Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0012077

Physical Location & Seq

Genomic Coordinates Reverse (-)

50636197 .. 50636718

Gene Structure 522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0397100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGCGAGCAAGCAACTCATCCTCATCGCGTCATCTTTCCTCCTCATCGCATTGGCCTTCTTCCCTTCCACAACCGCCACCGCGTACCCTTCAAAGCCCGAAGTGCATGTGGTTGTGGAAGGCATGGTCTACTGCCAGAGCTGTGACTACAGTGGATGGTCCTTAACTGGAGCTACACCACTCCCTTCGGCTAAAGTCAGCGTTGTCTGCAAAAACAACATAGGCCAAGTTGGTTACTACAAGACTTTCCAAGCAAATGCTAATGGCTATGTGTATGCTGAGCTAGAAGGCAACAAAATGAACCGTGTATTGGATTATCCCCTTCAGAATTGCCTAGTGAAGTTAGTCTCTTCTCCTCTTCAGAAATGCAACCTTGCTACCAATGTCAATTTCGGCCTTGATGGAGCGCATCTCCGGTCTGAAGGAAAGAGTCACACAAGTCTGAATTACAAGGCTGTCATATATGCCGCAGGGCCCTTAGCTTTCCGTCCTGCTCATTGCCCTTACACTACTCACGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0043207 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

173

Amino Acids

18.75

Weight (kDa)

8.7

Isoelectric Point (pI)

43.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pollen_Ole_e_1	PF01190	39 - 135	1.3e-23	Pollen protein Ole e 1 like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12630 AT5G52020
fragaria_vesca	FvH4_7g28960
malus_domestica	MD01G1196300.v1.1 MD07G1263200.v1.1
prunus_persica	Prupe.2G289600_v2.0.a1
pyrus_communis	pycom01g20680 pycom07g24220
rosa_chinensis	RchiOBHm_Chr1g0376651
rosa_laevigata	RLG00000026584
rosa_multiflora	Rmu_co8365147.1_g000001 Rmu_sc0005594.1_g000003
rosa_roxburghii	Rroxscaffold_4G00281910
rosa_rugosa	Rorug01G0397100
rosa_samantha	Rh1AG414000 Rh1BG373400 Rh1CG387300 Rh1DG404400
rosa_wichuraiana	Rw1G036320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	129
AccII	CGCG	2 cut(s)	29, 83
AciI	CCGC	3 cut(s)	75, 81, 468
AcuI	CTGAAG	3 cut(s)	308, 344, 441
AfaI	GTAC	1 cut(s)	86
AfiI	CCNNNNNNNGG	1 cut(s)	310
AgsI	TTSAA	1 cut(s)	93
AjuI	GAANNNNNNNTTGG	4 cut(s)	293, 325, 374, 406
AluBI	AGCT	4 cut(s)	141, 173, 283, 482
AluI	AGCT	4 cut(s)	141, 173, 283, 482
Alw26I	GTCTC	1 cut(s)	352
AoxI	GGCC	4 cut(s)	54, 223, 394, 473
ApaI	GGGCCC	1 cut(s)	477
AspLEI	GCGC	1 cut(s)	409
AspS9I	GGNCC	3 cut(s)	159, 473, 474
AvaII	GGWCC	1 cut(s)	159
BaeGI	GKGCMC	1 cut(s)	477
BanII	GRGCYC	1 cut(s)	477
BccI	CCATC	2 cut(s)	150, 395
BcoDI	GTCTC	1 cut(s)	352
BfaI	CTAG	2 cut(s)	284, 335
BfmI	CTRYAG	1 cut(s)	148
BisI	GCNGC	1 cut(s)	468
BlpI	GCTNAGC	1 cut(s)	279
BlsI	GCNGC	1 cut(s)	469
Bme18I	GGWCC	1 cut(s)	159
BmgT120I	GGNCC	3 cut(s)	159, 473, 474
BmiI	GGNNCC	1 cut(s)	475
BmsI	GCATC	1 cut(s)	418
BplI	GAGNNNNNCTC	2 cut(s)	396, 428
BpmI	CTGGAG	1 cut(s)	189
Bpu10I	CCTNAGC	1 cut(s)	478
Bpu1102I	GCTNAGC	1 cut(s)	279
BsaWI	WCCGGW	1 cut(s)	414
Bsc4I	CCNNNNNNNGG	1 cut(s)	310
Bse1I	ACTGG	1 cut(s)	172
Bse3DI	GCAATG	1 cut(s)	496
BseGI	GGATG	2 cut(s)	18, 161
BseLI	CCNNNNNNNGG	1 cut(s)	310
BseMI	GCAATG	1 cut(s)	496
BseMII	CTCAG	1 cut(s)	270
BseNI	ACTGG	1 cut(s)	172
BseRI	GAGGAG	2 cut(s)	32, 345
BseSI	GKGCMC	1 cut(s)	477
Bsh1236I	CGCG	2 cut(s)	29, 83
BshFI	GGCC	4 cut(s)	56, 225, 396, 475
BsiSI	CCGG	1 cut(s)	415
BslI	CCNNNNNNNGG	1 cut(s)	310
BsmAI	GTCTC	1 cut(s)	352
BsnI	GGCC	4 cut(s)	56, 225, 396, 475
Bsp120I	GGGCCC	1 cut(s)	473
Bsp1286I	GDGCHC	1 cut(s)	477
Bsp1720I	GCTNAGC	1 cut(s)	279
BspACI	CCGC	3 cut(s)	75, 81, 468
BspANI	GGCC	4 cut(s)	56, 225, 396, 475
BspCNI	CTCAG	1 cut(s)	271
BspFNI	CGCG	2 cut(s)	29, 83
BspLI	GGNNCC	1 cut(s)	475
BsrDI	GCAATG	1 cut(s)	496
BsrI	ACTGG	1 cut(s)	172
Bst4CI	ACNGT	2 cut(s)	152, 305
Bst6I	CTCTTC	2 cut(s)	355, 363
BstC8I	GCNNGC	2 cut(s)	7, 11
BstDEI	CTNAG	2 cut(s)	279, 478
BstF5I	GGATG	2 cut(s)	18, 161
BstFNI	CGCG	2 cut(s)	29, 83
BstHHI	GCGC	1 cut(s)	409
BstMAI	GTCTC	1 cut(s)	352
BstMWI	GCNNNNNNNGC	2 cut(s)	103, 207
BstNSI	RCATGY	1 cut(s)	110
BstSFI	CTRYAG	1 cut(s)	148
BstSLI	GKGCMC	1 cut(s)	477
BstUI	CGCG	2 cut(s)	29, 83
BsuRI	GGCC	4 cut(s)	56, 225, 396, 475
BtgZI	GCGATG	2 cut(s)	10, 31
BtsCI	GGATG	2 cut(s)	18, 161
BtsIMutI	CAGTG	1 cut(s)	157
Cac8I	GCNNGC	2 cut(s)	7, 11
CfoI	GCGC	1 cut(s)	409
Cfr13I	GGNCC	3 cut(s)	159, 473, 474
CseI	GACGC	1 cut(s)	18
Csp6I	GTAC	1 cut(s)	85
CviAII	CATG	2 cut(s)	107, 124
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	2 cut(s)	279, 478
Eam1104I	CTCTTC	2 cut(s)	355, 363
EarI	CTCTTC	2 cut(s)	355, 363
Eco24I	GRGCYC	1 cut(s)	477
Eco47I	GGWCC	1 cut(s)	159
Eco57I	CTGAAG	3 cut(s)	308, 344, 441
EcoO109I	RGGNCCY	2 cut(s)	473, 474
EcoT38I	GRGCYC	1 cut(s)	477
FaeI	CATG	2 cut(s)	110, 127
FaiI	YATR	8 cut(s)	108, 125, 221, 270, 276, 461, 463, 465
FatI	CATG	2 cut(s)	106, 123
FblI	GTMKAC	1 cut(s)	129
Fnu4HI	GCNGC	1 cut(s)	468
FokI	GGATG	2 cut(s)	5, 168
FriOI	GRGCYC	1 cut(s)	477
Fsp4HI	GCNGC	1 cut(s)	468
FspBI	CTAG	2 cut(s)	284, 335
GlaI	GCGC	1 cut(s)	408
GluI	GCNGC	1 cut(s)	468
GsuI	CTGGAG	1 cut(s)	189
HaeIII	GGCC	4 cut(s)	56, 225, 396, 475
HapII	CCGG	1 cut(s)	415
HgaI	GACGC	1 cut(s)	18
HhaI	GCGC	1 cut(s)	409
Hin1II	CATG	2 cut(s)	110, 127
Hin6I	GCGC	1 cut(s)	407
HinP1I	GCGC	1 cut(s)	407
HinfI	GANTC	1 cut(s)	430
HpaII	CCGG	1 cut(s)	415
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	4 cut(s)	327, 363, 421, 444
Hpy188III	TCNNGA	1 cut(s)	515
Hpy8I	GTNNAC	1 cut(s)	130
HpyAV	CCTTC	8 cut(s)	67, 75, 99, 113, 195, 281, 332, 416
HpyCH4III	ACNGT	2 cut(s)	152, 305
HpyCH4V	TGCA	3 cut(s)	106, 210, 369
HpyF10VI	GCNNNNNNNGC	2 cut(s)	103, 207
HpyF3I	CTNAG	2 cut(s)	279, 478
Hsp92II	CATG	2 cut(s)	110, 127
HspAI	GCGC	1 cut(s)	407
LmnI	GCTCC	2 cut(s)	170, 404
LpnPI	CCDG	5 cut(s)	149, 153, 428, 456, 504
LweI	GCATC	1 cut(s)	418
MaeI	CTAG	2 cut(s)	284, 335
MaeIII	GTNAC	3 cut(s)	143, 233, 431
MboII	GAAGA	3 cut(s)	52, 342, 350
MhlI	GDGCHC	1 cut(s)	477
MluCI	AATT	3 cut(s)	328, 388, 445
MlyI	GAGTC	1 cut(s)	439
MnlI	CCTC	4 cut(s)	32, 50, 53, 366
MseI	TTAA	2 cut(s)	164, 520
MspI	CCGG	1 cut(s)	415
MvnI	CGCG	2 cut(s)	29, 83
MwoI	GCNNNNNNNGC	2 cut(s)	103, 207
NlaIII	CATG	2 cut(s)	110, 127
NlaIV	GGNNCC	1 cut(s)	475
NmuCI	GTSAC	2 cut(s)	143, 431
NspI	RCATGY	1 cut(s)	110
PkrI	GCNGC	1 cut(s)	469
PleI	GAGTC	1 cut(s)	438
PpsI	GAGTC	1 cut(s)	438
PspN4I	GGNNCC	1 cut(s)	475
PspOMI	GGGCCC	1 cut(s)	473
PspPI	GGNCC	3 cut(s)	159, 473, 474
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
SaqAI	TTAA	2 cut(s)	164, 520
SatI	GCNGC	1 cut(s)	468
Sau96I	GGNCC	3 cut(s)	159, 473, 474
SchI	GAGTC	1 cut(s)	439
SduI	GDGCHC	1 cut(s)	477
SetI	ASST	5 cut(s)	143, 175, 285, 375, 484
SfaNI	GCATC	1 cut(s)	418
SfcI	CTRYAG	1 cut(s)	148
SinI	GGWCC	1 cut(s)	159
Sse9I	AATT	3 cut(s)	328, 388, 445
SsiI	CCGC	3 cut(s)	75, 81, 468
SspMI	CTAG	2 cut(s)	284, 335
TaaI	ACNGT	2 cut(s)	152, 305
TasI	AATT	3 cut(s)	328, 388, 445
TauI	GCSGC	1 cut(s)	470
Tru1I	TTAA	2 cut(s)	164, 520
Tru9I	TTAA	2 cut(s)	164, 520
TscAI	CASTG	1 cut(s)	157
TseFI	GTSAC	2 cut(s)	143, 431
Tsp45I	GTSAC	2 cut(s)	143, 431
TspDTI	ATGAA	1 cut(s)	314
TspGWI	ACGGA	1 cut(s)	476
TspRI	CASTG	1 cut(s)	157
VpaK11BI	GGWCC	1 cut(s)	159
XceI	RCATGY	1 cut(s)	110
XmiI	GTMKAC	1 cut(s)	129
XspI	CTAG	2 cut(s)	284, 335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.