Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006450

Physical Location & Seq

Genomic Coordinates Reverse (-)

4344943 .. 4348390

Gene Structure 3448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G12750.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGAGGAGTAGAGATATGGAGAGAGGTAGGAAACACAGAGGGGACACCCAGTGGACGGCTTGGCTGACTCCAACAATTGTCGTGGCTAATGTCTCCATCTTCATCGTTGTCATGTACACCAACGACTGCCCTAAGACAACCACGGGAGCCAACGGAGATTGCGTTGCAAAGCTTCTCCGCAGGTTCTCGTTTCAGCCACTCAGAGAGAACCCTTTCTTGGGTCCATCTTCTTCAACATTGGAGAAATTGGGAGCTTTGGATTGGAAGAAAGTCGTGCAAGGAAATGAAAAATGGAGGCTCATCACTGCTATGTGGCTCCATGCCGGTATCATTCACCTTGTTATGAATATGTTTGATGTGATCATCTTCGGTATCCGCCTTGAGCAACAGTTTGGCTTCATAAGGATTGGGCTCATCTATCTGATTTCGGGATTTGGCGGAAGCATTCTCTCAGCTCTCTTCCTTCAAAAAAGCATCTCTGTTGGTGCCTCGGGTGCTCTCCTTGGACTCATGGGAGCAATGTTATCTGAGCTGCTCACCAACTGGACTATCTACAAGAGCAAGCTTTGTGCTTTGTTATCGTTCTTGTTCATCATCGCAATCAATTTGGCAATAGGTTTGCTTCCTTGGGTAGACAACTTTGCTCACATTGGCGGTCTCTTGACTGGGTTTTGCCTTGGGTTTATCCTACTGATGCAGCCTCAGTCTGGGTGGGAAGAGTTCCGCAACTCTTCTCAGTACGGTGCCCGTGCTAGATCAAAATATAACCCGTGCCAGTACGTGTTGTTCTTTGTTGCCGCTGTTTTGGTTGTCGCCGGTTTAACAGTTGGGTTGGTGATGCTGTTCGACGGAGAGAATGGGAACAAGCATTGCAAATGGTGTCATCGCCTAGACTGTTATCCTACTTCTAAATGGTCTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005911 GO:0006508 GO:0006807 GO:0006928 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008283 GO:0009506 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0016787 GO:0017171 GO:0019222 GO:0019538 GO:0023051 GO:0030054 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0055044 GO:0060255 GO:0061136 GO:0065007 GO:0070011 GO:0070201 GO:0071704 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:0140096 GO:1901184 GO:1901564 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

307

Amino Acids

34.29

Weight (kDa)

9.34

Isoelectric Point (pI)

25.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	95 - 190	3.9e-31	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12750 AT1G12750 AT1G12750 AT1G12750 AT1G12750 AT1G12750 AT1G12750 AT1G63120 AT4G23070
fragaria_vesca	FvH4_5g01700 FvH4_5g01700 FvH4_5g01700
malus_domestica	MD04G1065500.v1.1
prunus_persica	Prupe.5G092700_v2.0.a1
pyrus_communis	pycom04g05900 pycom06g07360
rosa_chinensis	RchiOBHm_Chr7g0199021
rosa_laevigata	RLG00000003823
rosa_multiflora	Rmu_sc0006266.1_g000029
rosa_roxburghii	Rroxscaffold_3G00257210
rosa_rugosa	Rorug07G0052100
rosa_samantha	Rh7AG175200 Rh7BG178600 Rh7CG184400 Rh7DG178000
rosa_wichuraiana	Rw7G015370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	171
AccB1I	GGYRCC	2 cut(s)	485, 743
AccI	GTMKAC	1 cut(s)	633
AciI	CCGC	6 cut(s)	178, 376, 438, 654, 724, 798
AdeI	CACNNNGTG	1 cut(s)	51
AfaI	GTAC	3 cut(s)	116, 740, 779
AfiI	CCNNNNNNNGG	4 cut(s)	55, 217, 218, 707
AflIII	ACRYGT	1 cut(s)	780
AgsI	TTSAA	2 cut(s)	234, 467
AjuI	GAANNNNNNNTTGG	2 cut(s)	200, 232
AluBI	AGCT	5 cut(s)	172, 254, 455, 532, 565
AluI	AGCT	5 cut(s)	172, 254, 455, 532, 565
Alw21I	GWGCWC	1 cut(s)	499
Alw26I	GTCTC	2 cut(s)	97, 662
Ama87I	CYCGRG	1 cut(s)	490
ApeKI	GCWGC	2 cut(s)	532, 697
Asp700I	GAANNNNTTC	1 cut(s)	212
AspS9I	GGNCC	1 cut(s)	221
AsuHPI	GGTGA	3 cut(s)	326, 529, 847
AvaI	CYCGRG	1 cut(s)	490
AvaII	GGWCC	1 cut(s)	221
BaeGI	GKGCMC	1 cut(s)	748
BanI	GGYRCC	2 cut(s)	485, 743
BanII	GRGCYC	1 cut(s)	414
Bbv12I	GWGCWC	1 cut(s)	499
BbvI	GCAGC	2 cut(s)	519, 709
BccI	CCATC	2 cut(s)	104, 232
BceAI	ACGGC	1 cut(s)	72
BciVI	GTATCC	1 cut(s)	383
BclI	TGATCA	1 cut(s)	360
BcoDI	GTCTC	2 cut(s)	97, 662
BfaI	CTAG	2 cut(s)	753, 890
BfuAI	ACCTGC	1 cut(s)	171
BfuI	GTATCC	1 cut(s)	383
BisI	GCNGC	3 cut(s)	533, 698, 798
BlsI	GCNGC	3 cut(s)	534, 699, 799
Bme18I	GGWCC	1 cut(s)	221
BmeT110I	CYCGRG	1 cut(s)	490
BmgT120I	GGNCC	1 cut(s)	221
BmiI	GGNNCC	5 cut(s)	148, 222, 317, 487, 745
BmrI	ACTGGG	2 cut(s)	43, 675
BmsI	GCATC	3 cut(s)	483, 684, 828
BmuI	ACTGGG	2 cut(s)	43, 675
BpuEI	CTTGAG	1 cut(s)	401
BsaAI	YACGTR	1 cut(s)	781
BsaI	GGTCTC	1 cut(s)	662
BsaJI	CCNNGG	5 cut(s)	141, 489, 502, 626, 676
BsaXI	ACNNNNNCTCC	2 cut(s)	147, 177
Bsc4I	CCNNNNNNNGG	4 cut(s)	55, 217, 218, 707
Bse118I	RCCGGY	2 cut(s)	323, 815
Bse1I	ACTGG	4 cut(s)	49, 548, 670, 775
Bse3DI	GCAATG	2 cut(s)	525, 868
BseDI	CCNNGG	5 cut(s)	141, 489, 502, 626, 676
BseLI	CCNNNNNNNGG	4 cut(s)	55, 217, 218, 707
BseMI	GCAATG	2 cut(s)	525, 868
BseMII	CTCAG	5 cut(s)	214, 465, 519, 716, 749
BseNI	ACTGG	4 cut(s)	49, 548, 670, 775
BseRI	GAGGAG	1 cut(s)	19
BseSI	GKGCMC	1 cut(s)	748
BseXI	GCAGC	2 cut(s)	519, 709
BshNI	GGYRCC	2 cut(s)	485, 743
BsiHKAI	GWGCWC	1 cut(s)	499
BsiHKCI	CYCGRG	1 cut(s)	490
BsiSI	CCGG	2 cut(s)	324, 816
BslFI	GGGAC	1 cut(s)	56
BslI	CCNNNNNNNGG	4 cut(s)	55, 217, 218, 707
BsmAI	GTCTC	2 cut(s)	97, 662
BsmFI	GGGAC	1 cut(s)	56
BsmI	GAATGC	1 cut(s)	444
Bso31I	GGTCTC	1 cut(s)	662
BsoBI	CYCGRG	1 cut(s)	490
Bsp1286I	GDGCHC	3 cut(s)	414, 499, 748
Bsp1407I	TGTACA	1 cut(s)	114
Bsp143I	GATC	2 cut(s)	360, 755
BspACI	CCGC	6 cut(s)	178, 376, 438, 654, 724, 798
BspCNI	CTCAG	5 cut(s)	213, 464, 520, 715, 748
BspLI	GGNNCC	5 cut(s)	148, 222, 317, 487, 745
BspMI	ACCTGC	1 cut(s)	171
BspT107I	GGYRCC	2 cut(s)	485, 743
BspTNI	GGTCTC	1 cut(s)	662
BsrDI	GCAATG	2 cut(s)	525, 868
BsrFI	RCCGGY	2 cut(s)	323, 815
BsrGI	TGTACA	1 cut(s)	114
BsrI	ACTGG	4 cut(s)	49, 548, 670, 775
BssAI	RCCGGY	2 cut(s)	323, 815
BssECI	CCNNGG	5 cut(s)	141, 489, 502, 626, 676
BssMI	GATC	2 cut(s)	360, 755
BssT1I	CCWWGG	3 cut(s)	502, 626, 676
Bst4CI	ACNGT	4 cut(s)	390, 743, 826, 896
Bst6I	CTCTTC	3 cut(s)	464, 711, 736
BstAUI	TGTACA	1 cut(s)	114
BstBAI	YACGTR	1 cut(s)	781
BstC8I	GCNNGC	1 cut(s)	563
BstDEI	CTNAG	6 cut(s)	132, 200, 451, 528, 702, 735
BstDSI	CCRYGG	1 cut(s)	141
BstKTI	GATC	2 cut(s)	363, 758
BstMAI	GTCTC	2 cut(s)	97, 662
BstMBI	GATC	2 cut(s)	360, 755
BstMWI	GCNNNNNNNGC	1 cut(s)	494
BstSLI	GKGCMC	1 cut(s)	748
BstV1I	GCAGC	2 cut(s)	519, 709
BsuI	GTATCC	1 cut(s)	383
BtgI	CCRYGG	1 cut(s)	141
BtgZI	GCGATG	2 cut(s)	580, 869
BtsI	GCAGTG	1 cut(s)	303
BtsIMutI	CAGTG	2 cut(s)	56, 303
BveI	ACCTGC	1 cut(s)	171
Cac8I	GCNNGC	1 cut(s)	563
Cfr10I	RCCGGY	2 cut(s)	323, 815
Cfr13I	GGNCC	1 cut(s)	221
Csp6I	GTAC	3 cut(s)	115, 739, 778
CspCI	CAANNNNNGTGG	2 cut(s)	63, 98
CviAII	CATG	3 cut(s)	112, 320, 511
CviQI	GTAC	3 cut(s)	115, 739, 778
DdeI	CTNAG	6 cut(s)	132, 200, 451, 528, 702, 735
DpnI	GATC	2 cut(s)	362, 757
DpnII	GATC	2 cut(s)	360, 755
DraIII	CACNNNGTG	1 cut(s)	51
Eam1104I	CTCTTC	3 cut(s)	464, 711, 736
EarI	CTCTTC	3 cut(s)	464, 711, 736
EciI	GGCGGA	2 cut(s)	365, 453
Eco130I	CCWWGG	3 cut(s)	502, 626, 676
Eco24I	GRGCYC	1 cut(s)	414
Eco31I	GGTCTC	1 cut(s)	662
Eco47I	GGWCC	1 cut(s)	221
Eco88I	CYCGRG	1 cut(s)	490
EcoT14I	CCWWGG	3 cut(s)	502, 626, 676
EcoT38I	GRGCYC	1 cut(s)	414
ErhI	CCWWGG	3 cut(s)	502, 626, 676
FaeI	CATG	3 cut(s)	115, 323, 514
FaiI	YATR	9 cut(s)	17, 113, 311, 321, 344, 350, 401, 512, 765
FaqI	GGGAC	1 cut(s)	56
FatI	CATG	3 cut(s)	111, 319, 510
FbaI	TGATCA	1 cut(s)	360
FblI	GTMKAC	1 cut(s)	633
Fnu4HI	GCNGC	3 cut(s)	533, 698, 798
FriOI	GRGCYC	1 cut(s)	414
Fsp4HI	GCNGC	3 cut(s)	533, 698, 798
FspBI	CTAG	2 cut(s)	753, 890
GluI	GCNGC	3 cut(s)	533, 698, 798
HapII	CCGG	2 cut(s)	324, 816
Hin1II	CATG	3 cut(s)	115, 323, 514
HindIII	AAGCTT	2 cut(s)	170, 563
HinfI	GANTC	2 cut(s)	67, 507
HpaII	CCGG	2 cut(s)	324, 816
HphI	GGTGA	3 cut(s)	326, 529, 847
Hpy166II	GTNNAC	3 cut(s)	54, 117, 634
Hpy188I	TCNGA	3 cut(s)	203, 423, 529
Hpy188III	TCNNGA	2 cut(s)	429, 661
Hpy8I	GTNNAC	3 cut(s)	54, 117, 634
Hpy99I	CGWCG	1 cut(s)	851
HpyAV	CCTTC	1 cut(s)	473
HpyCH4III	ACNGT	4 cut(s)	390, 743, 826, 896
HpyCH4IV	ACGT	1 cut(s)	780
HpyCH4V	TGCA	4 cut(s)	167, 277, 697, 873
HpyF10VI	GCNNNNNNNGC	1 cut(s)	494
HpyF3I	CTNAG	6 cut(s)	132, 200, 451, 528, 702, 735
HpySE526I	ACGT	1 cut(s)	780
Hsp92II	CATG	3 cut(s)	115, 323, 514
Ksp22I	TGATCA	1 cut(s)	360
Kzo9I	GATC	2 cut(s)	360, 755
LmnI	GCTCC	4 cut(s)	146, 251, 321, 515
LpnPI	CCDG	8 cut(s)	62, 166, 337, 529, 651, 693, 788, 829
Lsp1109I	GCAGC	2 cut(s)	519, 709
LweI	GCATC	3 cut(s)	483, 684, 828
MaeI	CTAG	2 cut(s)	753, 890
MaeII	ACGT	1 cut(s)	780
MalI	GATC	2 cut(s)	362, 757
MboI	GATC	2 cut(s)	360, 755
MboII	GAAGA	8 cut(s)	91, 219, 222, 277, 358, 451, 723, 728
MfeI	CAATTG	1 cut(s)	75
MhlI	GDGCHC	3 cut(s)	414, 499, 748
MluCI	AATT	3 cut(s)	75, 245, 604
MlyI	GAGTC	2 cut(s)	61, 501
MmeI	TCCRAC	1 cut(s)	95
MnlI	CCTC	5 cut(s)	17, 32, 288, 499, 711
MroXI	GAANNNNTTC	1 cut(s)	212
MseI	TTAA	1 cut(s)	821
MslI	CAYNNNNRTG	1 cut(s)	308
MspA1I	CMGCKG	1 cut(s)	800
MspI	CCGG	2 cut(s)	324, 816
MunI	CAATTG	1 cut(s)	75
Mva1269I	GAATGC	1 cut(s)	444
MwoI	GCNNNNNNNGC	1 cut(s)	494
NdeII	GATC	2 cut(s)	360, 755
NlaIII	CATG	3 cut(s)	115, 323, 514
NlaIV	GGNNCC	5 cut(s)	148, 222, 317, 487, 745
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PctI	GAATGC	1 cut(s)	444
PdmI	GAANNNNTTC	1 cut(s)	212
PkrI	GCNGC	3 cut(s)	534, 699, 799
PleI	GAGTC	2 cut(s)	61, 501
PpsI	GAGTC	2 cut(s)	61, 501
Ppu21I	YACGTR	1 cut(s)	781
PspN4I	GGNNCC	5 cut(s)	148, 222, 317, 487, 745
PspPI	GGNCC	1 cut(s)	221
PsrI	GAACNNNNNNTAC	2 cut(s)	770, 802
RsaI	GTAC	3 cut(s)	116, 740, 779
RsaNI	GTAC	3 cut(s)	115, 739, 778
RseI	CAYNNNNRTG	1 cut(s)	308
SaqAI	TTAA	1 cut(s)	821
SatI	GCNGC	3 cut(s)	533, 698, 798
Sau3AI	GATC	2 cut(s)	360, 755
Sau96I	GGNCC	1 cut(s)	221
SchI	GAGTC	2 cut(s)	61, 501
SduI	GDGCHC	3 cut(s)	414, 499, 748
SfaNI	GCATC	3 cut(s)	483, 684, 828
SinI	GGWCC	1 cut(s)	221
SmiMI	CAYNNNNRTG	1 cut(s)	308
SmlI	CTYRAG	1 cut(s)	380
SmoI	CTYRAG	1 cut(s)	380
Sse9I	AATT	3 cut(s)	75, 245, 604
SsiI	CCGC	6 cut(s)	178, 376, 438, 654, 724, 798
SspMI	CTAG	2 cut(s)	753, 890
StyI	CCWWGG	3 cut(s)	502, 626, 676
TaaI	ACNGT	4 cut(s)	390, 743, 826, 896
TaiI	ACGT	1 cut(s)	783
TaqI	TCGA	1 cut(s)	846
TasI	AATT	3 cut(s)	75, 245, 604
TatI	WGTACW	1 cut(s)	114
TauI	GCSGC	1 cut(s)	800
Tru1I	TTAA	1 cut(s)	821
Tru9I	TTAA	1 cut(s)	821
TscAI	CASTG	2 cut(s)	56, 310
TseI	GCWGC	2 cut(s)	532, 697
TspDTI	ATGAA	5 cut(s)	91, 300, 359, 388, 580
TspGWI	ACGGA	2 cut(s)	168, 864
TspRI	CASTG	2 cut(s)	56, 310
VpaK11BI	GGWCC	1 cut(s)	221
XmiI	GTMKAC	1 cut(s)	633
XmnI	GAANNNNTTC	1 cut(s)	212
XspI	CTAG	2 cut(s)	753, 890

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.