Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0006450

Physical Location & Seq

Genomic Coordinates Reverse (-)

51604064 .. 51606823

Gene Structure 2760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00257210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGCTGATCTAGAAGGAGGAGGGCCGCCAAAAGCCAGAAGCAACGGTTACAACAACCCAAACCAGTACTATGTCGCAACTTCCGAGTCTTCGTGGACATCGTGGTTGGTTCCTATGATTGTAGTTGCCAATGTTGCTGTCTTTATTGTGACCATGTTCGTCAACAACTGTCCGAAGAACAATTTGGGTTTGGAAGGCTCGTGTGTGGCTAAGTTTCTTGGGAGGCTTTCCTTTCAGCCTTTGAAAGAGAACCCTCTTTTTGGTCCATCTGCTGCAACATTGGAAAAAATGGGAGGCCTGCAGTGGTACAAGGTTGTACATGGGAATGAAGCATGGAGGCTTATCGCTTGTATCTGGTTGCATGCCGGTGTCATACATGTGCTTGCAAACATGCTGAGCTTGGTCTTTATTGGCATCCGTCTGGAACAGCAATTCGGCTTTGTTCGCGTGGGGATAATCTACCTGTTGTCAGGACTTGGTGGGAGTATATTATCAGCCCTTTTCCTTCAGAGTCATAACAATATTTCTGTTGGTGCTTCTGGCGCTTTGTTTGGACTTCTTGGAGCAATGTTATCAGAGCTTCTCACCAACTGGAGTATCTATAGCAACAAGGCTGCAGCTCTGTTCACTCTTGTAATCATCATTGCCATCAACTTAGCAGTTGGAATTCTTCCTCATGTTGATAACTTTGCCCACATTGGAGGATTTATTTCTGGGTTTCTCCTCGGTTTTGTACTGCTATTTCGTCCCCAGTTTGGATGGTTGGAGAGTCGGAATCTTCCAGCTGGTGCTCGTGTCAAATCTAAGTACAAGGCTTACCAATTGGTTTTTTGTGTGCTTGCCCTTGCCTCGGTGATTGTTTGGTATACTGTGGGATTGGTGATGCTGTTCAAAGGAGAGGACGGAAACGAGCACTGCAGCTGGTGCCATTACCTAAGCTGTGTGCCAACCAAACATTGGAAGTGTAACAACACAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005911 GO:0006508 GO:0006807 GO:0006928 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008283 GO:0009506 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0016787 GO:0017171 GO:0019222 GO:0019538 GO:0023051 GO:0030054 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0055044 GO:0060255 GO:0061136 GO:0065007 GO:0070011 GO:0070201 GO:0071704 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:0140096 GO:1901184 GO:1901564 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

326

Amino Acids

35.62

Weight (kDa)

8.99

Isoelectric Point (pI)

30.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	109 - 247	1.2e-41	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12750 AT1G12750 AT1G12750 AT1G12750 AT1G12750 AT1G12750 AT1G12750 AT1G63120 AT4G23070
fragaria_vesca	FvH4_5g01700 FvH4_5g01700 FvH4_5g01700
malus_domestica	MD04G1065500.v1.1
prunus_persica	Prupe.5G092700_v2.0.a1
pyrus_communis	pycom04g05900 pycom06g07360
rosa_chinensis	RchiOBHm_Chr7g0199021
rosa_laevigata	RLG00000003823
rosa_multiflora	Rmu_sc0006266.1_g000029
rosa_roxburghii	Rroxscaffold_3G00257210
rosa_rugosa	Rorug07G0052100
rosa_samantha	Rh7AG175200 Rh7BG178600 Rh7CG184400 Rh7DG178000
rosa_wichuraiana	Rw7G015370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	924
AccB7I	CCANNNNNTGG	1 cut(s)	957
AccI	GTMKAC	1 cut(s)	866
AccII	CGCG	1 cut(s)	447
AciI	CCGC	1 cut(s)	26
AcsI	RAATTY	1 cut(s)	666
AcuI	CTGAAG	1 cut(s)	491
AfaI	GTAC	5 cut(s)	68, 308, 318, 735, 809
AfiI	CCNNNNNNNGG	4 cut(s)	260, 755, 850, 957
AflIII	ACRYGT	1 cut(s)	376
AgsI	TTSAA	2 cut(s)	244, 892
AjuI	GAANNNNNNNTTGG	2 cut(s)	167, 199
AluBI	AGCT	7 cut(s)	399, 580, 620, 785, 921, 939, 978
AluI	AGCT	7 cut(s)	399, 580, 620, 785, 921, 939, 978
Alw21I	GWGCWC	2 cut(s)	793, 915
AoxI	GGCC	2 cut(s)	23, 295
ApeKI	GCWGC	4 cut(s)	272, 614, 617, 918
ApoI	RAATTY	1 cut(s)	666
AspLEI	GCGC	1 cut(s)	545
AspS9I	GGNCC	2 cut(s)	23, 263
AsuHPI	GGTGA	3 cut(s)	577, 865, 892
AvaII	GGWCC	1 cut(s)	263
BaeI	ACNNNNGTAYC	2 cut(s)	580, 613
BanI	GGYRCC	1 cut(s)	924
BauI	CACGAG	2 cut(s)	199, 792
BbsI	GAAGAC	1 cut(s)	81
Bbv12I	GWGCWC	2 cut(s)	793, 915
BbvI	GCAGC	4 cut(s)	259, 601, 629, 930
BccI	CCATC	3 cut(s)	274, 656, 753
BfaI	CTAG	1 cut(s)	11
BfmI	CTRYAG	4 cut(s)	299, 601, 615, 916
BfoI	RGCGCY	1 cut(s)	546
BisI	GCNGC	5 cut(s)	26, 273, 615, 618, 919
BlpI	GCTNAGC	1 cut(s)	395
BlsI	GCNGC	5 cut(s)	27, 274, 616, 619, 920
BmcAI	AGTACT	1 cut(s)	68
Bme18I	GGWCC	1 cut(s)	263
BmgT120I	GGNCC	2 cut(s)	23, 263
BmiI	GGNNCC	2 cut(s)	111, 926
BmrI	ACTGGG	1 cut(s)	745
BmsI	GCATC	2 cut(s)	423, 873
BmuI	ACTGGG	1 cut(s)	745
BpiI	GAAGAC	1 cut(s)	81
BpmI	CTGGAG	1 cut(s)	613
Bpu10I	CCTNAGC	1 cut(s)	935
Bpu1102I	GCTNAGC	1 cut(s)	395
BsaJI	CCNNGG	2 cut(s)	724, 849
Bsc4I	CCNNNNNNNGG	4 cut(s)	260, 755, 850, 957
Bse118I	RCCGGY	1 cut(s)	365
Bse1I	ACTGG	3 cut(s)	64, 596, 751
Bse3DI	GCAATG	2 cut(s)	573, 642
BseDI	CCNNGG	2 cut(s)	724, 849
BseGI	GGATG	2 cut(s)	414, 764
BseLI	CCNNNNNNNGG	4 cut(s)	260, 755, 850, 957
BseMI	GCAATG	2 cut(s)	573, 642
BseMII	CTCAG	1 cut(s)	386
BseNI	ACTGG	3 cut(s)	64, 596, 751
BseRI	GAGGAG	2 cut(s)	33, 713
BseXI	GCAGC	4 cut(s)	259, 601, 629, 930
Bsh1236I	CGCG	1 cut(s)	447
BshFI	GGCC	2 cut(s)	25, 297
BshNI	GGYRCC	1 cut(s)	924
BsiHKAI	GWGCWC	2 cut(s)	793, 915
BsiSI	CCGG	1 cut(s)	366
BslFI	GGGAC	1 cut(s)	732
BslI	CCNNNNNNNGG	4 cut(s)	260, 755, 850, 957
BsmFI	GGGAC	1 cut(s)	732
BsnI	GGCC	2 cut(s)	25, 297
Bsp1286I	GDGCHC	2 cut(s)	793, 915
Bsp1407I	TGTACA	1 cut(s)	316
Bsp143I	GATC	1 cut(s)	7
Bsp1720I	GCTNAGC	1 cut(s)	395
BspACI	CCGC	1 cut(s)	26
BspANI	GGCC	2 cut(s)	25, 297
BspCNI	CTCAG	1 cut(s)	387
BspFNI	CGCG	1 cut(s)	447
BspLI	GGNNCC	2 cut(s)	111, 926
BspMAI	CTGCAG	3 cut(s)	303, 619, 920
BspT107I	GGYRCC	1 cut(s)	924
BsrDI	GCAATG	2 cut(s)	573, 642
BsrFI	RCCGGY	1 cut(s)	365
BsrGI	TGTACA	1 cut(s)	316
BsrI	ACTGG	3 cut(s)	64, 596, 751
BssAI	RCCGGY	1 cut(s)	365
BssECI	CCNNGG	2 cut(s)	724, 849
BssMI	GATC	1 cut(s)	7
BssNAI	GTATAC	1 cut(s)	867
BssSI	CACGAG	2 cut(s)	199, 792
Bst1107I	GTATAC	1 cut(s)	867
Bst2BI	CACGAG	2 cut(s)	199, 792
Bst4CI	ACNGT	3 cut(s)	47, 170, 871
BstAPI	GCANNNNNTGC	1 cut(s)	924
BstAUI	TGTACA	1 cut(s)	316
BstC8I	GCNNGC	4 cut(s)	299, 363, 384, 840
BstDEI	CTNAG	5 cut(s)	210, 395, 655, 804, 935
BstF5I	GGATG	2 cut(s)	414, 764
BstFNI	CGCG	1 cut(s)	447
BstH2I	RGCGCY	1 cut(s)	546
BstHHI	GCGC	1 cut(s)	545
BstKTI	GATC	1 cut(s)	10
BstMBI	GATC	1 cut(s)	7
BstMWI	GCNNNNNNNGC	4 cut(s)	134, 444, 542, 924
BstNSI	RCATGY	3 cut(s)	365, 380, 394
BstSFI	CTRYAG	4 cut(s)	299, 601, 615, 916
BstUI	CGCG	1 cut(s)	447
BstV1I	GCAGC	4 cut(s)	259, 601, 629, 930
BstV2I	GAAGAC	1 cut(s)	81
BstZ17I	GTATAC	1 cut(s)	867
BsuRI	GGCC	2 cut(s)	25, 297
BtsCI	GGATG	2 cut(s)	414, 764
BtsI	GCAGTG	2 cut(s)	308, 913
BtsIMutI	CAGTG	2 cut(s)	308, 913
Cac8I	GCNNGC	4 cut(s)	299, 363, 384, 840
CfoI	GCGC	1 cut(s)	545
Cfr10I	RCCGGY	1 cut(s)	365
Cfr13I	GGNCC	2 cut(s)	23, 263
Csp6I	GTAC	5 cut(s)	67, 307, 317, 734, 808
CviAII	CATG	7 cut(s)	154, 320, 333, 362, 377, 391, 677
CviQI	GTAC	5 cut(s)	67, 307, 317, 734, 808
DdeI	CTNAG	5 cut(s)	210, 395, 655, 804, 935
DpnI	GATC	1 cut(s)	9
DpnII	GATC	1 cut(s)	7
Eco147I	AGGCCT	1 cut(s)	297
Eco47I	GGWCC	1 cut(s)	263
Eco57I	CTGAAG	1 cut(s)	491
EcoRI	GAATTC	1 cut(s)	666
FaeI	CATG	7 cut(s)	157, 323, 336, 365, 380, 394, 680
FaqI	GGGAC	1 cut(s)	732
FatI	CATG	7 cut(s)	153, 319, 332, 361, 376, 390, 676
FblI	GTMKAC	1 cut(s)	866
Fnu4HI	GCNGC	5 cut(s)	26, 273, 615, 618, 919
FokI	GGATG	2 cut(s)	401, 771
Fsp4HI	GCNGC	5 cut(s)	26, 273, 615, 618, 919
FspBI	CTAG	1 cut(s)	11
GlaI	GCGC	1 cut(s)	544
GluI	GCNGC	5 cut(s)	26, 273, 615, 618, 919
GsuI	CTGGAG	1 cut(s)	613
HaeII	RGCGCY	1 cut(s)	546
HaeIII	GGCC	2 cut(s)	25, 297
HapII	CCGG	1 cut(s)	366
HhaI	GCGC	1 cut(s)	545
Hin1II	CATG	7 cut(s)	157, 323, 336, 365, 380, 394, 680
Hin6I	GCGC	1 cut(s)	543
HinP1I	GCGC	1 cut(s)	543
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HinfI	GANTC	4 cut(s)	86, 511, 769, 775
HpaII	CCGG	1 cut(s)	366
HphI	GGTGA	3 cut(s)	577, 865, 892
Hpy166II	GTNNAC	4 cut(s)	96, 163, 627, 867
Hpy188I	TCNGA	5 cut(s)	85, 174, 510, 577, 774
Hpy188III	TCNNGA	3 cut(s)	11, 422, 471
Hpy8I	GTNNAC	4 cut(s)	96, 163, 627, 867
HpyAV	CCTTC	3 cut(s)	8, 188, 515
HpyCH4III	ACNGT	3 cut(s)	47, 170, 871
HpyCH4V	TGCA	6 cut(s)	275, 301, 361, 386, 617, 918
HpyF10VI	GCNNNNNNNGC	4 cut(s)	134, 444, 542, 924
HpyF3I	CTNAG	5 cut(s)	210, 395, 655, 804, 935
Hsp92II	CATG	7 cut(s)	157, 323, 336, 365, 380, 394, 680
HspAI	GCGC	1 cut(s)	543
Kzo9I	GATC	1 cut(s)	7
LmnI	GCTCC	1 cut(s)	563
Lsp1109I	GCAGC	4 cut(s)	259, 601, 629, 930
LweI	GCATC	2 cut(s)	423, 873
MaeI	CTAG	1 cut(s)	11
MaeIII	GTNAC	3 cut(s)	47, 148, 965
MalI	GATC	1 cut(s)	9
MboI	GATC	1 cut(s)	7
MboII	GAAGA	4 cut(s)	81, 187, 662, 770
MfeI	CAATTG	1 cut(s)	821
MhlI	GDGCHC	2 cut(s)	793, 915
MluCI	AATT	4 cut(s)	181, 431, 666, 821
MlyI	GAGTC	3 cut(s)	95, 520, 778
MmeI	TCCRAC	3 cut(s)	643, 744, 752
MslI	CAYNNNNRTG	3 cut(s)	324, 366, 377
MspA1I	CMGCKG	2 cut(s)	785, 921
MspI	CCGG	1 cut(s)	366
MunI	CAATTG	1 cut(s)	821
MvnI	CGCG	1 cut(s)	447
MwoI	GCNNNNNNNGC	4 cut(s)	134, 444, 542, 924
NdeII	GATC	1 cut(s)	7
NlaIII	CATG	7 cut(s)	157, 323, 336, 365, 380, 394, 680
NlaIV	GGNNCC	2 cut(s)	111, 926
NmuCI	GTSAC	1 cut(s)	148
NspI	RCATGY	3 cut(s)	365, 380, 394
PaeI	GCATGC	1 cut(s)	365
PceI	AGGCCT	1 cut(s)	297
PciI	ACATGT	1 cut(s)	376
PcsI	WCGNNNNNNNCGW	2 cut(s)	81, 98
PfeI	GAWTC	1 cut(s)	775
PflMI	CCANNNNNTGG	1 cut(s)	957
PkrI	GCNGC	5 cut(s)	27, 274, 616, 619, 920
PleI	GAGTC	3 cut(s)	94, 519, 777
PpsI	GAGTC	3 cut(s)	94, 519, 777
PscI	ACATGT	1 cut(s)	376
PspN4I	GGNNCC	2 cut(s)	111, 926
PspPI	GGNCC	2 cut(s)	23, 263
PstI	CTGCAG	3 cut(s)	303, 619, 920
PvuII	CAGCTG	2 cut(s)	785, 921
RsaI	GTAC	5 cut(s)	68, 308, 318, 735, 809
RsaNI	GTAC	5 cut(s)	67, 307, 317, 734, 808
RseI	CAYNNNNRTG	3 cut(s)	324, 366, 377
SatI	GCNGC	5 cut(s)	26, 273, 615, 618, 919
Sau3AI	GATC	1 cut(s)	7
Sau96I	GGNCC	2 cut(s)	23, 263
ScaI	AGTACT	1 cut(s)	68
SchI	GAGTC	3 cut(s)	95, 520, 778
SduI	GDGCHC	2 cut(s)	793, 915
SfaNI	GCATC	2 cut(s)	423, 873
SfcI	CTRYAG	4 cut(s)	299, 601, 615, 916
SinI	GGWCC	1 cut(s)	263
SmiMI	CAYNNNNRTG	3 cut(s)	324, 366, 377
SphI	GCATGC	1 cut(s)	365
Sse9I	AATT	4 cut(s)	181, 431, 666, 821
SseBI	AGGCCT	1 cut(s)	297
SsiI	CCGC	1 cut(s)	26
SspI	AATATT	1 cut(s)	523
SspMI	CTAG	1 cut(s)	11
StuI	AGGCCT	1 cut(s)	297
TaaI	ACNGT	3 cut(s)	47, 170, 871
TasI	AATT	4 cut(s)	181, 431, 666, 821
TatI	WGTACW	4 cut(s)	66, 316, 733, 807
TauI	GCSGC	1 cut(s)	28
TfiI	GAWTC	1 cut(s)	775
TscAI	CASTG	2 cut(s)	308, 920
TseFI	GTSAC	1 cut(s)	148
TseI	GCWGC	4 cut(s)	272, 614, 617, 918
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	1 cut(s)	342
TspGWI	ACGGA	2 cut(s)	407, 918
TspRI	CASTG	2 cut(s)	308, 920
Van91I	CCANNNNNTGG	1 cut(s)	957
VpaK11BI	GGWCC	1 cut(s)	263
XapI	RAATTY	1 cut(s)	666
XbaI	TCTAGA	1 cut(s)	10
XceI	RCATGY	3 cut(s)	365, 380, 394
XcmI	CCANNNNNNNNNTGG	1 cut(s)	954
XmiI	GTMKAC	1 cut(s)	866
XspI	CTAG	1 cut(s)	11
ZrmI	AGTACT	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.