Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0012077

Physical Location & Seq

Genomic Coordinates Reverse (-)

65707648 .. 65711866

Gene Structure 4219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG387300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCGGATCCGTATGGCAACGTGCCCAAAAGTGACGACCAGCCATCCAACTCCAACCCACCTTTCTTTATTCAACTTCCTCCAACCAGCAGCTCCTCCGATGTCAATGATCAACAGCATCACGACCTCTTGGGCCTCCGCTCTCCGACCGGTGGGTCCATTTCTTCGCCAGGGAGACACCCGCTTTACCGAGGGATCCGGTGCCGGAGCGGGAAATGGGTGTCCGAGATTCGAGAGCCACGTAAGTCCAACCGCATATGGCTGGGCACGTATGCCAAGCCCGAGATGGCCGCCGCGGCTTATGACGTGGCGGCCATAGCCCTTAAAGGGCCTGATACTGCCTTGAATTTCCCCAACGCCCTAATTACTTATCCGATCCCGGCTTCTTCGGCGGCCAGTGACATAAGGGCTGCGGCAGCTAGGGCTGCCGCGTCTAGGGCGGAGAACATTAAGCCGGGAGAGAGCTCATCCGGTGGTGCGGCGGGTCGGGTTGAAAATGTGGATAGGTCAGGTGGTGGTCGTGGTACTGGAGTGACGTCAGATGACGGTGGCGGCTGTCAGGAGTTTATGGACGAGGAAGCGCTGCTGAATATGCCTAATTTGCTGGCGGACATGGCGGAGGGAATGCTGGTGAGTCCGCCGAGAGATCCGGCTGATGATTCGCCGGGAAATTCGGACGGAGAAAGTCTGTGGAGCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0043207 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

233

Amino Acids

24.43

Weight (kDa)

4.89

Isoelectric Point (pI)

48.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	61 - 110	2.7e-10	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12630 AT5G52020
fragaria_vesca	FvH4_7g28960
malus_domestica	MD01G1196300.v1.1 MD07G1263200.v1.1
prunus_persica	Prupe.2G289600_v2.0.a1
pyrus_communis	pycom01g20680 pycom07g24220
rosa_chinensis	RchiOBHm_Chr1g0376651
rosa_laevigata	RLG00000026584
rosa_multiflora	Rmu_co8365147.1_g000001 Rmu_sc0005594.1_g000003
rosa_roxburghii	Rroxscaffold_4G00281910
rosa_rugosa	Rorug01G0397100
rosa_samantha	Rh1AG414000 Rh1BG373400 Rh1CG387300 Rh1DG404400
rosa_wichuraiana	Rw1G036320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	154
AatII	GACGTC	1 cut(s)	539
AccB1I	GGYRCC	1 cut(s)	201
AccBSI	CCGCTC	2 cut(s)	141, 210
AccII	CGCG	2 cut(s)	296, 431
AclWI	GGATC	6 cut(s)	2, 15, 190, 203, 370, 641
AcoI	YGGCCR	3 cut(s)	288, 312, 393
AcsI	RAATTY	2 cut(s)	346, 670
AcyI	GRCGYC	1 cut(s)	536
AfaI	GTAC	1 cut(s)	526
AfeI	AGCGCT	1 cut(s)	582
AfiI	CCNNNNNNNGG	3 cut(s)	152, 327, 435
AgeI	ACCGGT	1 cut(s)	149
AgsI	TTSAA	3 cut(s)	74, 346, 494
AjiI	CACGTC	1 cut(s)	307
AjnI	CCWGG	1 cut(s)	169
AjuI	GAANNNNNNNTTGG	2 cut(s)	47, 79
AluBI	AGCT	4 cut(s)	93, 419, 465, 696
AluI	AGCT	4 cut(s)	93, 419, 465, 696
Alw21I	GWGCWC	1 cut(s)	467
Alw26I	GTCTC	1 cut(s)	169
AlwI	GGATC	6 cut(s)	2, 15, 190, 203, 370, 641
Ama87I	CYCGRG	1 cut(s)	281
Aor51HI	AGCGCT	1 cut(s)	582
AoxI	GGCC	5 cut(s)	133, 288, 312, 329, 393
ApeKI	GCWGC	5 cut(s)	90, 410, 416, 425, 583
ApoI	RAATTY	2 cut(s)	346, 670
AsiGI	ACCGGT	1 cut(s)	149
AspLEI	GCGC	1 cut(s)	583
AspS9I	GGNCC	3 cut(s)	133, 156, 329
AsuC2I	CCSGG	3 cut(s)	380, 456, 666
AsuHPI	GGTGA	1 cut(s)	643
AvaI	CYCGRG	1 cut(s)	281
AvaII	GGWCC	1 cut(s)	156
BaeGI	GKGCMC	2 cut(s)	27, 269
BaeI	ACNNNNGTAYC	2 cut(s)	516, 549
BamHI	GGATCC	2 cut(s)	7, 195
BanI	GGYRCC	1 cut(s)	201
BanII	GRGCYC	1 cut(s)	467
Bbv12I	GWGCWC	1 cut(s)	467
BbvI	GCAGC	5 cut(s)	102, 397, 412, 428, 570
BccI	CCATC	2 cut(s)	52, 280
BciT130I	CCWGG	1 cut(s)	171
BclI	TGATCA	1 cut(s)	109
BcnI	CCSGG	3 cut(s)	380, 456, 666
BcoDI	GTCTC	1 cut(s)	169
BfaI	CTAG	2 cut(s)	420, 435
BfoI	RGCGCY	1 cut(s)	584
BglI	GCCNNNNNGGC	1 cut(s)	296
Bme1390I	CCNGG	4 cut(s)	171, 380, 456, 666
Bme18I	GGWCC	1 cut(s)	156
BmeT110I	CYCGRG	1 cut(s)	281
BmgBI	CACGTC	1 cut(s)	307
BmgT120I	GGNCC	3 cut(s)	133, 156, 329
BmiI	GGNNCC	4 cut(s)	9, 157, 197, 203
BmrFI	CCNGG	4 cut(s)	171, 380, 456, 666
BmsI	GCATC	1 cut(s)	127
BpmI	CTGGAG	1 cut(s)	549
BpuMI	CCSGG	3 cut(s)	380, 456, 666
BsaAI	YACGTR	2 cut(s)	242, 270
BsaHI	GRCGYC	1 cut(s)	536
BsaJI	CCNNGG	3 cut(s)	170, 190, 294
BsaWI	WCCGGW	3 cut(s)	149, 198, 470
Bsc4I	CCNNNNNNNGG	3 cut(s)	152, 327, 435
Bse118I	RCCGGY	1 cut(s)	149
Bse1I	ACTGG	2 cut(s)	396, 532
BseBI	CCWGG	1 cut(s)	171
BseDI	CCNNGG	3 cut(s)	170, 190, 294
BseGI	GGATG	2 cut(s)	44, 467
BseLI	CCNNNNNNNGG	3 cut(s)	152, 327, 435
BseNI	ACTGG	2 cut(s)	396, 532
BseRI	GAGGAG	1 cut(s)	85
BseSI	GKGCMC	2 cut(s)	27, 269
BseXI	GCAGC	5 cut(s)	102, 397, 412, 428, 570
BseYI	CCCAGC	1 cut(s)	262
Bsh1236I	CGCG	2 cut(s)	296, 431
Bsh1285I	CGRYCG	1 cut(s)	150
BshFI	GGCC	5 cut(s)	135, 290, 314, 331, 395
BshNI	GGYRCC	1 cut(s)	201
BshTI	ACCGGT	1 cut(s)	149
BsiEI	CGRYCG	1 cut(s)	150
BsiHKAI	GWGCWC	1 cut(s)	467
BsiHKCI	CYCGRG	1 cut(s)	281
BsiSI	CCGG	8 cut(s)	150, 199, 205, 380, 455, 471, 650, 665
BslI	CCNNNNNNNGG	3 cut(s)	152, 327, 435
BsmAI	GTCTC	1 cut(s)	169
BsmI	GAATGC	1 cut(s)	630
BsnI	GGCC	5 cut(s)	135, 290, 314, 331, 395
BsoBI	CYCGRG	1 cut(s)	281
Bsp1286I	GDGCHC	3 cut(s)	27, 269, 467
Bsp143I	GATC	5 cut(s)	7, 109, 195, 375, 646
BspANI	GGCC	5 cut(s)	135, 290, 314, 331, 395
BspFNI	CGCG	2 cut(s)	296, 431
BspLI	GGNNCC	4 cut(s)	9, 157, 197, 203
BspPI	GGATC	6 cut(s)	2, 15, 190, 203, 370, 641
BspT107I	GGYRCC	1 cut(s)	201
BsrBI	CCGCTC	2 cut(s)	141, 210
BsrFI	RCCGGY	1 cut(s)	149
BsrI	ACTGG	2 cut(s)	396, 532
BssAI	RCCGGY	1 cut(s)	149
BssECI	CCNNGG	3 cut(s)	170, 190, 294
BssMI	GATC	5 cut(s)	7, 109, 195, 375, 646
BssNI	GRCGYC	1 cut(s)	536
Bst2UI	CCWGG	1 cut(s)	171
Bst4CI	ACNGT	1 cut(s)	548
BstACI	GRCGYC	1 cut(s)	536
BstBAI	YACGTR	2 cut(s)	242, 270
BstC8I	GCNNGC	1 cut(s)	606
BstDSI	CCRYGG	1 cut(s)	294
BstF5I	GGATG	2 cut(s)	44, 467
BstFNI	CGCG	2 cut(s)	296, 431
BstH2I	RGCGCY	1 cut(s)	584
BstHHI	GCGC	1 cut(s)	583
BstKTI	GATC	5 cut(s)	10, 112, 198, 378, 649
BstMAI	GTCTC	1 cut(s)	169
BstMBI	GATC	5 cut(s)	7, 109, 195, 375, 646
BstMCI	CGRYCG	1 cut(s)	150
BstNI	CCWGG	1 cut(s)	171
BstSCI	CCNGG	4 cut(s)	169, 378, 454, 664
BstSLI	GKGCMC	2 cut(s)	27, 269
BstUI	CGCG	2 cut(s)	296, 431
BstV1I	GCAGC	5 cut(s)	102, 397, 412, 428, 570
BstX2I	RGATCY	3 cut(s)	7, 195, 646
BstYI	RGATCY	3 cut(s)	7, 195, 646
BsuRI	GGCC	5 cut(s)	135, 290, 314, 331, 395
BtgI	CCRYGG	1 cut(s)	294
BtrI	CACGTC	1 cut(s)	307
BtsCI	GGATG	2 cut(s)	44, 467
BtsIMutI	CAGTG	1 cut(s)	403
Cac8I	GCNNGC	1 cut(s)	606
CfoI	GCGC	1 cut(s)	583
Cfr10I	RCCGGY	1 cut(s)	149
Cfr13I	GGNCC	3 cut(s)	133, 156, 329
Cfr42I	CCGCGG	1 cut(s)	297
CseI	GACGC	1 cut(s)	420
Csp6I	GTAC	1 cut(s)	525
CspAI	ACCGGT	1 cut(s)	149
CviAII	CATG	1 cut(s)	613
CviQI	GTAC	1 cut(s)	525
DpnI	GATC	5 cut(s)	9, 111, 197, 377, 648
DpnII	GATC	5 cut(s)	7, 109, 195, 375, 646
DrdI	GACNNNNNNGTC	1 cut(s)	154
DseDI	GACNNNNNNGTC	1 cut(s)	154
EaeI	YGGCCR	3 cut(s)	288, 312, 393
EciI	GGCGGA	5 cut(s)	20, 455, 623, 627, 632
Ecl136II	GAGCTC	1 cut(s)	465
Eco24I	GRGCYC	1 cut(s)	467
Eco47I	GGWCC	1 cut(s)	156
Eco47III	AGCGCT	1 cut(s)	582
Eco53kI	GAGCTC	1 cut(s)	465
Eco88I	CYCGRG	1 cut(s)	281
EcoICRI	GAGCTC	1 cut(s)	465
EcoO109I	RGGNCCY	1 cut(s)	329
EcoRII	CCWGG	1 cut(s)	169
EcoT38I	GRGCYC	1 cut(s)	467
FaeI	CATG	1 cut(s)	616
FatI	CATG	1 cut(s)	612
FauI	CCCGC	3 cut(s)	189, 203, 475
FauNDI	CATATG	1 cut(s)	257
FbaI	TGATCA	1 cut(s)	109
FokI	GGATG	2 cut(s)	31, 454
FriOI	GRGCYC	1 cut(s)	467
FspBI	CTAG	2 cut(s)	420, 435
GlaI	GCGC	1 cut(s)	582
GsaI	CCCAGC	1 cut(s)	266
GsuI	CTGGAG	1 cut(s)	549
HaeII	RGCGCY	1 cut(s)	584
HaeIII	GGCC	5 cut(s)	135, 290, 314, 331, 395
HapII	CCGG	8 cut(s)	150, 199, 205, 380, 455, 471, 650, 665
HgaI	GACGC	1 cut(s)	420
HhaI	GCGC	1 cut(s)	583
Hin1I	GRCGYC	1 cut(s)	536
Hin1II	CATG	1 cut(s)	616
Hin6I	GCGC	1 cut(s)	581
HinP1I	GCGC	1 cut(s)	581
HinfI	GANTC	3 cut(s)	229, 634, 659
HpaII	CCGG	8 cut(s)	150, 199, 205, 380, 455, 471, 650, 665
HphI	GGTGA	1 cut(s)	643
Hpy188I	TCNGA	6 cut(s)	100, 147, 226, 375, 541, 676
Hpy188III	TCNNGA	3 cut(s)	122, 233, 560
HpyCH4III	ACNGT	1 cut(s)	548
HpyCH4IV	ACGT	5 cut(s)	21, 241, 269, 306, 536
HpySE526I	ACGT	5 cut(s)	21, 241, 269, 306, 536
Hsp92I	GRCGYC	1 cut(s)	536
Hsp92II	CATG	1 cut(s)	616
HspAI	GCGC	1 cut(s)	581
Ksp22I	TGATCA	1 cut(s)	109
KspI	CCGCGG	1 cut(s)	297
Kzo9I	GATC	5 cut(s)	7, 109, 195, 375, 646
LmnI	GCTCC	3 cut(s)	98, 207, 693
Lsp1109I	GCAGC	5 cut(s)	102, 397, 412, 428, 570
LweI	GCATC	1 cut(s)	127
MaeI	CTAG	2 cut(s)	420, 435
MaeII	ACGT	5 cut(s)	21, 241, 269, 306, 536
MaeIII	GTNAC	3 cut(s)	32, 398, 532
MalI	GATC	5 cut(s)	9, 111, 197, 377, 648
MbiI	CCGCTC	2 cut(s)	141, 210
MboI	GATC	5 cut(s)	7, 109, 195, 375, 646
MboII	GAAGA	2 cut(s)	156, 378
MflI	RGATCY	3 cut(s)	7, 195, 646
MhlI	GDGCHC	3 cut(s)	27, 269, 467
MluCI	AATT	4 cut(s)	346, 363, 598, 670
MlyI	GAGTC	1 cut(s)	643
MmeI	TCCRAC	5 cut(s)	72, 78, 107, 170, 273
MnlI	CCTC	7 cut(s)	90, 106, 137, 146, 185, 568, 613
MseI	TTAA	3 cut(s)	324, 450, 700
MspA1I	CMGCKG	1 cut(s)	296
MspI	CCGG	8 cut(s)	150, 199, 205, 380, 455, 471, 650, 665
MspR9I	CCNGG	4 cut(s)	171, 380, 456, 666
Mva1269I	GAATGC	1 cut(s)	630
MvaI	CCWGG	1 cut(s)	171
MvnI	CGCG	2 cut(s)	296, 431
NciI	CCSGG	3 cut(s)	380, 456, 666
NdeI	CATATG	1 cut(s)	257
NdeII	GATC	5 cut(s)	7, 109, 195, 375, 646
NlaIII	CATG	1 cut(s)	616
NlaIV	GGNNCC	4 cut(s)	9, 157, 197, 203
NmeAIII	GCCGAG	1 cut(s)	666
NmuCI	GTSAC	3 cut(s)	32, 398, 532
PcsI	WCGNNNNNNNCGW	1 cut(s)	238
PctI	GAATGC	1 cut(s)	630
PfeI	GAWTC	2 cut(s)	229, 659
PinAI	ACCGGT	1 cut(s)	149
PleI	GAGTC	1 cut(s)	642
PpsI	GAGTC	1 cut(s)	642
Ppu21I	YACGTR	2 cut(s)	242, 270
Psp124BI	GAGCTC	1 cut(s)	467
Psp6I	CCWGG	1 cut(s)	169
PspFI	CCCAGC	1 cut(s)	262
PspGI	CCWGG	1 cut(s)	169
PspN4I	GGNNCC	4 cut(s)	9, 157, 197, 203
PspPI	GGNCC	3 cut(s)	133, 156, 329
PsuI	RGATCY	3 cut(s)	7, 195, 646
RsaI	GTAC	1 cut(s)	526
RsaNI	GTAC	1 cut(s)	525
SacI	GAGCTC	1 cut(s)	467
SacII	CCGCGG	1 cut(s)	297
SaqAI	TTAA	3 cut(s)	324, 450, 700
Sau3AI	GATC	5 cut(s)	7, 109, 195, 375, 646
Sau96I	GGNCC	3 cut(s)	133, 156, 329
SchI	GAGTC	1 cut(s)	643
ScrFI	CCNGG	4 cut(s)	171, 380, 456, 666
SduI	GDGCHC	3 cut(s)	27, 269, 467
SfaNI	GCATC	1 cut(s)	127
Sfr303I	CCGCGG	1 cut(s)	297
SgrBI	CCGCGG	1 cut(s)	297
SinI	GGWCC	1 cut(s)	156
Sse9I	AATT	4 cut(s)	346, 363, 598, 670
SspMI	CTAG	2 cut(s)	420, 435
SstI	GAGCTC	1 cut(s)	467
StyD4I	CCNGG	4 cut(s)	169, 378, 454, 664
TaaI	ACNGT	1 cut(s)	548
TaiI	ACGT	5 cut(s)	24, 244, 272, 309, 539
TaqI	TCGA	1 cut(s)	232
TasI	AATT	4 cut(s)	346, 363, 598, 670
TauI	GCSGC	9 cut(s)	293, 296, 299, 314, 395, 416, 431, 482, 555
TfiI	GAWTC	2 cut(s)	229, 659
Tru1I	TTAA	3 cut(s)	324, 450, 700
Tru9I	TTAA	3 cut(s)	324, 450, 700
TscAI	CASTG	1 cut(s)	403
TseFI	GTSAC	3 cut(s)	32, 398, 532
TseI	GCWGC	5 cut(s)	90, 410, 416, 425, 583
Tsp45I	GTSAC	3 cut(s)	32, 398, 532
TspGWI	ACGGA	1 cut(s)	693
TspRI	CASTG	1 cut(s)	403
VpaK11BI	GGWCC	1 cut(s)	156
XapI	RAATTY	2 cut(s)	346, 670
XcmI	CCANNNNNNNNNTGG	1 cut(s)	283
XspI	CTAG	2 cut(s)	420, 435
ZraI	GACGTC	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.