Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0012077

Physical Location & Seq

Genomic Coordinates Reverse (-)

28404193 .. 28406793

Gene Structure 2601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G289600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGCCGATCCGTATCGTAACGTGCCCAAAAGTGACCAACCAACTCCAACCTCCAATTCTTCCAACCCTGCCTTTATACTACTTCCTCCTCCTGCTCCTCCTGATCCTACTCCTCCAGCAGCACACGATCGAGACTGCTCATCTTCCCCCAGACCCGGGCCCACGGGCGCCTCCACATCGTCATCGCCCAGGGGCCACCCCGTGTACAGGGGAATCCGGTCCCGGAGCGGGAAATGGGTGTCCGAGATTCGGGAGCCGCGTAAGACGACGCGCATATGGCTTGGGACGTACGCCAAGCCGGAGATGGCGGCTGCTGCTTACGACGTGGCGGCGATCGCTCTGAAAGGACCTGATACGGCGCTGAACTTCCCCAACTTGATTCTTACGTATCCGATACCGGCTTCCTCTGCTGCGAGTGACATACGCGCTGCGGCGGCTAGGGCAGCTCAGTCGAGGGCGGAGATGATATCTGCTGGCGAGAGCGGAGGGAGATCGGAGCCGGGTGGGGTAAAAACTGAGGAGGGTAGGGTTGGGCAGGATGAGGAGGAGGAGGAGTTTATGGATGAGGAAGCGCTTTTAAATATGCCGAATTTGCTGGTGGACATGGCGGAGGGAATGCTGGTGAGCCCCCCGAGAATCTCTTCCGAGGACTCGCCTGGGAATTCCGATGGAGGAGAAAATCTCTGGAGCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0043207 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

232

Amino Acids

24.48

Weight (kDa)

4.83

Isoelectric Point (pI)

63.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12630 AT5G52020
fragaria_vesca	FvH4_7g28960
malus_domestica	MD01G1196300.v1.1 MD07G1263200.v1.1
prunus_persica	Prupe.2G289600_v2.0.a1
pyrus_communis	pycom01g20680 pycom07g24220
rosa_chinensis	RchiOBHm_Chr1g0376651
rosa_laevigata	RLG00000026584
rosa_multiflora	Rmu_co8365147.1_g000001 Rmu_sc0005594.1_g000003
rosa_roxburghii	Rroxscaffold_4G00281910
rosa_rugosa	Rorug01G0397100
rosa_samantha	Rh1AG414000 Rh1BG373400 Rh1CG387300 Rh1DG404400
rosa_wichuraiana	Rw1G036320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	167
AccBSI	CCGCTC	2 cut(s)	228, 483
AccII	CGCG	3 cut(s)	259, 271, 426
AciI	CCGC	9 cut(s)	228, 257, 308, 329, 431, 434, 458, 483, 608
AclWI	GGATC	2 cut(s)	2, 98
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	589, 661
AcyI	GRCGYC	1 cut(s)	168
AdeI	CACNNNGTG	1 cut(s)	202
AfaI	GTAC	2 cut(s)	206, 290
AfeI	AGCGCT	1 cut(s)	573
AfiI	CCNNNNNNNGG	5 cut(s)	155, 156, 207, 228, 249
AjiI	CACGTC	1 cut(s)	325
AjnI	CCWGG	2 cut(s)	188, 655
AjuI	GAANNNNNNNTTGG	2 cut(s)	40, 72
AluBI	AGCT	2 cut(s)	446, 690
AluI	AGCT	2 cut(s)	446, 690
Alw26I	GTCTC	1 cut(s)	126
AlwI	GGATC	2 cut(s)	2, 98
Ama87I	CYCGRG	2 cut(s)	155, 631
Aor51HI	AGCGCT	1 cut(s)	573
AoxI	GGCC	3 cut(s)	3, 158, 193
ApaI	GGGCCC	1 cut(s)	162
ApeKI	GCWGC	6 cut(s)	119, 311, 314, 410, 428, 443
ApoI	RAATTY	2 cut(s)	589, 661
AsiSI	GCGATCGC	1 cut(s)	336
Asp700I	GAANNNNTTC	1 cut(s)	640
AspLEI	GCGC	5 cut(s)	170, 273, 361, 428, 574
AspS9I	GGNCC	5 cut(s)	158, 159, 193, 219, 347
AsuC2I	CCSGG	4 cut(s)	156, 157, 223, 501
AsuHPI	GGTGA	1 cut(s)	634
AvaI	CYCGRG	2 cut(s)	155, 631
AvaII	GGWCC	2 cut(s)	219, 347
BaeGI	GKGCMC	2 cut(s)	27, 162
BanI	GGYRCC	1 cut(s)	167
BanII	GRGCYC	2 cut(s)	162, 629
BbvI	GCAGC	6 cut(s)	131, 298, 301, 397, 415, 455
BccI	CCATC	2 cut(s)	298, 662
BceAI	ACGGC	1 cut(s)	372
BcgI	CGANNNNNNTGC	2 cut(s)	432, 466
BciT130I	CCWGG	2 cut(s)	190, 657
BciVI	GTATCC	1 cut(s)	399
BcnI	CCSGG	4 cut(s)	156, 157, 223, 501
BcoDI	GTCTC	1 cut(s)	126
BfaI	CTAG	1 cut(s)	438
BfoI	RGCGCY	3 cut(s)	171, 362, 575
BfuI	GTATCC	1 cut(s)	399
Bme1390I	CCNGG	6 cut(s)	156, 157, 190, 223, 501, 657
Bme18I	GGWCC	2 cut(s)	219, 347
BmeT110I	CYCGRG	2 cut(s)	155, 631
BmgBI	CACGTC	1 cut(s)	325
BmgT120I	GGNCC	5 cut(s)	158, 159, 193, 219, 347
BmiI	GGNNCC	6 cut(s)	160, 169, 194, 221, 255, 498
BmrFI	CCNGG	6 cut(s)	156, 157, 190, 223, 501, 657
BplI	GAGNNNNNCTC	1 cut(s)	666
BpmI	CTGGAG	1 cut(s)	99
BpuMI	CCSGG	4 cut(s)	156, 157, 223, 501
BsaAI	YACGTR	1 cut(s)	387
BsaBI	GATNNNNATC	1 cut(s)	12
BsaHI	GRCGYC	1 cut(s)	168
BsaJI	CCNNGG	6 cut(s)	155, 162, 188, 189, 645, 656
BsaWI	WCCGGW	1 cut(s)	216
BsaXI	ACNNNNNCTCC	2 cut(s)	539, 569
Bsc4I	CCNNNNNNNGG	5 cut(s)	155, 156, 207, 228, 249
Bse118I	RCCGGY	1 cut(s)	397
Bse8I	GATNNNNATC	1 cut(s)	12
BseBI	CCWGG	2 cut(s)	190, 657
BseDI	CCNNGG	6 cut(s)	155, 162, 188, 189, 645, 656
BseGI	GGATG	2 cut(s)	544, 568
BseJI	GATNNNNATC	1 cut(s)	12
BseLI	CCNNNNNNNGG	5 cut(s)	155, 156, 207, 228, 249
BseMII	CTCAG	2 cut(s)	461, 507
BseRI	GAGGAG	9 cut(s)	78, 87, 102, 533, 557, 560, 563, 566, 687
BseSI	GKGCMC	2 cut(s)	27, 162
BseXI	GCAGC	6 cut(s)	131, 298, 301, 397, 415, 455
Bsh1236I	CGCG	3 cut(s)	259, 271, 426
Bsh1285I	CGRYCG	2 cut(s)	130, 336
BshFI	GGCC	3 cut(s)	5, 160, 195
BshNI	GGYRCC	1 cut(s)	167
BsiEI	CGRYCG	2 cut(s)	130, 336
BsiHKCI	CYCGRG	2 cut(s)	155, 631
BsiSI	CCGG	6 cut(s)	156, 217, 223, 299, 398, 500
BsiWI	CGTACG	1 cut(s)	288
BslFI	GGGAC	2 cut(s)	205, 298
BslI	CCNNNNNNNGG	5 cut(s)	155, 156, 207, 228, 249
BsmAI	GTCTC	1 cut(s)	126
BsmFI	GGGAC	2 cut(s)	205, 298
BsmI	GAATGC	1 cut(s)	621
BsnI	GGCC	3 cut(s)	5, 160, 195
BsoBI	CYCGRG	2 cut(s)	155, 631
Bsp120I	GGGCCC	1 cut(s)	158
Bsp1286I	GDGCHC	3 cut(s)	27, 162, 629
Bsp1407I	TGTACA	1 cut(s)	204
Bsp143I	GATC	5 cut(s)	7, 103, 127, 333, 491
BspACI	CCGC	9 cut(s)	228, 257, 308, 329, 431, 434, 458, 483, 608
BspANI	GGCC	3 cut(s)	5, 160, 195
BspCNI	CTCAG	2 cut(s)	460, 508
BspFNI	CGCG	3 cut(s)	259, 271, 426
BspLI	GGNNCC	6 cut(s)	160, 169, 194, 221, 255, 498
BspPI	GGATC	2 cut(s)	2, 98
BspT107I	GGYRCC	1 cut(s)	167
BsrBI	CCGCTC	2 cut(s)	228, 483
BsrFI	RCCGGY	1 cut(s)	397
BsrGI	TGTACA	1 cut(s)	204
BssAI	RCCGGY	1 cut(s)	397
BssECI	CCNNGG	6 cut(s)	155, 162, 188, 189, 645, 656
BssMI	GATC	5 cut(s)	7, 103, 127, 333, 491
BssNI	GRCGYC	1 cut(s)	168
Bst2UI	CCWGG	2 cut(s)	190, 657
Bst6I	CTCTTC	1 cut(s)	646
BstACI	GRCGYC	1 cut(s)	168
BstAUI	TGTACA	1 cut(s)	204
BstBAI	YACGTR	1 cut(s)	387
BstC8I	GCNNGC	1 cut(s)	475
BstDEI	CTNAG	2 cut(s)	447, 516
BstDSI	CCRYGG	1 cut(s)	162
BstF5I	GGATG	2 cut(s)	544, 568
BstFNI	CGCG	3 cut(s)	259, 271, 426
BstH2I	RGCGCY	3 cut(s)	171, 362, 575
BstHHI	GCGC	5 cut(s)	170, 273, 361, 428, 574
BstKTI	GATC	5 cut(s)	10, 106, 130, 336, 494
BstMAI	GTCTC	1 cut(s)	126
BstMBI	GATC	5 cut(s)	7, 103, 127, 333, 491
BstMCI	CGRYCG	2 cut(s)	130, 336
BstMWI	GCNNNNNNNGC	8 cut(s)	277, 314, 335, 407, 434, 440, 443, 592
BstNI	CCWGG	2 cut(s)	190, 657
BstSCI	CCNGG	6 cut(s)	154, 155, 188, 221, 499, 655
BstSLI	GKGCMC	2 cut(s)	27, 162
BstSNI	TACGTA	1 cut(s)	387
BstUI	CGCG	3 cut(s)	259, 271, 426
BstV1I	GCAGC	6 cut(s)	131, 298, 301, 397, 415, 455
BsuI	GTATCC	1 cut(s)	399
BsuRI	GGCC	3 cut(s)	5, 160, 195
BtgI	CCRYGG	1 cut(s)	162
BtgZI	GCGATG	1 cut(s)	168
BtrI	CACGTC	1 cut(s)	325
BtsCI	GGATG	2 cut(s)	544, 568
Cac8I	GCNNGC	1 cut(s)	475
CfoI	GCGC	5 cut(s)	170, 273, 361, 428, 574
Cfr10I	RCCGGY	1 cut(s)	397
Cfr13I	GGNCC	5 cut(s)	158, 159, 193, 219, 347
Cfr9I	CCCGGG	1 cut(s)	155
CseI	GACGC	1 cut(s)	277
Csp6I	GTAC	2 cut(s)	205, 289
CviAII	CATG	1 cut(s)	604
CviQI	GTAC	2 cut(s)	205, 289
DdeI	CTNAG	2 cut(s)	447, 516
DinI	GGCGCC	1 cut(s)	169
DpnI	GATC	5 cut(s)	9, 105, 129, 335, 493
DpnII	GATC	5 cut(s)	7, 103, 127, 333, 491
DraI	TTTAAA	1 cut(s)	579
DraIII	CACNNNGTG	1 cut(s)	202
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	646
EarI	CTCTTC	1 cut(s)	646
EciI	GGCGGA	2 cut(s)	473, 623
Eco105I	TACGTA	1 cut(s)	387
Eco24I	GRGCYC	2 cut(s)	162, 629
Eco32I	GATATC	1 cut(s)	468
Eco47I	GGWCC	2 cut(s)	219, 347
Eco47III	AGCGCT	1 cut(s)	573
Eco88I	CYCGRG	2 cut(s)	155, 631
EcoO109I	RGGNCCY	1 cut(s)	347
EcoRI	GAATTC	1 cut(s)	661
EcoRII	CCWGG	2 cut(s)	188, 655
EcoRV	GATATC	1 cut(s)	468
EcoT38I	GRGCYC	2 cut(s)	162, 629
EgeI	GGCGCC	1 cut(s)	169
EheI	GGCGCC	1 cut(s)	169
FaeI	CATG	1 cut(s)	607
FaiI	YATR	7 cut(s)	77, 275, 277, 422, 560, 584, 605
FaqI	GGGAC	2 cut(s)	205, 298
FatI	CATG	1 cut(s)	603
FauI	CCCGC	1 cut(s)	221
FauNDI	CATATG	1 cut(s)	275
FokI	GGATG	2 cut(s)	551, 575
FriOI	GRGCYC	2 cut(s)	162, 629
FspBI	CTAG	1 cut(s)	438
GlaI	GCGC	5 cut(s)	169, 272, 360, 427, 573
GsuI	CTGGAG	1 cut(s)	99
HaeII	RGCGCY	3 cut(s)	171, 362, 575
HaeIII	GGCC	3 cut(s)	5, 160, 195
HapII	CCGG	6 cut(s)	156, 217, 223, 299, 398, 500
HgaI	GACGC	1 cut(s)	277
HhaI	GCGC	5 cut(s)	170, 273, 361, 428, 574
Hin1I	GRCGYC	1 cut(s)	168
Hin1II	CATG	1 cut(s)	607
Hin6I	GCGC	5 cut(s)	168, 271, 359, 426, 572
HinP1I	GCGC	5 cut(s)	168, 271, 359, 426, 572
HinfI	GANTC	5 cut(s)	213, 247, 379, 636, 650
HpaII	CCGG	6 cut(s)	156, 217, 223, 299, 398, 500
HphI	GGTGA	1 cut(s)	634
Hpy166II	GTNNAC	2 cut(s)	205, 601
Hpy188I	TCNGA	6 cut(s)	244, 342, 393, 496, 646, 667
Hpy188III	TCNNGA	4 cut(s)	101, 131, 251, 685
Hpy8I	GTNNAC	2 cut(s)	205, 601
Hpy99I	CGWCG	2 cut(s)	271, 326
HpyCH4IV	ACGT	4 cut(s)	21, 287, 324, 386
HpyF10VI	GCNNNNNNNGC	8 cut(s)	277, 314, 335, 407, 434, 440, 443, 592
HpyF3I	CTNAG	2 cut(s)	447, 516
HpySE526I	ACGT	4 cut(s)	21, 287, 324, 386
Hsp92I	GRCGYC	1 cut(s)	168
Hsp92II	CATG	1 cut(s)	607
HspAI	GCGC	5 cut(s)	168, 271, 359, 426, 572
KasI	GGCGCC	1 cut(s)	167
Kzo9I	GATC	5 cut(s)	7, 103, 127, 333, 491
LmnI	GCTCC	5 cut(s)	100, 225, 253, 496, 687
Lsp1109I	GCAGC	6 cut(s)	131, 298, 301, 397, 415, 455
MaeI	CTAG	1 cut(s)	438
MaeII	ACGT	4 cut(s)	21, 287, 324, 386
MaeIII	GTNAC	3 cut(s)	17, 32, 416
MalI	GATC	5 cut(s)	9, 105, 129, 335, 493
MbiI	CCGCTC	2 cut(s)	228, 483
MboI	GATC	5 cut(s)	7, 103, 127, 333, 491
MboII	GAAGA	3 cut(s)	51, 135, 633
MhlI	GDGCHC	3 cut(s)	27, 162, 629
MluCI	AATT	3 cut(s)	55, 589, 661
Mly113I	GGCGCC	1 cut(s)	168
MlyI	GAGTC	1 cut(s)	644
MmeI	TCCRAC	2 cut(s)	71, 87
MroXI	GAANNNNTTC	1 cut(s)	640
MseI	TTAA	2 cut(s)	578, 694
MspI	CCGG	6 cut(s)	156, 217, 223, 299, 398, 500
MspR9I	CCNGG	6 cut(s)	156, 157, 190, 223, 501, 657
Mva1269I	GAATGC	1 cut(s)	621
MvaI	CCWGG	2 cut(s)	190, 657
MvnI	CGCG	3 cut(s)	259, 271, 426
MwoI	GCNNNNNNNGC	8 cut(s)	277, 314, 335, 407, 434, 440, 443, 592
NarI	GGCGCC	1 cut(s)	168
NciI	CCSGG	4 cut(s)	156, 157, 223, 501
NdeI	CATATG	1 cut(s)	275
NdeII	GATC	5 cut(s)	7, 103, 127, 333, 491
NlaIII	CATG	1 cut(s)	607
NlaIV	GGNNCC	6 cut(s)	160, 169, 194, 221, 255, 498
NmuCI	GTSAC	2 cut(s)	32, 416
PasI	CCCWGGG	1 cut(s)	189
PcsI	WCGNNNNNNNCGW	1 cut(s)	256
PctI	GAATGC	1 cut(s)	621
PdmI	GAANNNNTTC	1 cut(s)	640
PfeI	GAWTC	4 cut(s)	213, 247, 379, 636
Pfl23II	CGTACG	1 cut(s)	288
PfoI	TCCNGGA	1 cut(s)	221
Ple19I	CGATCG	2 cut(s)	130, 336
PleI	GAGTC	1 cut(s)	644
PluTI	GGCGCC	1 cut(s)	171
PpsI	GAGTC	1 cut(s)	644
Ppu21I	YACGTR	1 cut(s)	387
PpuMI	RGGWCCY	1 cut(s)	347
Psp5II	RGGWCCY	1 cut(s)	347
Psp6I	CCWGG	2 cut(s)	188, 655
PspGI	CCWGG	2 cut(s)	188, 655
PspLI	CGTACG	1 cut(s)	288
PspN4I	GGNNCC	6 cut(s)	160, 169, 194, 221, 255, 498
PspOMI	GGGCCC	1 cut(s)	158
PspPI	GGNCC	5 cut(s)	158, 159, 193, 219, 347
PspPPI	RGGWCCY	1 cut(s)	347
PvuI	CGATCG	2 cut(s)	130, 336
RgaI	GCGATCGC	1 cut(s)	336
RsaI	GTAC	2 cut(s)	206, 290
RsaNI	GTAC	2 cut(s)	205, 289
SaqAI	TTAA	2 cut(s)	578, 694
Sau3AI	GATC	5 cut(s)	7, 103, 127, 333, 491
Sau96I	GGNCC	5 cut(s)	158, 159, 193, 219, 347
SchI	GAGTC	1 cut(s)	644
ScrFI	CCNGG	6 cut(s)	156, 157, 190, 223, 501, 657
SduI	GDGCHC	3 cut(s)	27, 162, 629
SetI	ASST	8 cut(s)	24, 53, 290, 327, 352, 389, 448, 692
SfaAI	GCGATCGC	1 cut(s)	336
SfoI	GGCGCC	1 cut(s)	169
SgfI	GCGATCGC	1 cut(s)	336
SinI	GGWCC	2 cut(s)	219, 347
SmaI	CCCGGG	1 cut(s)	157
SnaBI	TACGTA	1 cut(s)	387
Sse9I	AATT	3 cut(s)	55, 589, 661
SsiI	CCGC	9 cut(s)	228, 257, 308, 329, 431, 434, 458, 483, 608
SspDI	GGCGCC	1 cut(s)	167
SspMI	CTAG	1 cut(s)	438
StyD4I	CCNGG	6 cut(s)	154, 155, 188, 221, 499, 655
TaiI	ACGT	4 cut(s)	24, 290, 327, 389
TaqI	TCGA	2 cut(s)	130, 452
TasI	AATT	3 cut(s)	55, 589, 661
TatI	WGTACW	1 cut(s)	204
TauI	GCSGC	5 cut(s)	259, 311, 332, 434, 437
TfiI	GAWTC	4 cut(s)	213, 247, 379, 636
Tru1I	TTAA	2 cut(s)	578, 694
Tru9I	TTAA	2 cut(s)	578, 694
TseFI	GTSAC	2 cut(s)	32, 416
TseI	GCWGC	6 cut(s)	119, 311, 314, 410, 428, 443
Tsp45I	GTSAC	2 cut(s)	32, 416
TspMI	CCCGGG	1 cut(s)	155
VpaK11BI	GGWCC	2 cut(s)	219, 347
XapI	RAATTY	2 cut(s)	589, 661
XcmI	CCANNNNNNNNNTGG	1 cut(s)	301
XmaI	CCCGGG	1 cut(s)	155
XmnI	GAANNNNTTC	1 cut(s)	640
XspI	CTAG	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.