Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0012077

Physical Location & Seq

Genomic Coordinates Reverse (-)

33233379 .. 33234065

Gene Structure 687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1263200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGCCGATCCGTATAGCAACGTGCCCAAAATCCCAATTGACCAACCAACTACAACCTCCAATCCCAACGCCTTTATACAAATTCCTCCTACTCTTCCTAACCCTCCCACATCAACCCTACCTGACGATTTCTCCTCCTCCTCATCCCCGCGAGGCTCGACATCAGGATCGTCGAGGAGGCATCCGGTCTACCGGGGAATCCGGTGTCGGAGCGGGAAATGGGTGTCCGAGATTCGGGAGCCACGTAAGACTACAAGGATATGGCTTGGCACTTACCCTAAGCCGGAGATGGCTGCGGCTGCGTACGACGTGGCGGCGATCGCGCTGAAAGGGCCGGATACTCCCTTGAACTTCCCTAACTCGATTCTTACGTACCCAATACCGGCTTCCTCCGCCGCGAGTGATATAAGGTCTGCGGCGGCTAGGGCAGCACAGTCGAGGGCAGATATGTTGATTCCTCAGGAGAGGGAGAGCGGAGGGAGATCGGAGCCGGGTGGGGTTGATAATGAGGGTGGTGGTGGTGGGGTGGTGAGCCAGCAGCAGGAGGAGTATATGGATGAGGAGGAGCTTTTGAATATGCCGAATCTGCTGGTGGACATGGCGGAGGGAATGCTGGTGAGTCCGCCAAGGATTTCTTCCGACAATTCCCCTGGGAATTCCGACGGAGAAAATCTTTGGAGCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0043207 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

229

Amino Acids

24.44

Weight (kDa)

4.82

Isoelectric Point (pI)

59.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	62 - 111	5.2e-11	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12630 AT5G52020
fragaria_vesca	FvH4_7g28960
malus_domestica	MD01G1196300.v1.1 MD07G1263200.v1.1
prunus_persica	Prupe.2G289600_v2.0.a1
pyrus_communis	pycom01g20680 pycom07g24220
rosa_chinensis	RchiOBHm_Chr1g0376651
rosa_laevigata	RLG00000026584
rosa_multiflora	Rmu_co8365147.1_g000001 Rmu_sc0005594.1_g000003
rosa_roxburghii	Rroxscaffold_4G00281910
rosa_rugosa	Rorug01G0397100
rosa_samantha	Rh1AG414000 Rh1BG373400 Rh1CG387300 Rh1DG404400
rosa_wichuraiana	Rw1G036320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	213, 474
AccI	GTMKAC	1 cut(s)	189
AccII	CGCG	3 cut(s)	151, 323, 398
AclWI	GGATC	2 cut(s)	2, 175
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	81, 655
AfaI	GTAC	2 cut(s)	305, 374
AfiI	CCNNNNNNNGG	4 cut(s)	234, 283, 382, 541
AgsI	TTSAA	2 cut(s)	349, 574
AjiI	CACGTC	1 cut(s)	310
AjnI	CCWGG	1 cut(s)	649
AjuI	GAANNNNNNNTTGG	4 cut(s)	370, 402, 619, 651
AluBI	AGCT	2 cut(s)	568, 681
AluI	AGCT	2 cut(s)	568, 681
AlwI	GGATC	2 cut(s)	2, 175
AoxI	GGCC	2 cut(s)	3, 332
ApeKI	GCWGC	4 cut(s)	293, 299, 428, 538
ApoI	RAATTY	2 cut(s)	81, 655
AsiSI	GCGATCGC	1 cut(s)	321
AspLEI	GCGC	1 cut(s)	325
AspS9I	GGNCC	1 cut(s)	332
AsuC2I	CCSGG	2 cut(s)	194, 492
AsuHPI	GGTGA	2 cut(s)	541, 628
AxyI	CCTNAGG	1 cut(s)	459
BaeGI	GKGCMC	1 cut(s)	27
BbvI	GCAGC	4 cut(s)	280, 286, 440, 550
BccI	CCATC	1 cut(s)	283
BcgI	CGANNNNNNTGC	2 cut(s)	417, 451
BciT130I	CCWGG	1 cut(s)	651
BciVI	GTATCC	1 cut(s)	331
BcnI	CCSGG	2 cut(s)	194, 492
BfaI	CTAG	1 cut(s)	423
BfuI	GTATCC	1 cut(s)	331
BisI	GCNGC	9 cut(s)	294, 297, 300, 315, 396, 417, 420, 429, 539
BlsI	GCNGC	9 cut(s)	295, 298, 301, 316, 397, 418, 421, 430, 540
Bme1390I	CCNGG	3 cut(s)	194, 492, 651
BmgBI	CACGTC	1 cut(s)	310
BmgT120I	GGNCC	1 cut(s)	332
BmiI	GGNNCC	2 cut(s)	240, 489
BmrFI	CCNGG	3 cut(s)	194, 492, 651
BmsI	GCATC	1 cut(s)	190
Bpu10I	CCTNAGC	1 cut(s)	279
BpuMI	CCSGG	2 cut(s)	194, 492
BsaAI	YACGTR	2 cut(s)	245, 372
BsaJI	CCNNGG	4 cut(s)	193, 626, 649, 650
BsaWI	WCCGGW	2 cut(s)	184, 201
BsaXI	ACNNNNNCTCC	2 cut(s)	116, 146
Bsc4I	CCNNNNNNNGG	4 cut(s)	234, 283, 382, 541
Bse118I	RCCGGY	1 cut(s)	382
Bse21I	CCTNAGG	1 cut(s)	459
BseBI	CCWGG	1 cut(s)	651
BseDI	CCNNGG	4 cut(s)	193, 626, 649, 650
BseGI	GGATG	3 cut(s)	143, 181, 562
BseLI	CCNNNNNNNGG	4 cut(s)	234, 283, 382, 541
BseMII	CTCAG	1 cut(s)	473
BseRI	GAGGAG	7 cut(s)	124, 127, 130, 190, 560, 575, 578
BseSI	GKGCMC	1 cut(s)	27
BseXI	GCAGC	4 cut(s)	280, 286, 440, 550
Bsh1236I	CGCG	3 cut(s)	151, 323, 398
Bsh1285I	CGRYCG	1 cut(s)	321
BshFI	GGCC	2 cut(s)	5, 334
BsiEI	CGRYCG	1 cut(s)	321
BsiSI	CCGG	7 cut(s)	185, 193, 202, 284, 335, 383, 491
BsiWI	CGTACG	1 cut(s)	303
BslI	CCNNNNNNNGG	4 cut(s)	234, 283, 382, 541
BsmI	GAATGC	1 cut(s)	615
BsnI	GGCC	2 cut(s)	5, 334
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp143I	GATC	4 cut(s)	7, 167, 318, 482
BspANI	GGCC	2 cut(s)	5, 334
BspCNI	CTCAG	1 cut(s)	472
BspFNI	CGCG	3 cut(s)	151, 323, 398
BspLI	GGNNCC	2 cut(s)	240, 489
BspPI	GGATC	2 cut(s)	2, 175
BsrBI	CCGCTC	2 cut(s)	213, 474
BsrFI	RCCGGY	1 cut(s)	382
BssAI	RCCGGY	1 cut(s)	382
BssECI	CCNNGG	4 cut(s)	193, 626, 649, 650
BssMI	GATC	4 cut(s)	7, 167, 318, 482
BssT1I	CCWWGG	1 cut(s)	626
Bst2UI	CCWGG	1 cut(s)	651
Bst4CI	ACNGT	1 cut(s)	435
Bst6I	CTCTTC	1 cut(s)	99
BstBAI	YACGTR	2 cut(s)	245, 372
BstC8I	GCNNGC	1 cut(s)	536
BstDEI	CTNAG	2 cut(s)	279, 459
BstF5I	GGATG	3 cut(s)	143, 181, 562
BstFNI	CGCG	3 cut(s)	151, 323, 398
BstHHI	GCGC	1 cut(s)	325
BstKTI	GATC	4 cut(s)	10, 170, 321, 485
BstMBI	GATC	4 cut(s)	7, 167, 318, 482
BstMCI	CGRYCG	1 cut(s)	321
BstMWI	GCNNNNNNNGC	7 cut(s)	299, 320, 331, 392, 425, 428, 586
BstNI	CCWGG	1 cut(s)	651
BstSCI	CCNGG	3 cut(s)	192, 490, 649
BstSLI	GKGCMC	1 cut(s)	27
BstSNI	TACGTA	1 cut(s)	372
BstUI	CGCG	3 cut(s)	151, 323, 398
BstV1I	GCAGC	4 cut(s)	280, 286, 440, 550
Bsu36I	CCTNAGG	1 cut(s)	459
BsuI	GTATCC	1 cut(s)	331
BsuRI	GGCC	2 cut(s)	5, 334
BtrI	CACGTC	1 cut(s)	310
BtsCI	GGATG	3 cut(s)	143, 181, 562
Cac8I	GCNNGC	1 cut(s)	536
CfoI	GCGC	1 cut(s)	325
Cfr10I	RCCGGY	1 cut(s)	382
Cfr13I	GGNCC	1 cut(s)	332
Csp6I	GTAC	2 cut(s)	304, 373
CviAII	CATG	1 cut(s)	598
CviQI	GTAC	2 cut(s)	304, 373
DdeI	CTNAG	2 cut(s)	279, 459
DpnI	GATC	4 cut(s)	9, 169, 320, 484
DpnII	GATC	4 cut(s)	7, 167, 318, 482
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	99
EciI	GGCGGA	3 cut(s)	382, 612, 617
Eco105I	TACGTA	1 cut(s)	372
Eco130I	CCWWGG	1 cut(s)	626
Eco81I	CCTNAGG	1 cut(s)	459
EcoRI	GAATTC	1 cut(s)	655
EcoRII	CCWGG	1 cut(s)	649
EcoT14I	CCWWGG	1 cut(s)	626
ErhI	CCWWGG	1 cut(s)	626
FaeI	CATG	1 cut(s)	601
FaiI	YATR	9 cut(s)	15, 77, 262, 407, 449, 552, 554, 578, 599
FalI	AAGNNNNNCTT	2 cut(s)	619, 651
FatI	CATG	1 cut(s)	597
FauI	CCCGC	2 cut(s)	156, 206
FblI	GTMKAC	1 cut(s)	189
Fnu4HI	GCNGC	9 cut(s)	294, 297, 300, 315, 396, 417, 420, 429, 539
FokI	GGATG	3 cut(s)	130, 168, 569
Fsp4HI	GCNGC	9 cut(s)	294, 297, 300, 315, 396, 417, 420, 429, 539
FspBI	CTAG	1 cut(s)	423
GlaI	GCGC	1 cut(s)	324
GluI	GCNGC	9 cut(s)	294, 297, 300, 315, 396, 417, 420, 429, 539
HaeIII	GGCC	2 cut(s)	5, 334
HapII	CCGG	7 cut(s)	185, 193, 202, 284, 335, 383, 491
HhaI	GCGC	1 cut(s)	325
Hin1II	CATG	1 cut(s)	601
Hin6I	GCGC	1 cut(s)	323
HinP1I	GCGC	1 cut(s)	323
HinfI	GANTC	6 cut(s)	198, 232, 364, 454, 583, 619
HpaII	CCGG	7 cut(s)	185, 193, 202, 284, 335, 383, 491
HphI	GGTGA	2 cut(s)	541, 628
Hpy166II	GTNNAC	2 cut(s)	190, 595
Hpy188I	TCNGA	5 cut(s)	210, 229, 487, 640, 661
Hpy188III	TCNNGA	3 cut(s)	165, 236, 461
Hpy8I	GTNNAC	2 cut(s)	190, 595
Hpy99I	CGWCG	3 cut(s)	175, 311, 665
HpyCH4III	ACNGT	1 cut(s)	435
HpyCH4IV	ACGT	4 cut(s)	21, 244, 309, 371
HpyF10VI	GCNNNNNNNGC	7 cut(s)	299, 320, 331, 392, 425, 428, 586
HpyF3I	CTNAG	2 cut(s)	279, 459
HpySE526I	ACGT	4 cut(s)	21, 244, 309, 371
Hsp92II	CATG	1 cut(s)	601
HspAI	GCGC	1 cut(s)	323
Kzo9I	GATC	4 cut(s)	7, 167, 318, 482
LmnI	GCTCC	5 cut(s)	210, 238, 487, 565, 678
Lsp1109I	GCAGC	4 cut(s)	280, 286, 440, 550
LweI	GCATC	1 cut(s)	190
MaeI	CTAG	1 cut(s)	423
MaeII	ACGT	4 cut(s)	21, 244, 309, 371
MalI	GATC	4 cut(s)	9, 169, 320, 484
MbiI	CCGCTC	2 cut(s)	213, 474
MboI	GATC	4 cut(s)	7, 167, 318, 482
MboII	GAAGA	2 cut(s)	86, 627
MfeI	CAATTG	1 cut(s)	36
MhlI	GDGCHC	1 cut(s)	27
MluCI	AATT	4 cut(s)	36, 81, 643, 655
MlyI	GAGTC	1 cut(s)	628
MmeI	TCCRAC	3 cut(s)	188, 663, 684
MseI	TTAA	1 cut(s)	685
MspI	CCGG	7 cut(s)	185, 193, 202, 284, 335, 383, 491
MspR9I	CCNGG	3 cut(s)	194, 492, 651
MunI	CAATTG	1 cut(s)	36
Mva1269I	GAATGC	1 cut(s)	615
MvaI	CCWGG	1 cut(s)	651
MvnI	CGCG	3 cut(s)	151, 323, 398
MwoI	GCNNNNNNNGC	7 cut(s)	299, 320, 331, 392, 425, 428, 586
NciI	CCSGG	2 cut(s)	194, 492
NdeII	GATC	4 cut(s)	7, 167, 318, 482
NlaIII	CATG	1 cut(s)	601
NlaIV	GGNNCC	2 cut(s)	240, 489
PasI	CCCWGGG	1 cut(s)	650
PcsI	WCGNNNNNNNCGW	2 cut(s)	241, 368
PctI	GAATGC	1 cut(s)	615
PfeI	GAWTC	5 cut(s)	198, 232, 364, 454, 583
Pfl23II	CGTACG	1 cut(s)	303
PkrI	GCNGC	9 cut(s)	295, 298, 301, 316, 397, 418, 421, 430, 540
Ple19I	CGATCG	1 cut(s)	321
PleI	GAGTC	1 cut(s)	627
PpsI	GAGTC	1 cut(s)	627
Ppu21I	YACGTR	2 cut(s)	245, 372
Psp6I	CCWGG	1 cut(s)	649
PspGI	CCWGG	1 cut(s)	649
PspLI	CGTACG	1 cut(s)	303
PspN4I	GGNNCC	2 cut(s)	240, 489
PspPI	GGNCC	1 cut(s)	332
PvuI	CGATCG	1 cut(s)	321
RgaI	GCGATCGC	1 cut(s)	321
RsaI	GTAC	2 cut(s)	305, 374
RsaNI	GTAC	2 cut(s)	304, 373
SaqAI	TTAA	1 cut(s)	685
SatI	GCNGC	9 cut(s)	294, 297, 300, 315, 396, 417, 420, 429, 539
Sau3AI	GATC	4 cut(s)	7, 167, 318, 482
Sau96I	GGNCC	1 cut(s)	332
SchI	GAGTC	1 cut(s)	628
ScrFI	CCNGG	3 cut(s)	194, 492, 651
SduI	GDGCHC	1 cut(s)	27
SetI	ASST	9 cut(s)	24, 59, 124, 247, 312, 374, 413, 570, 683
SfaAI	GCGATCGC	1 cut(s)	321
SfaNI	GCATC	1 cut(s)	190
SgfI	GCGATCGC	1 cut(s)	321
SnaBI	TACGTA	1 cut(s)	372
Sse9I	AATT	4 cut(s)	36, 81, 643, 655
SspMI	CTAG	1 cut(s)	423
StyD4I	CCNGG	3 cut(s)	192, 490, 649
StyI	CCWWGG	1 cut(s)	626
TaaI	ACNGT	1 cut(s)	435
TaiI	ACGT	4 cut(s)	24, 247, 312, 374
TaqI	TCGA	4 cut(s)	158, 173, 362, 437
TasI	AATT	4 cut(s)	36, 81, 643, 655
TauI	GCSGC	5 cut(s)	299, 317, 398, 419, 422
TfiI	GAWTC	5 cut(s)	198, 232, 364, 454, 583
Tru1I	TTAA	1 cut(s)	685
Tru9I	TTAA	1 cut(s)	685
TseI	GCWGC	4 cut(s)	293, 299, 428, 538
TspGWI	ACGGA	1 cut(s)	678
XapI	RAATTY	2 cut(s)	81, 655
XmiI	GTMKAC	1 cut(s)	189
XspI	CTAG	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.