Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0012077

Physical Location & Seq

Genomic Coordinates Reverse (-)

21396222 .. 21397656

Gene Structure 1435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g28960.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGCTGATCCGTATGGCAACGTGCCCAAAAGCGACGAACAGCCATCCGATTCCAACCCACCTTTCTTTATTCAACTTCCTCCCACCACCAGCACCTCCTCCTCCATTGTCAATGATCTTCAAGACCTCTCGGGCCTCCGTTCTCCGACCGGTGGTGGATCCGTTTCTTCTTCGCCAAGGGGCAGACACCCGCTTTACCGAGGGATCCGGAGCCGGAGCGGGAAATGGGTGTCCGAGATAAGGGAGCCGCGTAAGTCTACTCGGATATGGCTTGGCACGTATGCGATGCCCGAGATGGCCGCCGCGGCGTACGACGTGGCGGCCATCGCGCTCAAAGGGCCTGATACGGCCCTCAATTTCCCCAGCGCCCTAATTACCTATCCGATCCCGACTTCTTCGGCGGCCAGTGACATAAGGGCTGCGGCGGCTAGGGCAGCCGCGTCTAGGGCGGAGGTCATTAGGCAGGGAGAGAGCTCATCGGCGGGTGGGGTTGAAAATGTGGATAGGTCAGGTGGTGGTCGTGGTCGTCGTGCTGCGGTGACGTCAGATGACGGTGGTGGTAGTCAGGAGTTTATGGACGAGGAAGCGCTGCTGAATATGCCGAATTTGCTGGCGGACATGGCGGAGGGAATGCTGGTGAGTCCTCCGAGAGGACCCGCTAATGATTCGCCAGAAAATTCGGACGGAGAAAGTCTGTGGAGCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0043207 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

236

Amino Acids

24.64

Weight (kDa)

4.92

Isoelectric Point (pI)

61.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	65 - 113	1.6e-10	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12630 AT5G52020
fragaria_vesca	FvH4_7g28960
malus_domestica	MD01G1196300.v1.1 MD07G1263200.v1.1
prunus_persica	Prupe.2G289600_v2.0.a1
pyrus_communis	pycom01g20680 pycom07g24220
rosa_chinensis	RchiOBHm_Chr1g0376651
rosa_laevigata	RLG00000026584
rosa_multiflora	Rmu_co8365147.1_g000001 Rmu_sc0005594.1_g000003
rosa_roxburghii	Rroxscaffold_4G00281910
rosa_rugosa	Rorug01G0397100
rosa_samantha	Rh1AG414000 Rh1BG373400 Rh1CG387300 Rh1DG404400
rosa_wichuraiana	Rw1G036320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	545
AccBSI	CCGCTC	1 cut(s)	219
AccI	GTMKAC	1 cut(s)	257
AccII	CGCG	4 cut(s)	250, 305, 329, 440
AccIII	TCCGGA	1 cut(s)	207
AclWI	GGATC	6 cut(s)	2, 153, 166, 199, 212, 379
AcoI	YGGCCR	3 cut(s)	297, 321, 402
AcsI	RAATTY	2 cut(s)	604, 676
AcyI	GRCGYC	1 cut(s)	542
AfaI	GTAC	1 cut(s)	311
AfeI	AGCGCT	1 cut(s)	588
AfiI	CCNNNNNNNGG	4 cut(s)	152, 240, 444, 650
AgeI	ACCGGT	1 cut(s)	149
AgsI	TTSAA	3 cut(s)	74, 122, 494
AjiI	CACGTC	1 cut(s)	316
AjuI	GAANNNNNNNTTGG	2 cut(s)	47, 79
AluBI	AGCT	2 cut(s)	474, 702
AluI	AGCT	2 cut(s)	474, 702
Alw21I	GWGCWC	1 cut(s)	476
AlwI	GGATC	6 cut(s)	2, 153, 166, 199, 212, 379
Ama87I	CYCGRG	2 cut(s)	130, 290
Aor13HI	TCCGGA	1 cut(s)	207
Aor51HI	AGCGCT	1 cut(s)	588
AoxI	GGCC	6 cut(s)	133, 297, 321, 338, 348, 402
ApeKI	GCWGC	4 cut(s)	419, 434, 533, 589
ApoI	RAATTY	2 cut(s)	604, 676
AsiGI	ACCGGT	1 cut(s)	149
AspLEI	GCGC	3 cut(s)	331, 368, 589
AspS9I	GGNCC	4 cut(s)	133, 338, 349, 653
AsuHPI	GGTGA	2 cut(s)	550, 649
AvaI	CYCGRG	2 cut(s)	130, 290
AvaII	GGWCC	1 cut(s)	653
BaeGI	GKGCMC	1 cut(s)	27
BamHI	GGATCC	2 cut(s)	158, 204
BanII	GRGCYC	1 cut(s)	476
Bbv12I	GWGCWC	1 cut(s)	476
BbvI	GCAGC	4 cut(s)	406, 446, 520, 576
BccI	CCATC	3 cut(s)	52, 289, 332
BceAI	ACGGC	1 cut(s)	363
BfaI	CTAG	2 cut(s)	429, 444
BfoI	RGCGCY	2 cut(s)	369, 590
BglI	GCCNNNNNGGC	1 cut(s)	305
Bme18I	GGWCC	1 cut(s)	653
BmeT110I	CYCGRG	2 cut(s)	130, 290
BmgBI	CACGTC	1 cut(s)	316
BmgT120I	GGNCC	4 cut(s)	133, 338, 349, 653
BmiI	GGNNCC	5 cut(s)	160, 206, 212, 246, 655
BmsI	GCATC	1 cut(s)	276
BsaAI	YACGTR	1 cut(s)	279
BsaHI	GRCGYC	1 cut(s)	542
BsaJI	CCNNGG	3 cut(s)	176, 199, 303
BsaWI	WCCGGW	2 cut(s)	149, 207
Bsc4I	CCNNNNNNNGG	4 cut(s)	152, 240, 444, 650
Bse118I	RCCGGY	1 cut(s)	149
Bse1I	ACTGG	1 cut(s)	405
BseAI	TCCGGA	1 cut(s)	207
BseDI	CCNNGG	3 cut(s)	176, 199, 303
BseGI	GGATG	1 cut(s)	44
BseLI	CCNNNNNNNGG	4 cut(s)	152, 240, 444, 650
BseNI	ACTGG	1 cut(s)	405
BseRI	GAGGAG	2 cut(s)	88, 91
BseSI	GKGCMC	1 cut(s)	27
BseXI	GCAGC	4 cut(s)	406, 446, 520, 576
BseYI	CCCAGC	1 cut(s)	362
Bsh1236I	CGCG	4 cut(s)	250, 305, 329, 440
Bsh1285I	CGRYCG	1 cut(s)	150
BshFI	GGCC	6 cut(s)	135, 299, 323, 340, 350, 404
BshTI	ACCGGT	1 cut(s)	149
BsiEI	CGRYCG	1 cut(s)	150
BsiHKAI	GWGCWC	1 cut(s)	476
BsiHKCI	CYCGRG	2 cut(s)	130, 290
BsiSI	CCGG	3 cut(s)	150, 208, 214
BsiWI	CGTACG	1 cut(s)	309
BslI	CCNNNNNNNGG	4 cut(s)	152, 240, 444, 650
BsmI	GAATGC	1 cut(s)	636
BsnI	GGCC	6 cut(s)	135, 299, 323, 340, 350, 404
BsoBI	CYCGRG	2 cut(s)	130, 290
Bsp1286I	GDGCHC	2 cut(s)	27, 476
Bsp13I	TCCGGA	1 cut(s)	207
Bsp143I	GATC	5 cut(s)	7, 115, 158, 204, 384
BspANI	GGCC	6 cut(s)	135, 299, 323, 340, 350, 404
BspEI	TCCGGA	1 cut(s)	207
BspFNI	CGCG	4 cut(s)	250, 305, 329, 440
BspLI	GGNNCC	5 cut(s)	160, 206, 212, 246, 655
BspPI	GGATC	6 cut(s)	2, 153, 166, 199, 212, 379
BsrBI	CCGCTC	1 cut(s)	219
BsrFI	RCCGGY	1 cut(s)	149
BsrI	ACTGG	1 cut(s)	405
BssAI	RCCGGY	1 cut(s)	149
BssECI	CCNNGG	3 cut(s)	176, 199, 303
BssMI	GATC	5 cut(s)	7, 115, 158, 204, 384
BssNI	GRCGYC	1 cut(s)	542
BssT1I	CCWWGG	1 cut(s)	176
Bst4CI	ACNGT	1 cut(s)	554
BstACI	GRCGYC	1 cut(s)	542
BstBAI	YACGTR	1 cut(s)	279
BstC8I	GCNNGC	1 cut(s)	612
BstDSI	CCRYGG	1 cut(s)	303
BstENI	CCTNNNNNAGG	1 cut(s)	648
BstF5I	GGATG	1 cut(s)	44
BstFNI	CGCG	4 cut(s)	250, 305, 329, 440
BstH2I	RGCGCY	2 cut(s)	369, 590
BstHHI	GCGC	3 cut(s)	331, 368, 589
BstKTI	GATC	5 cut(s)	10, 118, 161, 207, 387
BstMBI	GATC	5 cut(s)	7, 115, 158, 204, 384
BstMCI	CGRYCG	1 cut(s)	150
BstSLI	GKGCMC	1 cut(s)	27
BstUI	CGCG	4 cut(s)	250, 305, 329, 440
BstV1I	GCAGC	4 cut(s)	406, 446, 520, 576
BstX2I	RGATCY	2 cut(s)	158, 204
BstYI	RGATCY	2 cut(s)	158, 204
BsuRI	GGCC	6 cut(s)	135, 299, 323, 340, 350, 404
BtgI	CCRYGG	1 cut(s)	303
BtgZI	GCGATG	2 cut(s)	299, 310
BtrI	CACGTC	1 cut(s)	316
BtsCI	GGATG	1 cut(s)	44
BtsIMutI	CAGTG	1 cut(s)	412
Cac8I	GCNNGC	1 cut(s)	612
CfoI	GCGC	3 cut(s)	331, 368, 589
Cfr10I	RCCGGY	1 cut(s)	149
Cfr13I	GGNCC	4 cut(s)	133, 338, 349, 653
Cfr42I	CCGCGG	1 cut(s)	306
CseI	GACGC	1 cut(s)	429
Csp6I	GTAC	1 cut(s)	310
CspAI	ACCGGT	1 cut(s)	149
CviAII	CATG	1 cut(s)	619
CviQI	GTAC	1 cut(s)	310
DpnI	GATC	5 cut(s)	9, 117, 160, 206, 386
DpnII	GATC	5 cut(s)	7, 115, 158, 204, 384
EaeI	YGGCCR	3 cut(s)	297, 321, 402
EciI	GGCGGA	3 cut(s)	464, 629, 638
Ecl136II	GAGCTC	1 cut(s)	474
Eco130I	CCWWGG	1 cut(s)	176
Eco24I	GRGCYC	1 cut(s)	476
Eco47I	GGWCC	1 cut(s)	653
Eco47III	AGCGCT	1 cut(s)	588
Eco53kI	GAGCTC	1 cut(s)	474
Eco88I	CYCGRG	2 cut(s)	130, 290
EcoICRI	GAGCTC	1 cut(s)	474
EcoNI	CCTNNNNNAGG	1 cut(s)	648
EcoO109I	RGGNCCY	2 cut(s)	338, 653
EcoT14I	CCWWGG	1 cut(s)	176
EcoT38I	GRGCYC	1 cut(s)	476
ErhI	CCWWGG	1 cut(s)	176
FaeI	CATG	1 cut(s)	622
FaiI	YATR	7 cut(s)	15, 268, 282, 413, 575, 599, 620
FatI	CATG	1 cut(s)	618
FauI	CCCGC	4 cut(s)	198, 212, 475, 664
FblI	GTMKAC	1 cut(s)	257
FokI	GGATG	1 cut(s)	31
FriOI	GRGCYC	1 cut(s)	476
FspBI	CTAG	2 cut(s)	429, 444
GlaI	GCGC	3 cut(s)	330, 367, 588
GsaI	CCCAGC	1 cut(s)	366
HaeII	RGCGCY	2 cut(s)	369, 590
HaeIII	GGCC	6 cut(s)	135, 299, 323, 340, 350, 404
HapII	CCGG	3 cut(s)	150, 208, 214
HgaI	GACGC	1 cut(s)	429
HhaI	GCGC	3 cut(s)	331, 368, 589
Hin1I	GRCGYC	1 cut(s)	542
Hin1II	CATG	1 cut(s)	622
Hin6I	GCGC	3 cut(s)	329, 366, 587
HinP1I	GCGC	3 cut(s)	329, 366, 587
HinfI	GANTC	3 cut(s)	50, 640, 665
HpaII	CCGG	3 cut(s)	150, 208, 214
HphI	GGTGA	2 cut(s)	550, 649
Hpy166II	GTNNAC	1 cut(s)	258
Hpy188I	TCNGA	8 cut(s)	49, 147, 235, 264, 384, 547, 648, 682
Hpy188III	TCNNGA	4 cut(s)	122, 208, 388, 566
Hpy8I	GTNNAC	1 cut(s)	258
Hpy99I	CGWCG	3 cut(s)	38, 317, 531
HpyCH4III	ACNGT	1 cut(s)	554
HpyCH4IV	ACGT	4 cut(s)	21, 278, 315, 542
HpySE526I	ACGT	4 cut(s)	21, 278, 315, 542
Hsp92I	GRCGYC	1 cut(s)	542
Hsp92II	CATG	1 cut(s)	622
HspAI	GCGC	3 cut(s)	329, 366, 587
Kpn2I	TCCGGA	1 cut(s)	207
KspI	CCGCGG	1 cut(s)	306
Kzo9I	GATC	5 cut(s)	7, 115, 158, 204, 384
LmnI	GCTCC	4 cut(s)	210, 216, 244, 699
Lsp1109I	GCAGC	4 cut(s)	406, 446, 520, 576
LweI	GCATC	1 cut(s)	276
MaeI	CTAG	2 cut(s)	429, 444
MaeII	ACGT	4 cut(s)	21, 278, 315, 542
MaeIII	GTNAC	2 cut(s)	407, 538
MalI	GATC	5 cut(s)	9, 117, 160, 206, 386
MbiI	CCGCTC	1 cut(s)	219
MboI	GATC	5 cut(s)	7, 115, 158, 204, 384
MboII	GAAGA	4 cut(s)	110, 159, 162, 387
MflI	RGATCY	2 cut(s)	158, 204
MhlI	GDGCHC	2 cut(s)	27, 476
MluCI	AATT	4 cut(s)	355, 372, 604, 676
MlyI	GAGTC	1 cut(s)	649
MmeI	TCCRAC	2 cut(s)	78, 170
MroI	TCCGGA	1 cut(s)	207
MseI	TTAA	1 cut(s)	706
MspA1I	CMGCKG	1 cut(s)	305
MspI	CCGG	3 cut(s)	150, 208, 214
Mva1269I	GAATGC	1 cut(s)	636
MvnI	CGCG	4 cut(s)	250, 305, 329, 440
NdeII	GATC	5 cut(s)	7, 115, 158, 204, 384
NlaIII	CATG	1 cut(s)	622
NlaIV	GGNNCC	5 cut(s)	160, 206, 212, 246, 655
NmuCI	GTSAC	2 cut(s)	407, 538
PcsI	WCGNNNNNNNCGW	1 cut(s)	526
PctI	GAATGC	1 cut(s)	636
PfeI	GAWTC	2 cut(s)	50, 665
Pfl23II	CGTACG	1 cut(s)	309
PinAI	ACCGGT	1 cut(s)	149
PleI	GAGTC	1 cut(s)	648
PpsI	GAGTC	1 cut(s)	648
Ppu21I	YACGTR	1 cut(s)	279
PpuMI	RGGWCCY	1 cut(s)	653
Psp124BI	GAGCTC	1 cut(s)	476
Psp5II	RGGWCCY	1 cut(s)	653
PspFI	CCCAGC	1 cut(s)	362
PspLI	CGTACG	1 cut(s)	309
PspN4I	GGNNCC	5 cut(s)	160, 206, 212, 246, 655
PspPI	GGNCC	4 cut(s)	133, 338, 349, 653
PspPPI	RGGWCCY	1 cut(s)	653
PsuI	RGATCY	2 cut(s)	158, 204
RsaI	GTAC	1 cut(s)	311
RsaNI	GTAC	1 cut(s)	310
SacI	GAGCTC	1 cut(s)	476
SacII	CCGCGG	1 cut(s)	306
SaqAI	TTAA	1 cut(s)	706
Sau3AI	GATC	5 cut(s)	7, 115, 158, 204, 384
Sau96I	GGNCC	4 cut(s)	133, 338, 349, 653
SchI	GAGTC	1 cut(s)	649
SduI	GDGCHC	2 cut(s)	27, 476
SfaNI	GCATC	1 cut(s)	276
Sfr303I	CCGCGG	1 cut(s)	306
SgrBI	CCGCGG	1 cut(s)	306
SinI	GGWCC	1 cut(s)	653
Sse9I	AATT	4 cut(s)	355, 372, 604, 676
SspMI	CTAG	2 cut(s)	429, 444
SstI	GAGCTC	1 cut(s)	476
StyI	CCWWGG	1 cut(s)	176
TaaI	ACNGT	1 cut(s)	554
TaiI	ACGT	4 cut(s)	24, 281, 318, 545
TasI	AATT	4 cut(s)	355, 372, 604, 676
TauI	GCSGC	9 cut(s)	250, 302, 305, 308, 323, 404, 425, 428, 440
TfiI	GAWTC	2 cut(s)	50, 665
Tru1I	TTAA	1 cut(s)	706
Tru9I	TTAA	1 cut(s)	706
TscAI	CASTG	1 cut(s)	412
TseFI	GTSAC	2 cut(s)	407, 538
TseI	GCWGC	4 cut(s)	419, 434, 533, 589
Tsp45I	GTSAC	2 cut(s)	407, 538
TspGWI	ACGGA	3 cut(s)	128, 151, 699
TspRI	CASTG	1 cut(s)	412
VpaK11BI	GGWCC	1 cut(s)	653
XagI	CCTNNNNNAGG	1 cut(s)	648
XapI	RAATTY	2 cut(s)	604, 676
XmiI	GTMKAC	1 cut(s)	257
XspI	CTAG	2 cut(s)	429, 444
ZraI	GACGTC	1 cut(s)	543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.