Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0012077

Physical Location & Seq

Genomic Coordinates Reverse (-)

19012711 .. 19013451

Gene Structure 741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g20680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGCACATAAAAATTGTATGTAGATTATACCTTATGGCCAATCCGTATAGCAGCGTGCCCAAAACCCCAGTTGACCAACCAACTACAACCTCCAATCCCAATCCCTTTATACAAATTCCTCCGACTCCTCCTAACCCTCCCACATCAACCCTACCTGACGATTCCTCCTCCTCCTCATCCCCGATACTGGGCGTTCGGTCCCCATCGGGAGGCTCGACATCAGGCTCGCCGAGGGGGCATACGGTCTACCGGGGAATCCGGTGTCGGAGCGGGAAATGGGTGTCCGAGATTCGGGAGCCACGTAAGACTACAAGGATATGGCTTGGCACTTACCCTGAGCCGGAGATGGCGGCGGCTGCGTACGACGTGGCGGCGATCGCGCTGAAAGGGCCAAATACTCCCTTAAACTTCCCCAACTCGATTTTTACGTACCCGATACCGGCTTCCTCCGCCGCGAGTGACATACGATCTGCGGCCGCTAGGGCAGCACAGTCGAGGGCAAATATGTTAGTTCCCCGGGAGAGGGAGAGCGGAGGGAGATCAGAGCCGGGTGGTGTTGATAATGAGGGTGTTGGTGGGGTGGTGGGCCAGCAGGAGGAGGAGTTTATGGATGAGGAGGCGCTTTTGAATATGCCGAATCTGCTGGTGGACATGGCGGAGGGAATGCTGGTGAGTCCGCCGAGGATCTCTTCCGACAATTCGCCTGAAAATTCCAACGGAGAAAATCTTTGGAACTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0043207 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

247

Amino Acids

26.36

Weight (kDa)

5.32

Isoelectric Point (pI)

61.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	81 - 130	1.1e-10	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12630 AT5G52020
fragaria_vesca	FvH4_7g28960
malus_domestica	MD01G1196300.v1.1 MD07G1263200.v1.1
prunus_persica	Prupe.2G289600_v2.0.a1
pyrus_communis	pycom01g20680 pycom07g24220
rosa_chinensis	RchiOBHm_Chr1g0376651
rosa_laevigata	RLG00000026584
rosa_multiflora	Rmu_co8365147.1_g000001 Rmu_sc0005594.1_g000003
rosa_roxburghii	Rroxscaffold_4G00281910
rosa_rugosa	Rorug01G0397100
rosa_samantha	Rh1AG414000 Rh1BG373400 Rh1CG387300 Rh1DG404400
rosa_wichuraiana	Rw1G036320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	270, 531
AccI	GTMKAC	1 cut(s)	246
AccII	CGCG	2 cut(s)	380, 455
AclWI	GGATC	1 cut(s)	692
AcoI	YGGCCR	2 cut(s)	36, 474
AcsI	RAATTY	2 cut(s)	114, 709
AfaI	GTAC	2 cut(s)	362, 431
AfiI	CCNNNNNNNGG	9 cut(s)	187, 188, 209, 291, 340, 439, 522, 523, 595
AgsI	TTSAA	1 cut(s)	628
AjiI	CACGTC	1 cut(s)	367
AlwI	GGATC	1 cut(s)	692
Ama87I	CYCGRG	1 cut(s)	516
AoxI	GGCC	4 cut(s)	36, 389, 474, 586
ApeKI	GCWGC	3 cut(s)	51, 356, 485
ApoI	RAATTY	2 cut(s)	114, 709
AsiSI	GCGATCGC	1 cut(s)	378
AspLEI	GCGC	2 cut(s)	382, 622
AspS9I	GGNCC	3 cut(s)	198, 389, 586
AsuC2I	CCSGG	4 cut(s)	251, 517, 518, 549
AsuHPI	GGTGA	1 cut(s)	682
AvaI	CYCGRG	1 cut(s)	516
AvaII	GGWCC	1 cut(s)	198
BaeGI	GKGCMC	1 cut(s)	60
BalI	TGGCCA	1 cut(s)	38
BbvI	GCAGC	3 cut(s)	63, 343, 497
BccI	CCATC	2 cut(s)	211, 340
BcgI	CGANNNNNNTGC	2 cut(s)	474, 508
BcnI	CCSGG	4 cut(s)	251, 517, 518, 549
BfaI	CTAG	1 cut(s)	480
BfoI	RGCGCY	1 cut(s)	623
BglI	GCCNNNNNGGC	2 cut(s)	235, 482
BisI	GCNGC	9 cut(s)	52, 351, 354, 357, 372, 453, 474, 477, 486
BlsI	GCNGC	9 cut(s)	53, 352, 355, 358, 373, 454, 475, 478, 487
Bme1390I	CCNGG	4 cut(s)	251, 517, 518, 549
Bme18I	GGWCC	1 cut(s)	198
BmeT110I	CYCGRG	1 cut(s)	516
BmgBI	CACGTC	1 cut(s)	367
BmgT120I	GGNCC	3 cut(s)	198, 389, 586
BmiI	GGNNCC	2 cut(s)	200, 297
BmrFI	CCNGG	4 cut(s)	251, 517, 518, 549
BmrI	ACTGGG	2 cut(s)	62, 197
BmuI	ACTGGG	2 cut(s)	62, 197
Bpu10I	CCTNAGC	1 cut(s)	336
BpuMI	CCSGG	4 cut(s)	251, 517, 518, 549
BsaAI	YACGTR	2 cut(s)	302, 429
BsaJI	CCNNGG	5 cut(s)	230, 250, 515, 516, 680
BsaWI	WCCGGW	1 cut(s)	258
BsaXI	ACNNNNNCTCC	4 cut(s)	149, 179, 587, 617
Bsc4I	CCNNNNNNNGG	9 cut(s)	187, 188, 209, 291, 340, 439, 522, 523, 595
Bse118I	RCCGGY	1 cut(s)	439
Bse1I	ACTGG	2 cut(s)	68, 192
BseDI	CCNNGG	5 cut(s)	230, 250, 515, 516, 680
BseGI	GGATG	2 cut(s)	176, 616
BseLI	CCNNNNNNNGG	9 cut(s)	187, 188, 209, 291, 340, 439, 522, 523, 595
BseMII	CTCAG	1 cut(s)	327
BseNI	ACTGG	2 cut(s)	68, 192
BseRI	GAGGAG	7 cut(s)	117, 157, 160, 163, 611, 614, 629
BseSI	GKGCMC	1 cut(s)	60
BseX3I	CGGCCG	1 cut(s)	474
BseXI	GCAGC	3 cut(s)	63, 343, 497
Bsh1236I	CGCG	2 cut(s)	380, 455
Bsh1285I	CGRYCG	2 cut(s)	378, 477
BshFI	GGCC	4 cut(s)	38, 391, 476, 588
BsiEI	CGRYCG	2 cut(s)	378, 477
BsiHKCI	CYCGRG	1 cut(s)	516
BsiSI	CCGG	6 cut(s)	250, 259, 341, 440, 517, 548
BsiWI	CGTACG	1 cut(s)	360
BslFI	GGGAC	1 cut(s)	184
BslI	CCNNNNNNNGG	9 cut(s)	187, 188, 209, 291, 340, 439, 522, 523, 595
BsmFI	GGGAC	1 cut(s)	184
BsmI	GAATGC	1 cut(s)	669
BsnI	GGCC	4 cut(s)	38, 391, 476, 588
BsoBI	CYCGRG	1 cut(s)	516
Bsp1286I	GDGCHC	1 cut(s)	60
Bsp143I	GATC	4 cut(s)	375, 467, 539, 684
BspANI	GGCC	4 cut(s)	38, 391, 476, 588
BspCNI	CTCAG	1 cut(s)	328
BspFNI	CGCG	2 cut(s)	380, 455
BspLI	GGNNCC	2 cut(s)	200, 297
BspPI	GGATC	1 cut(s)	692
BsrBI	CCGCTC	2 cut(s)	270, 531
BsrFI	RCCGGY	1 cut(s)	439
BsrI	ACTGG	2 cut(s)	68, 192
BssAI	RCCGGY	1 cut(s)	439
BssECI	CCNNGG	5 cut(s)	230, 250, 515, 516, 680
BssMI	GATC	4 cut(s)	375, 467, 539, 684
Bst4CI	ACNGT	2 cut(s)	244, 492
Bst6I	CTCTTC	1 cut(s)	694
BstBAI	YACGTR	2 cut(s)	302, 429
BstC8I	GCNNGC	3 cut(s)	56, 227, 590
BstDEI	CTNAG	1 cut(s)	336
BstF5I	GGATG	2 cut(s)	176, 616
BstFNI	CGCG	2 cut(s)	380, 455
BstH2I	RGCGCY	1 cut(s)	623
BstHHI	GCGC	2 cut(s)	382, 622
BstKTI	GATC	4 cut(s)	378, 470, 542, 687
BstMBI	GATC	4 cut(s)	375, 467, 539, 684
BstMCI	CGRYCG	2 cut(s)	378, 477
BstMWI	GCNNNNNNNGC	8 cut(s)	235, 356, 377, 388, 449, 482, 485, 640
BstSCI	CCNGG	4 cut(s)	249, 515, 516, 547
BstSLI	GKGCMC	1 cut(s)	60
BstSNI	TACGTA	1 cut(s)	429
BstUI	CGCG	2 cut(s)	380, 455
BstV1I	GCAGC	3 cut(s)	63, 343, 497
BstX2I	RGATCY	1 cut(s)	684
BstYI	RGATCY	1 cut(s)	684
BstZI	CGGCCG	1 cut(s)	474
BsuRI	GGCC	4 cut(s)	38, 391, 476, 588
BtrI	CACGTC	1 cut(s)	367
BtsCI	GGATG	2 cut(s)	176, 616
Cac8I	GCNNGC	3 cut(s)	56, 227, 590
CciNI	GCGGCCGC	1 cut(s)	474
CfoI	GCGC	2 cut(s)	382, 622
Cfr10I	RCCGGY	1 cut(s)	439
Cfr13I	GGNCC	3 cut(s)	198, 389, 586
Cfr9I	CCCGGG	1 cut(s)	516
Csp6I	GTAC	2 cut(s)	361, 430
CviAII	CATG	1 cut(s)	652
CviQI	GTAC	2 cut(s)	361, 430
DdeI	CTNAG	1 cut(s)	336
DpnI	GATC	4 cut(s)	377, 469, 541, 686
DpnII	GATC	4 cut(s)	375, 467, 539, 684
EaeI	YGGCCR	2 cut(s)	36, 474
EagI	CGGCCG	1 cut(s)	474
Eam1104I	CTCTTC	1 cut(s)	694
EarI	CTCTTC	1 cut(s)	694
EciI	GGCGGA	3 cut(s)	439, 666, 671
EclXI	CGGCCG	1 cut(s)	474
Eco105I	TACGTA	1 cut(s)	429
Eco47I	GGWCC	1 cut(s)	198
Eco52I	CGGCCG	1 cut(s)	474
Eco88I	CYCGRG	1 cut(s)	516
FaeI	CATG	1 cut(s)	655
FaqI	GGGAC	1 cut(s)	184
FatI	CATG	1 cut(s)	651
FauI	CCCGC	1 cut(s)	263
FblI	GTMKAC	1 cut(s)	246
Fnu4HI	GCNGC	9 cut(s)	52, 351, 354, 357, 372, 453, 474, 477, 486
FokI	GGATG	2 cut(s)	163, 623
Fsp4HI	GCNGC	9 cut(s)	52, 351, 354, 357, 372, 453, 474, 477, 486
FspBI	CTAG	1 cut(s)	480
GlaI	GCGC	2 cut(s)	381, 621
GluI	GCNGC	9 cut(s)	52, 351, 354, 357, 372, 453, 474, 477, 486
HaeII	RGCGCY	1 cut(s)	623
HaeIII	GGCC	4 cut(s)	38, 391, 476, 588
HapII	CCGG	6 cut(s)	250, 259, 341, 440, 517, 548
HhaI	GCGC	2 cut(s)	382, 622
Hin1II	CATG	1 cut(s)	655
Hin6I	GCGC	2 cut(s)	380, 620
HinP1I	GCGC	2 cut(s)	380, 620
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HinfI	GANTC	6 cut(s)	124, 161, 255, 289, 637, 673
HpaII	CCGG	6 cut(s)	250, 259, 341, 440, 517, 548
HphI	GGTGA	1 cut(s)	682
Hpy166II	GTNNAC	3 cut(s)	73, 247, 649
Hpy188I	TCNGA	5 cut(s)	123, 267, 286, 544, 694
Hpy188III	TCNNGA	2 cut(s)	207, 293
Hpy8I	GTNNAC	3 cut(s)	73, 247, 649
Hpy99I	CGWCG	1 cut(s)	368
HpyCH4III	ACNGT	2 cut(s)	244, 492
HpyCH4IV	ACGT	3 cut(s)	301, 366, 428
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	8 cut(s)	235, 356, 377, 388, 449, 482, 485, 640
HpyF3I	CTNAG	1 cut(s)	336
HpySE526I	ACGT	3 cut(s)	301, 366, 428
Hsp92II	CATG	1 cut(s)	655
HspAI	GCGC	2 cut(s)	380, 620
Kzo9I	GATC	4 cut(s)	375, 467, 539, 684
LmnI	GCTCC	2 cut(s)	267, 295
Lsp1109I	GCAGC	3 cut(s)	63, 343, 497
MaeI	CTAG	1 cut(s)	480
MaeII	ACGT	3 cut(s)	301, 366, 428
MaeIII	GTNAC	1 cut(s)	458
MalI	GATC	4 cut(s)	377, 469, 541, 686
MbiI	CCGCTC	2 cut(s)	270, 531
MboI	GATC	4 cut(s)	375, 467, 539, 684
MboII	GAAGA	1 cut(s)	681
MflI	RGATCY	1 cut(s)	684
MhlI	GDGCHC	1 cut(s)	60
MlsI	TGGCCA	1 cut(s)	38
MluCI	AATT	4 cut(s)	12, 114, 697, 709
MluNI	TGGCCA	1 cut(s)	38
MlyI	GAGTC	2 cut(s)	118, 682
MmeI	TCCRAC	4 cut(s)	146, 245, 717, 738
Mox20I	TGGCCA	1 cut(s)	38
MscI	TGGCCA	1 cut(s)	38
MseI	TTAA	2 cut(s)	404, 739
Msp20I	TGGCCA	1 cut(s)	38
MspI	CCGG	6 cut(s)	250, 259, 341, 440, 517, 548
MspR9I	CCNGG	4 cut(s)	251, 517, 518, 549
Mva1269I	GAATGC	1 cut(s)	669
MvnI	CGCG	2 cut(s)	380, 455
MwoI	GCNNNNNNNGC	8 cut(s)	235, 356, 377, 388, 449, 482, 485, 640
NciI	CCSGG	4 cut(s)	251, 517, 518, 549
NdeII	GATC	4 cut(s)	375, 467, 539, 684
NlaIII	CATG	1 cut(s)	655
NlaIV	GGNNCC	2 cut(s)	200, 297
NmeAIII	GCCGAG	2 cut(s)	255, 705
NmuCI	GTSAC	1 cut(s)	458
NotI	GCGGCCGC	1 cut(s)	474
PcsI	WCGNNNNNNNCGW	3 cut(s)	212, 298, 425
PctI	GAATGC	1 cut(s)	669
PfeI	GAWTC	4 cut(s)	161, 255, 289, 637
Pfl23II	CGTACG	1 cut(s)	360
PkrI	GCNGC	9 cut(s)	53, 352, 355, 358, 373, 454, 475, 478, 487
Ple19I	CGATCG	1 cut(s)	378
PleI	GAGTC	2 cut(s)	118, 681
PpsI	GAGTC	2 cut(s)	118, 681
Ppu21I	YACGTR	2 cut(s)	302, 429
PspLI	CGTACG	1 cut(s)	360
PspN4I	GGNNCC	2 cut(s)	200, 297
PspPI	GGNCC	3 cut(s)	198, 389, 586
PsuI	RGATCY	1 cut(s)	684
PvuI	CGATCG	1 cut(s)	378
RgaI	GCGATCGC	1 cut(s)	378
RsaI	GTAC	2 cut(s)	362, 431
RsaNI	GTAC	2 cut(s)	361, 430
SaqAI	TTAA	2 cut(s)	404, 739
SatI	GCNGC	9 cut(s)	52, 351, 354, 357, 372, 453, 474, 477, 486
Sau3AI	GATC	4 cut(s)	375, 467, 539, 684
Sau96I	GGNCC	3 cut(s)	198, 389, 586
SchI	GAGTC	2 cut(s)	118, 682
ScrFI	CCNGG	4 cut(s)	251, 517, 518, 549
SduI	GDGCHC	1 cut(s)	60
SetI	ASST	6 cut(s)	33, 92, 157, 304, 369, 431
SfaAI	GCGATCGC	1 cut(s)	378
SgfI	GCGATCGC	1 cut(s)	378
SinI	GGWCC	1 cut(s)	198
SmaI	CCCGGG	1 cut(s)	518
SnaBI	TACGTA	1 cut(s)	429
Sse9I	AATT	4 cut(s)	12, 114, 697, 709
SspMI	CTAG	1 cut(s)	480
StyD4I	CCNGG	4 cut(s)	249, 515, 516, 547
TaaI	ACNGT	2 cut(s)	244, 492
TaiI	ACGT	3 cut(s)	304, 369, 431
TaqI	TCGA	3 cut(s)	215, 419, 494
TaqII	GACCGA	1 cut(s)	186
TasI	AATT	4 cut(s)	12, 114, 697, 709
TauI	GCSGC	6 cut(s)	353, 356, 374, 455, 476, 479
TfiI	GAWTC	4 cut(s)	161, 255, 289, 637
Tru1I	TTAA	2 cut(s)	404, 739
Tru9I	TTAA	2 cut(s)	404, 739
TseFI	GTSAC	1 cut(s)	458
TseI	GCWGC	3 cut(s)	51, 356, 485
Tsp45I	GTSAC	1 cut(s)	458
TspGWI	ACGGA	2 cut(s)	33, 732
TspMI	CCCGGG	1 cut(s)	516
VpaK11BI	GGWCC	1 cut(s)	198
XapI	RAATTY	2 cut(s)	114, 709
XmaI	CCCGGG	1 cut(s)	516
XmiI	GTMKAC	1 cut(s)	246
XspI	CTAG	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.