCSGG	1 cut(s)	242
BsaAI	YACGTR	1 cut(s)	388
BsaI	GGTCTC	1 cut(s)	94
BsaJI	CCNNGG	3 cut(s)	107, 144, 220
BsaWI	WCCGGW	3 cut(s)	49, 66, 541
Bsc4I	CCNNNNNNNGG	1 cut(s)	43
Bse118I	RCCGGY	1 cut(s)	23
Bse3DI	GCAATG	1 cut(s)	306
BseAI	TCCGGA	1 cut(s)	541
BseBI	CCWGG	1 cut(s)	222
BseDI	CCNNGG	3 cut(s)	107, 144, 220
BseGI	GGATG	5 cut(s)	257, 314, 495, 519, 538
BseLI	CCNNNNNNNGG	1 cut(s)	43
BseMI	GCAATG	1 cut(s)	306
BseRI	GAGGAG	2 cut(s)	338, 341
BseX3I	CGGCCG	1 cut(s)	524
BseXI	GCAGC	8 cut(s)	166, 170, 173, 268, 275, 299, 305, 308
Bsh1236I	CGCG	1 cut(s)	376
Bsh1285I	CGRYCG	1 cut(s)	527
BshFI	GGCC	1 cut(s)	526
BshNI	GGYRCC	1 cut(s)	69
BsiEI	CGRYCG	1 cut(s)	527
BsiSI	CCGG	6 cut(s)	24, 37, 50, 67, 242, 542
BslFI	GGGAC	1 cut(s)	436
BslI	CCNNNNNNNGG	1 cut(s)	43
BsmAI	GTCTC	1 cut(s)	94
BsmFI	GGGAC	1 cut(s)	436
BsnI	GGCC	1 cut(s)	526
Bso31I	GGTCTC	1 cut(s)	94
Bsp119I	TTCGAA	1 cut(s)	362
Bsp13I	TCCGGA	1 cut(s)	541
Bsp1407I	TGTACA	1 cut(s)	54
Bsp143I	GATC	3 cut(s)	46, 224, 404
Bsp19I	CCATGG	1 cut(s)	144
BspACI	CCGC	6 cut(s)	165, 261, 279, 284, 291, 503
BspANI	GGCC	1 cut(s)	526
BspEI	TCCGGA	1 cut(s)	541
BspFNI	CGCG	1 cut(s)	376
BspLI	GGNNCC	4 cut(s)	48, 71, 226, 246
BspPI	GGATC	5 cut(s)	41, 54, 219, 232, 412
BspT104I	TTCGAA	1 cut(s)	362
BspT107I	GGYRCC	1 cut(s)	69
BspTNI	GGTCTC	1 cut(s)	94
BsrDI	GCAATG	1 cut(s)	306
BsrFI	RCCGGY	1 cut(s)	23
BsrGI	TGTACA	1 cut(s)	54
BssAI	RCCGGY	1 cut(s)	23
BssECI	CCNNGG	3 cut(s)	107, 144, 220
BssMI	GATC	3 cut(s)	46, 224, 404
BssSI	CACGAG	1 cut(s)	118
BssT1I	CCWWGG	1 cut(s)	144
Bst2BI	CACGAG	1 cut(s)	118
Bst2UI	CCWGG	1 cut(s)	222
Bst6I	CTCTTC	2 cut(s)	193, 344
BstAUI	TGTACA	1 cut(s)	54
BstBAI	YACGTR	1 cut(s)	388
BstBI	TTCGAA	1 cut(s)	362
BstC8I	GCNNGC	2 cut(s)	25, 471
BstDEI	CTNAG	1 cut(s)	28
BstDSI	CCRYGG	1 cut(s)	144
BstF5I	GGATG	5 cut(s)	257, 314, 495, 519, 538
BstFNI	CGCG	1 cut(s)	376
BstHHI	GCGC	2 cut(s)	376, 502
BstKTI	GATC	3 cut(s)	49, 227, 407
BstMAI	GTCTC	1 cut(s)	94
BstMBI	GATC	3 cut(s)	46, 224, 404
BstMCI	CGRYCG	1 cut(s)	527
BstNI	CCWGG	1 cut(s)	222
BstSCI	CCNGG	2 cut(s)	220, 240
BstUI	CGCG	1 cut(s)	376
BstV1I	GCAGC	8 cut(s)	166, 170, 173, 268, 275, 299, 305, 308
BstX2I	RGATCY	3 cut(s)	46, 224, 404
BstYI	RGATCY	3 cut(s)	46, 224, 404
BstZI	CGGCCG	1 cut(s)	524
BsuRI	GGCC	1 cut(s)	526
BtgI	CCRYGG	1 cut(s)	144
BtsCI	GGATG	5 cut(s)	257, 314, 495, 519, 538
Cac8I	GCNNGC	2 cut(s)	25, 471
CfoI	GCGC	2 cut(s)	376, 502
Cfr10I	RCCGGY	1 cut(s)	23
Csp6I	GTAC	1 cut(s)	55
CviAII	CATG	2 cut(s)	145, 433
CviQI	GTAC	1 cut(s)	55
DdeI	CTNAG	1 cut(s)	28
DpnI	GATC	3 cut(s)	48, 226, 406
DpnII	GATC	3 cut(s)	46, 224, 404
EaeI	YGGCCR	1 cut(s)	524
EagI	CGGCCG	1 cut(s)	524
Eam1104I	CTCTTC	2 cut(s)	193, 344
EarI	CTCTTC	2 cut(s)	193, 344
EclXI	CGGCCG	1 cut(s)	524
Eco130I	CCWWGG	1 cut(s)	144
Eco31I	GGTCTC	1 cut(s)	94
Eco52I	CGGCCG	1 cut(s)	524
EcoRI	GAATTC	1 cut(s)	547
EcoRII	CCWGG	1 cut(s)	220
EcoT14I	CCWWGG	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	2 cut(s)	148, 436
FaiI	YATR	8 cut(s)	146, 171, 185, 238, 272, 434, 458, 479
FaqI	GGGAC	1 cut(s)	436
FatI	CATG	2 cut(s)	144, 432
FokI	GGATG	5 cut(s)	244, 321, 502, 526, 545
GlaI	GCGC	2 cut(s)	375, 501
HaeIII	GGCC	1 cut(s)	526
HapII	CCGG	6 cut(s)	24, 37, 50, 67, 242, 542
HhaI	GCGC	2 cut(s)	376, 502
Hin1II	CATG	2 cut(s)	148, 436
Hin6I	GCGC	2 cut(s)	374, 500
HinP1I	GCGC	2 cut(s)	374, 500
HinfI	GANTC	5 cut(s)	63, 97, 123, 251, 536
HpaII	CCGG	6 cut(s)	24, 37, 50, 67, 242, 542
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	2 cut(s)	94, 532
Hpy188III	TCNNGA	6 cut(s)	101, 211, 248, 369, 451, 542
Hpy8I	GTNNAC	1 cut(s)	55
Hpy99I	CGWCG	4 cut(s)	233, 415, 511, 532
HpyAV	CCTTC	3 cut(s)	298, 311, 479
HpyCH4IV	ACGT	1 cut(s)	387
HpyF3I	CTNAG	1 cut(s)	28
HpySE526I	ACGT	1 cut(s)	387
Hsp92II	CATG	2 cut(s)	148, 436
HspAI	GCGC	2 cut(s)	374, 500
Kpn2I	TCCGGA	1 cut(s)	541
KroI	GCCGGC	1 cut(s)	23
KroNI	GCCGGC	1 cut(s)	25
Kzo9I	GATC	3 cut(s)	46, 224, 404
Lsp1109I	GCAGC	8 cut(s)	166, 170, 173, 268, 275, 299, 305, 308
MaeII	ACGT	1 cut(s)	387
MalI	GATC	3 cut(s)	48, 226, 406
MboI	GATC	3 cut(s)	46, 224, 404
MboII	GAAGA	6 cut(s)	210, 358, 361, 399, 452, 455
MflI	RGATCY	3 cut(s)	46, 224, 404
MluCI	AATT	1 cut(s)	547
MlyI	GAGTC	1 cut(s)	530
MmeI	TCCRAC	2 cut(s)	382, 510
MnlI	CCTC	6 cut(s)	53, 102, 307, 316, 319, 553
MroI	TCCGGA	1 cut(s)	541
MroNI	GCCGGC	1 cut(s)	23
MseI	TTAA	1 cut(s)	192
MspA1I	CMGCKG	1 cut(s)	281
MspI	CCGG	6 cut(s)	24, 37, 50, 67, 242, 542
MspR9I	CCNGG	2 cut(s)	222, 242
MvaI	CCWGG	1 cut(s)	222
MvnI	CGCG	1 cut(s)	376
NaeI	GCCGGC	1 cut(s)	25
NciI	CCSGG	1 cut(s)	242
NcoI	CCATGG	1 cut(s)	144
NdeII	GATC	3 cut(s)	46, 224, 404
NgoMIV	GCCGGC	1 cut(s)	23
NlaIII	CATG	2 cut(s)	148, 436
NlaIV	GGNNCC	4 cut(s)	48, 71, 226, 246
NmeAIII	GCCGAG	2 cut(s)	132, 502
NspV	TTCGAA	1 cut(s)	362
PdiI	GCCGGC	1 cut(s)	25
PfeI	GAWTC	4 cut(s)	63, 97, 123, 251
PleI	GAGTC	1 cut(s)	530
PpsI	GAGTC	1 cut(s)	530
Ppu21I	YACGTR	1 cut(s)	388
Psp6I	CCWGG	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	220
PspN4I	GGNNCC	4 cut(s)	48, 71, 226, 246
PsuI	RGATCY	3 cut(s)	46, 224, 404
RsaI	GTAC	1 cut(s)	56
RsaNI	GTAC	1 cut(s)	55
SaqAI	TTAA	1 cut(s)	192
Sau3AI	GATC	3 cut(s)	46, 224, 404
SchI	GAGTC	1 cut(s)	530
ScrFI	CCNGG	2 cut(s)	222, 242
SetI	ASST	3 cut(s)	34, 208, 390
SfuI	TTCGAA	1 cut(s)	362
Sse9I	AATT	1 cut(s)	547
SsiI	CCGC	6 cut(s)	165, 261, 279, 284, 291, 503
StyD4I	CCNGG	2 cut(s)	220, 240
StyI	CCWWGG	1 cut(s)	144
TaiI	ACGT	1 cut(s)	390
TaqI	TCGA	2 cut(s)	362, 368
TasI	AATT	1 cut(s)	547
TatI	WGTACW	1 cut(s)	54
TauI	GCSGC	5 cut(s)	167, 281, 287, 293, 505
TfiI	GAWTC	4 cut(s)	63, 97, 123, 251
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TseI	GCWGC	8 cut(s)	158, 161, 179, 263, 281, 287, 293, 296
TspDTI	ATGAA	3 cut(s)	17, 317, 421
TspGWI	ACGGA	1 cut(s)	217
XapI	RAATTY	1 cut(s)	547
XcmI	CCANNNNNNNNNTGG	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.