Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0012077

Physical Location & Seq

Genomic Coordinates Reverse (-)

29438905 .. 29439612

Gene Structure 708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1196300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGCCGATCCGTATAGCAACGTGCCCAAAACCCCAGTTGACCAACCAACTACAACCTCCAATCCCAATCCCTTTATACAAATTCCTCCGACTCTTCCTAACCCTCCCACATCAACTCTACCTGACGATTCCTCCTCCTCCTCATCCCTGAGACTGGGCGTTCCGTCCCAGTCGGGAGGCTCGACATCAGGCTCGCCGAAAGGGCATCCAGTCTACCGGGGAATCCGGTGTCGGAACGGGAAATGGGTGTCCGAGATTCGGGAGCCACGTAAGACTACAAGGATATGGCTTGGCACTTACCCTAAGCCAGAGATGGCGGCGGCTGCGTACGACGTGGCGGCGATCGCTCTGAAAGGGCCTGATACTCCCTTGAACTTCCCCAACTCGATTCTTACGTACCCGATACCGGCTTCCTCCGCCGCGAGTGACATACGATCTGCGGCCGCTAGGGCAGCACAGTCGAGGGCAAATAAGTTAGTTCCCCGGGAGAGGGAGAGCGGAGGGAGATCGGAGCCGGGTAGTGTTGATAATGAGGGTGTTGGTGGGGTGGTGGGCCAGCAGGAGGAGGAGTTTATGGATGAGGAGGCGCTTTTGAATATGCCGAATTTGCTGGTGGACATGGCGGAGGGAATGCTGGTGAGTCCGCCCAGGATCTCTTCCGACAATTCGCCTGAAAATTCCGACGGAGAAAATCTTTGGAACTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0043207 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

236

Amino Acids

25.06

Weight (kDa)

4.94

Isoelectric Point (pI)

55.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	70 - 119	5.2e-11	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12630 AT5G52020
fragaria_vesca	FvH4_7g28960
malus_domestica	MD01G1196300.v1.1 MD07G1263200.v1.1
prunus_persica	Prupe.2G289600_v2.0.a1
pyrus_communis	pycom01g20680 pycom07g24220
rosa_chinensis	RchiOBHm_Chr1g0376651
rosa_laevigata	RLG00000026584
rosa_multiflora	Rmu_co8365147.1_g000001 Rmu_sc0005594.1_g000003
rosa_roxburghii	Rroxscaffold_4G00281910
rosa_rugosa	Rorug01G0397100
rosa_samantha	Rh1AG414000 Rh1BG373400 Rh1CG387300 Rh1DG404400
rosa_wichuraiana	Rw1G036320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	498
AccI	GTMKAC	1 cut(s)	213
AccII	CGCG	1 cut(s)	422
AclWI	GGATC	2 cut(s)	2, 659
AcoI	YGGCCR	2 cut(s)	3, 441
AcsI	RAATTY	3 cut(s)	81, 604, 676
AfaI	GTAC	2 cut(s)	329, 398
AfiI	CCNNNNNNNGG	6 cut(s)	154, 258, 406, 489, 490, 562
AgsI	TTSAA	2 cut(s)	373, 595
AjiI	CACGTC	1 cut(s)	334
AjnI	CCWGG	1 cut(s)	647
Alw26I	GTCTC	1 cut(s)	145
AlwI	GGATC	2 cut(s)	2, 659
Ama87I	CYCGRG	1 cut(s)	483
AoxI	GGCC	4 cut(s)	3, 356, 441, 553
ApeKI	GCWGC	2 cut(s)	323, 452
ApoI	RAATTY	3 cut(s)	81, 604, 676
AsiSI	GCGATCGC	1 cut(s)	345
AspLEI	GCGC	1 cut(s)	589
AspS9I	GGNCC	2 cut(s)	356, 553
AsuC2I	CCSGG	4 cut(s)	218, 484, 485, 516
AsuHPI	GGTGA	1 cut(s)	649
AvaI	CYCGRG	1 cut(s)	483
BaeGI	GKGCMC	1 cut(s)	27
BbvI	GCAGC	2 cut(s)	310, 464
BccI	CCATC	1 cut(s)	307
BcgI	CGANNNNNNTGC	2 cut(s)	441, 475
BciT130I	CCWGG	1 cut(s)	649
BcnI	CCSGG	4 cut(s)	218, 484, 485, 516
BcoDI	GTCTC	1 cut(s)	145
BfaI	CTAG	1 cut(s)	447
BfoI	RGCGCY	1 cut(s)	590
BglI	GCCNNNNNGGC	2 cut(s)	202, 449
BisI	GCNGC	8 cut(s)	318, 321, 324, 339, 420, 441, 444, 453
BlsI	GCNGC	8 cut(s)	319, 322, 325, 340, 421, 442, 445, 454
Bme1390I	CCNGG	5 cut(s)	218, 484, 485, 516, 649
BmeT110I	CYCGRG	1 cut(s)	483
BmgBI	CACGTC	1 cut(s)	334
BmgT120I	GGNCC	2 cut(s)	356, 553
BmiI	GGNNCC	2 cut(s)	264, 513
BmrFI	CCNGG	5 cut(s)	218, 484, 485, 516, 649
BmrI	ACTGGG	3 cut(s)	29, 163, 164
BmsI	GCATC	1 cut(s)	214
BmuI	ACTGGG	3 cut(s)	29, 163, 164
Bpu10I	CCTNAGC	1 cut(s)	303
BpuMI	CCSGG	4 cut(s)	218, 484, 485, 516
BsaAI	YACGTR	2 cut(s)	269, 396
BsaJI	CCNNGG	4 cut(s)	217, 482, 483, 647
BsaWI	WCCGGW	1 cut(s)	225
BsaXI	ACNNNNNCTCC	4 cut(s)	116, 146, 554, 584
Bsc4I	CCNNNNNNNGG	6 cut(s)	154, 258, 406, 489, 490, 562
Bse118I	RCCGGY	1 cut(s)	406
Bse1I	ACTGG	4 cut(s)	35, 159, 169, 209
BseBI	CCWGG	1 cut(s)	649
BseDI	CCNNGG	4 cut(s)	217, 482, 483, 647
BseGI	GGATG	3 cut(s)	143, 205, 583
BseLI	CCNNNNNNNGG	6 cut(s)	154, 258, 406, 489, 490, 562
BseMII	CTCAG	1 cut(s)	140
BseNI	ACTGG	4 cut(s)	35, 159, 169, 209
BseRI	GAGGAG	6 cut(s)	124, 127, 130, 578, 581, 596
BseSI	GKGCMC	1 cut(s)	27
BseX3I	CGGCCG	1 cut(s)	441
BseXI	GCAGC	2 cut(s)	310, 464
Bsh1236I	CGCG	1 cut(s)	422
Bsh1285I	CGRYCG	2 cut(s)	345, 444
BshFI	GGCC	4 cut(s)	5, 358, 443, 555
BsiEI	CGRYCG	2 cut(s)	345, 444
BsiHKCI	CYCGRG	1 cut(s)	483
BsiSI	CCGG	5 cut(s)	217, 226, 407, 484, 515
BsiWI	CGTACG	1 cut(s)	327
BslFI	GGGAC	1 cut(s)	151
BslI	CCNNNNNNNGG	6 cut(s)	154, 258, 406, 489, 490, 562
BsmAI	GTCTC	1 cut(s)	145
BsmFI	GGGAC	1 cut(s)	151
BsmI	GAATGC	1 cut(s)	636
BsnI	GGCC	4 cut(s)	5, 358, 443, 555
BsoBI	CYCGRG	1 cut(s)	483
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp143I	GATC	5 cut(s)	7, 342, 434, 506, 651
BspANI	GGCC	4 cut(s)	5, 358, 443, 555
BspCNI	CTCAG	1 cut(s)	141
BspFNI	CGCG	1 cut(s)	422
BspLI	GGNNCC	2 cut(s)	264, 513
BspPI	GGATC	2 cut(s)	2, 659
BsrBI	CCGCTC	1 cut(s)	498
BsrFI	RCCGGY	1 cut(s)	406
BsrI	ACTGG	4 cut(s)	35, 159, 169, 209
BssAI	RCCGGY	1 cut(s)	406
BssECI	CCNNGG	4 cut(s)	217, 482, 483, 647
BssMI	GATC	5 cut(s)	7, 342, 434, 506, 651
Bst2UI	CCWGG	1 cut(s)	649
Bst4CI	ACNGT	1 cut(s)	459
Bst6I	CTCTTC	2 cut(s)	99, 661
BstBAI	YACGTR	2 cut(s)	269, 396
BstC8I	GCNNGC	2 cut(s)	194, 557
BstDEI	CTNAG	2 cut(s)	149, 303
BstF5I	GGATG	3 cut(s)	143, 205, 583
BstFNI	CGCG	1 cut(s)	422
BstH2I	RGCGCY	1 cut(s)	590
BstHHI	GCGC	1 cut(s)	589
BstKTI	GATC	5 cut(s)	10, 345, 437, 509, 654
BstMAI	GTCTC	1 cut(s)	145
BstMBI	GATC	5 cut(s)	7, 342, 434, 506, 651
BstMCI	CGRYCG	2 cut(s)	345, 444
BstMWI	GCNNNNNNNGC	7 cut(s)	202, 323, 344, 416, 449, 452, 607
BstNI	CCWGG	1 cut(s)	649
BstSCI	CCNGG	5 cut(s)	216, 482, 483, 514, 647
BstSLI	GKGCMC	1 cut(s)	27
BstSNI	TACGTA	1 cut(s)	396
BstUI	CGCG	1 cut(s)	422
BstV1I	GCAGC	2 cut(s)	310, 464
BstX2I	RGATCY	1 cut(s)	651
BstYI	RGATCY	1 cut(s)	651
BstZI	CGGCCG	1 cut(s)	441
BsuRI	GGCC	4 cut(s)	5, 358, 443, 555
BtrI	CACGTC	1 cut(s)	334
BtsCI	GGATG	3 cut(s)	143, 205, 583
Cac8I	GCNNGC	2 cut(s)	194, 557
CciNI	GCGGCCGC	1 cut(s)	441
CfoI	GCGC	1 cut(s)	589
Cfr10I	RCCGGY	1 cut(s)	406
Cfr13I	GGNCC	2 cut(s)	356, 553
Cfr9I	CCCGGG	1 cut(s)	483
Csp6I	GTAC	2 cut(s)	328, 397
CviAII	CATG	1 cut(s)	619
CviQI	GTAC	2 cut(s)	328, 397
DdeI	CTNAG	2 cut(s)	149, 303
DpnI	GATC	5 cut(s)	9, 344, 436, 508, 653
DpnII	GATC	5 cut(s)	7, 342, 434, 506, 651
EaeI	YGGCCR	2 cut(s)	3, 441
EagI	CGGCCG	1 cut(s)	441
Eam1104I	CTCTTC	2 cut(s)	99, 661
EarI	CTCTTC	2 cut(s)	99, 661
EciI	GGCGGA	3 cut(s)	406, 633, 638
EclXI	CGGCCG	1 cut(s)	441
Eco105I	TACGTA	1 cut(s)	396
Eco52I	CGGCCG	1 cut(s)	441
Eco88I	CYCGRG	1 cut(s)	483
EcoO109I	RGGNCCY	1 cut(s)	356
EcoRII	CCWGG	1 cut(s)	647
FaeI	CATG	1 cut(s)	622
FaiI	YATR	7 cut(s)	15, 77, 286, 431, 575, 599, 620
FaqI	GGGAC	1 cut(s)	151
FatI	CATG	1 cut(s)	618
FblI	GTMKAC	1 cut(s)	213
Fnu4HI	GCNGC	8 cut(s)	318, 321, 324, 339, 420, 441, 444, 453
FokI	GGATG	3 cut(s)	130, 192, 590
Fsp4HI	GCNGC	8 cut(s)	318, 321, 324, 339, 420, 441, 444, 453
FspBI	CTAG	1 cut(s)	447
GlaI	GCGC	1 cut(s)	588
GluI	GCNGC	8 cut(s)	318, 321, 324, 339, 420, 441, 444, 453
HaeII	RGCGCY	1 cut(s)	590
HaeIII	GGCC	4 cut(s)	5, 358, 443, 555
HapII	CCGG	5 cut(s)	217, 226, 407, 484, 515
HhaI	GCGC	1 cut(s)	589
Hin1II	CATG	1 cut(s)	622
Hin6I	GCGC	1 cut(s)	587
HinP1I	GCGC	1 cut(s)	587
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HinfI	GANTC	6 cut(s)	91, 128, 222, 256, 388, 640
HpaII	CCGG	5 cut(s)	217, 226, 407, 484, 515
HphI	GGTGA	1 cut(s)	649
Hpy166II	GTNNAC	3 cut(s)	40, 214, 616
Hpy188I	TCNGA	7 cut(s)	90, 234, 253, 351, 511, 661, 682
Hpy188III	TCNNGA	2 cut(s)	174, 260
Hpy8I	GTNNAC	3 cut(s)	40, 214, 616
Hpy99I	CGWCG	2 cut(s)	335, 686
HpyCH4III	ACNGT	1 cut(s)	459
HpyCH4IV	ACGT	4 cut(s)	21, 268, 333, 395
HpyF10VI	GCNNNNNNNGC	7 cut(s)	202, 323, 344, 416, 449, 452, 607
HpyF3I	CTNAG	2 cut(s)	149, 303
HpySE526I	ACGT	4 cut(s)	21, 268, 333, 395
Hsp92II	CATG	1 cut(s)	622
HspAI	GCGC	1 cut(s)	587
Kzo9I	GATC	5 cut(s)	7, 342, 434, 506, 651
LmnI	GCTCC	2 cut(s)	262, 511
Lsp1109I	GCAGC	2 cut(s)	310, 464
LweI	GCATC	1 cut(s)	214
MaeI	CTAG	1 cut(s)	447
MaeII	ACGT	4 cut(s)	21, 268, 333, 395
MaeIII	GTNAC	1 cut(s)	425
MalI	GATC	5 cut(s)	9, 344, 436, 508, 653
MbiI	CCGCTC	1 cut(s)	498
MboI	GATC	5 cut(s)	7, 342, 434, 506, 651
MboII	GAAGA	2 cut(s)	86, 648
MflI	RGATCY	1 cut(s)	651
MhlI	GDGCHC	1 cut(s)	27
MluCI	AATT	4 cut(s)	81, 604, 664, 676
MlyI	GAGTC	2 cut(s)	85, 649
MmeI	TCCRAC	4 cut(s)	113, 212, 684, 705
MseI	TTAA	1 cut(s)	706
MspI	CCGG	5 cut(s)	217, 226, 407, 484, 515
MspR9I	CCNGG	5 cut(s)	218, 484, 485, 516, 649
Mva1269I	GAATGC	1 cut(s)	636
MvaI	CCWGG	1 cut(s)	649
MvnI	CGCG	1 cut(s)	422
MwoI	GCNNNNNNNGC	7 cut(s)	202, 323, 344, 416, 449, 452, 607
NciI	CCSGG	4 cut(s)	218, 484, 485, 516
NdeII	GATC	5 cut(s)	7, 342, 434, 506, 651
NlaIII	CATG	1 cut(s)	622
NlaIV	GGNNCC	2 cut(s)	264, 513
NmuCI	GTSAC	1 cut(s)	425
NotI	GCGGCCGC	1 cut(s)	441
PcsI	WCGNNNNNNNCGW	3 cut(s)	179, 265, 392
PctI	GAATGC	1 cut(s)	636
PfeI	GAWTC	4 cut(s)	128, 222, 256, 388
Pfl23II	CGTACG	1 cut(s)	327
PkrI	GCNGC	8 cut(s)	319, 322, 325, 340, 421, 442, 445, 454
Ple19I	CGATCG	1 cut(s)	345
PleI	GAGTC	2 cut(s)	85, 648
PpsI	GAGTC	2 cut(s)	85, 648
Ppu21I	YACGTR	2 cut(s)	269, 396
Psp6I	CCWGG	1 cut(s)	647
PspGI	CCWGG	1 cut(s)	647
PspLI	CGTACG	1 cut(s)	327
PspN4I	GGNNCC	2 cut(s)	264, 513
PspPI	GGNCC	2 cut(s)	356, 553
PsuI	RGATCY	1 cut(s)	651
PvuI	CGATCG	1 cut(s)	345
RgaI	GCGATCGC	1 cut(s)	345
RsaI	GTAC	2 cut(s)	329, 398
RsaNI	GTAC	2 cut(s)	328, 397
SaqAI	TTAA	1 cut(s)	706
SatI	GCNGC	8 cut(s)	318, 321, 324, 339, 420, 441, 444, 453
Sau3AI	GATC	5 cut(s)	7, 342, 434, 506, 651
Sau96I	GGNCC	2 cut(s)	356, 553
SchI	GAGTC	2 cut(s)	85, 649
ScrFI	CCNGG	5 cut(s)	218, 484, 485, 516, 649
SduI	GDGCHC	1 cut(s)	27
SetI	ASST	6 cut(s)	24, 59, 124, 271, 336, 398
SfaAI	GCGATCGC	1 cut(s)	345
SfaNI	GCATC	1 cut(s)	214
SgfI	GCGATCGC	1 cut(s)	345
SmaI	CCCGGG	1 cut(s)	485
SnaBI	TACGTA	1 cut(s)	396
Sse9I	AATT	4 cut(s)	81, 604, 664, 676
SspMI	CTAG	1 cut(s)	447
StyD4I	CCNGG	5 cut(s)	216, 482, 483, 514, 647
TaaI	ACNGT	1 cut(s)	459
TaiI	ACGT	4 cut(s)	24, 271, 336, 398
TaqI	TCGA	3 cut(s)	182, 386, 461
TasI	AATT	4 cut(s)	81, 604, 664, 676
TauI	GCSGC	6 cut(s)	320, 323, 341, 422, 443, 446
TfiI	GAWTC	4 cut(s)	128, 222, 256, 388
Tru1I	TTAA	1 cut(s)	706
Tru9I	TTAA	1 cut(s)	706
TseFI	GTSAC	1 cut(s)	425
TseI	GCWGC	2 cut(s)	323, 452
Tsp45I	GTSAC	1 cut(s)	425
TspGWI	ACGGA	2 cut(s)	153, 699
TspMI	CCCGGG	1 cut(s)	483
XapI	RAATTY	3 cut(s)	81, 604, 676
XmaI	CCCGGG	1 cut(s)	483
XmiI	GTMKAC	1 cut(s)	213
XspI	CTAG	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.