Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0006450

Physical Location & Seq

Genomic Coordinates Forward (+)

16093339 .. 16097894

Gene Structure 4556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG184400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGTTTTGCTTTTGCAGATTGGAAAAAATGGGAGGCCTGCAATGGTACAAGGTTGTACATGGGAATGAAGCATGGAGGCTTATCGCTTGTATCTGGTTGCATGCCGGTGTCATACATGTGCTTGCAAACATGCTGAGCTTGGTCTTTATTGGCATCCGTCTGGAACAGCAATTCGGCTTTGTTCGCGTGGGGATAATCTACCTGTTGTCAGGACTTGGTGGGAGTATATTATCAGCCCTTTTCCTTCAGAGTCATAACAATATTTCTGTTGGTGCTTCTGGCGCTTTGTTTGGACTTCTTGGAGCTATGTTATCAGAGCTTCTCACCAACTGGAGTATCTATAGCAACAAGGCTGCAGCTCTGTTCACTCTTGTAATCATCATTGCCATCAACTTAGCAGTTGGAATTCTTCCTCATGTTGACAACTTTGCCCACATCGGAGGATTTATTTCTGGGTTTCTCCTCGGTTTTGTACTGCTATTTCGTCCCCAGTTTGGATGGTTGGAGAGTCGGAATCTTCCAGCTGGTGCTCGTGTAAAATCTAAGTACAAGGCTTACCAATTGGTTTTTTGTGTGCTTGCCCTTGCCTCGGTGATTGTTTGGTATACTGTGGGATTGGTGATGCTGTTCAAAGGAGAGGACGGAAACGAGCACTGCAGCTGGTGCCATTACCTAAGCTGTGTGCCAACCAAACATTGGAAGTGTAACAACACAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005911 GO:0006508 GO:0006807 GO:0006928 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008283 GO:0009506 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0016787 GO:0017171 GO:0019222 GO:0019538 GO:0023051 GO:0030054 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0055044 GO:0060255 GO:0061136 GO:0065007 GO:0070011 GO:0070201 GO:0071704 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:0140096 GO:1901184 GO:1901564 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

239

Amino Acids

26.43

Weight (kDa)

9.07

Isoelectric Point (pI)

31.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	22 - 160	5.3e-42	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12750 AT1G12750 AT1G12750 AT1G12750 AT1G12750 AT1G12750 AT1G12750 AT1G63120 AT4G23070
fragaria_vesca	FvH4_5g01700 FvH4_5g01700 FvH4_5g01700
malus_domestica	MD04G1065500.v1.1
prunus_persica	Prupe.5G092700_v2.0.a1
pyrus_communis	pycom04g05900 pycom06g07360
rosa_chinensis	RchiOBHm_Chr7g0199021
rosa_laevigata	RLG00000003823
rosa_multiflora	Rmu_sc0006266.1_g000029
rosa_roxburghii	Rroxscaffold_3G00257210
rosa_rugosa	Rorug07G0052100
rosa_samantha	Rh7AG175200 Rh7BG178600 Rh7CG184400 Rh7DG178000
rosa_wichuraiana	Rw7G015370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	663
AccB7I	CCANNNNNTGG	1 cut(s)	696
AccI	GTMKAC	1 cut(s)	605
AccII	CGCG	1 cut(s)	186
AcsI	RAATTY	1 cut(s)	405
AcuI	CTGAAG	1 cut(s)	230
AfaI	GTAC	4 cut(s)	47, 57, 474, 548
AfiI	CCNNNNNNNGG	3 cut(s)	494, 589, 696
AflIII	ACRYGT	1 cut(s)	115
AgsI	TTSAA	1 cut(s)	631
AluBI	AGCT	8 cut(s)	138, 305, 319, 359, 524, 660, 678, 717
AluI	AGCT	8 cut(s)	138, 305, 319, 359, 524, 660, 678, 717
Alw21I	GWGCWC	2 cut(s)	532, 654
AoxI	GGCC	1 cut(s)	34
ApeKI	GCWGC	3 cut(s)	353, 356, 657
ApoI	RAATTY	1 cut(s)	405
AspLEI	GCGC	1 cut(s)	284
AsuHPI	GGTGA	3 cut(s)	316, 604, 631
BaeI	ACNNNNGTAYC	2 cut(s)	319, 352
BanI	GGYRCC	1 cut(s)	663
BauI	CACGAG	1 cut(s)	531
Bbv12I	GWGCWC	2 cut(s)	532, 654
BbvI	GCAGC	3 cut(s)	340, 368, 669
BccI	CCATC	2 cut(s)	395, 492
BfmI	CTRYAG	3 cut(s)	340, 354, 655
BfoI	RGCGCY	1 cut(s)	285
BisI	GCNGC	3 cut(s)	354, 357, 658
BlpI	GCTNAGC	1 cut(s)	134
BlsI	GCNGC	3 cut(s)	355, 358, 659
BmiI	GGNNCC	1 cut(s)	665
BmrI	ACTGGG	1 cut(s)	484
BmsI	GCATC	2 cut(s)	162, 612
BmuI	ACTGGG	1 cut(s)	484
BpmI	CTGGAG	1 cut(s)	352
Bpu10I	CCTNAGC	1 cut(s)	674
Bpu1102I	GCTNAGC	1 cut(s)	134
BsaJI	CCNNGG	2 cut(s)	463, 588
Bsc4I	CCNNNNNNNGG	3 cut(s)	494, 589, 696
Bse118I	RCCGGY	1 cut(s)	104
Bse1I	ACTGG	2 cut(s)	335, 490
Bse3DI	GCAATG	2 cut(s)	47, 381
BseDI	CCNNGG	2 cut(s)	463, 588
BseGI	GGATG	2 cut(s)	153, 503
BseLI	CCNNNNNNNGG	3 cut(s)	494, 589, 696
BseMI	GCAATG	2 cut(s)	47, 381
BseMII	CTCAG	1 cut(s)	125
BseNI	ACTGG	2 cut(s)	335, 490
BseRI	GAGGAG	1 cut(s)	452
BseXI	GCAGC	3 cut(s)	340, 368, 669
Bsh1236I	CGCG	1 cut(s)	186
BshFI	GGCC	1 cut(s)	36
BshNI	GGYRCC	1 cut(s)	663
BsiHKAI	GWGCWC	2 cut(s)	532, 654
BsiSI	CCGG	1 cut(s)	105
BslFI	GGGAC	1 cut(s)	471
BslI	CCNNNNNNNGG	3 cut(s)	494, 589, 696
BsmFI	GGGAC	1 cut(s)	471
BsnI	GGCC	1 cut(s)	36
Bsp1286I	GDGCHC	2 cut(s)	532, 654
Bsp1407I	TGTACA	1 cut(s)	55
Bsp1720I	GCTNAGC	1 cut(s)	134
BspANI	GGCC	1 cut(s)	36
BspCNI	CTCAG	1 cut(s)	126
BspFNI	CGCG	1 cut(s)	186
BspLI	GGNNCC	1 cut(s)	665
BspMAI	CTGCAG	2 cut(s)	358, 659
BspT107I	GGYRCC	1 cut(s)	663
BsrDI	GCAATG	2 cut(s)	47, 381
BsrFI	RCCGGY	1 cut(s)	104
BsrGI	TGTACA	1 cut(s)	55
BsrI	ACTGG	2 cut(s)	335, 490
BssAI	RCCGGY	1 cut(s)	104
BssECI	CCNNGG	2 cut(s)	463, 588
BssNAI	GTATAC	1 cut(s)	606
BssSI	CACGAG	1 cut(s)	531
Bst1107I	GTATAC	1 cut(s)	606
Bst2BI	CACGAG	1 cut(s)	531
Bst4CI	ACNGT	1 cut(s)	610
BstAPI	GCANNNNNTGC	1 cut(s)	663
BstAUI	TGTACA	1 cut(s)	55
BstC8I	GCNNGC	4 cut(s)	38, 102, 123, 579
BstDEI	CTNAG	4 cut(s)	134, 394, 543, 674
BstF5I	GGATG	2 cut(s)	153, 503
BstFNI	CGCG	1 cut(s)	186
BstH2I	RGCGCY	1 cut(s)	285
BstHHI	GCGC	1 cut(s)	284
BstMWI	GCNNNNNNNGC	3 cut(s)	183, 281, 663
BstNSI	RCATGY	3 cut(s)	104, 119, 133
BstSFI	CTRYAG	3 cut(s)	340, 354, 655
BstUI	CGCG	1 cut(s)	186
BstV1I	GCAGC	3 cut(s)	340, 368, 669
BstZ17I	GTATAC	1 cut(s)	606
BsuRI	GGCC	1 cut(s)	36
BtsCI	GGATG	2 cut(s)	153, 503
BtsI	GCAGTG	1 cut(s)	652
BtsIMutI	CAGTG	1 cut(s)	652
Cac8I	GCNNGC	4 cut(s)	38, 102, 123, 579
CfoI	GCGC	1 cut(s)	284
Cfr10I	RCCGGY	1 cut(s)	104
Csp6I	GTAC	4 cut(s)	46, 56, 473, 547
CviAII	CATG	6 cut(s)	59, 72, 101, 116, 130, 416
CviQI	GTAC	4 cut(s)	46, 56, 473, 547
DdeI	CTNAG	4 cut(s)	134, 394, 543, 674
Eco147I	AGGCCT	1 cut(s)	36
Eco57I	CTGAAG	1 cut(s)	230
EcoRI	GAATTC	1 cut(s)	405
FaeI	CATG	6 cut(s)	62, 75, 104, 119, 133, 419
FaqI	GGGAC	1 cut(s)	471
FatI	CATG	6 cut(s)	58, 71, 100, 115, 129, 415
FblI	GTMKAC	1 cut(s)	605
Fnu4HI	GCNGC	3 cut(s)	354, 357, 658
FokI	GGATG	2 cut(s)	140, 510
Fsp4HI	GCNGC	3 cut(s)	354, 357, 658
GlaI	GCGC	1 cut(s)	283
GluI	GCNGC	3 cut(s)	354, 357, 658
GsuI	CTGGAG	1 cut(s)	352
HaeII	RGCGCY	1 cut(s)	285
HaeIII	GGCC	1 cut(s)	36
HapII	CCGG	1 cut(s)	105
HhaI	GCGC	1 cut(s)	284
Hin1II	CATG	6 cut(s)	62, 75, 104, 119, 133, 419
Hin6I	GCGC	1 cut(s)	282
HinP1I	GCGC	1 cut(s)	282
HincII	GTYRAC	1 cut(s)	421
HindII	GTYRAC	1 cut(s)	421
HinfI	GANTC	3 cut(s)	250, 508, 514
HpaII	CCGG	1 cut(s)	105
HphI	GGTGA	3 cut(s)	316, 604, 631
Hpy166II	GTNNAC	3 cut(s)	366, 421, 606
Hpy188I	TCNGA	4 cut(s)	249, 316, 440, 513
Hpy188III	TCNNGA	2 cut(s)	161, 210
Hpy8I	GTNNAC	3 cut(s)	366, 421, 606
HpyAV	CCTTC	1 cut(s)	254
HpyCH4III	ACNGT	1 cut(s)	610
HpyCH4V	TGCA	6 cut(s)	15, 40, 100, 125, 356, 657
HpyF10VI	GCNNNNNNNGC	3 cut(s)	183, 281, 663
HpyF3I	CTNAG	4 cut(s)	134, 394, 543, 674
Hsp92II	CATG	6 cut(s)	62, 75, 104, 119, 133, 419
HspAI	GCGC	1 cut(s)	282
LmnI	GCTCC	1 cut(s)	302
Lsp1109I	GCAGC	3 cut(s)	340, 368, 669
LweI	GCATC	2 cut(s)	162, 612
MaeIII	GTNAC	1 cut(s)	704
MboII	GAAGA	2 cut(s)	401, 509
MfeI	CAATTG	1 cut(s)	560
MhlI	GDGCHC	2 cut(s)	532, 654
MluCI	AATT	3 cut(s)	170, 405, 560
MlyI	GAGTC	2 cut(s)	259, 517
MmeI	TCCRAC	3 cut(s)	382, 483, 491
MnlI	CCTC	7 cut(s)	26, 69, 423, 434, 473, 598, 631
MslI	CAYNNNNRTG	3 cut(s)	63, 105, 116
MspA1I	CMGCKG	2 cut(s)	524, 660
MspI	CCGG	1 cut(s)	105
MunI	CAATTG	1 cut(s)	560
MvnI	CGCG	1 cut(s)	186
MwoI	GCNNNNNNNGC	3 cut(s)	183, 281, 663
NlaIII	CATG	6 cut(s)	62, 75, 104, 119, 133, 419
NlaIV	GGNNCC	1 cut(s)	665
NspI	RCATGY	3 cut(s)	104, 119, 133
PaeI	GCATGC	1 cut(s)	104
PceI	AGGCCT	1 cut(s)	36
PciI	ACATGT	1 cut(s)	115
PfeI	GAWTC	1 cut(s)	514
PflMI	CCANNNNNTGG	1 cut(s)	696
PkrI	GCNGC	3 cut(s)	355, 358, 659
PleI	GAGTC	2 cut(s)	258, 516
PpsI	GAGTC	2 cut(s)	258, 516
PscI	ACATGT	1 cut(s)	115
PspN4I	GGNNCC	1 cut(s)	665
PstI	CTGCAG	2 cut(s)	358, 659
PvuII	CAGCTG	2 cut(s)	524, 660
RsaI	GTAC	4 cut(s)	47, 57, 474, 548
RsaNI	GTAC	4 cut(s)	46, 56, 473, 547
RseI	CAYNNNNRTG	3 cut(s)	63, 105, 116
SatI	GCNGC	3 cut(s)	354, 357, 658
SchI	GAGTC	2 cut(s)	259, 517
SduI	GDGCHC	2 cut(s)	532, 654
SfaNI	GCATC	2 cut(s)	162, 612
SfcI	CTRYAG	3 cut(s)	340, 354, 655
SmiMI	CAYNNNNRTG	3 cut(s)	63, 105, 116
SphI	GCATGC	1 cut(s)	104
Sse9I	AATT	3 cut(s)	170, 405, 560
SseBI	AGGCCT	1 cut(s)	36
SspI	AATATT	1 cut(s)	262
StuI	AGGCCT	1 cut(s)	36
TaaI	ACNGT	1 cut(s)	610
TasI	AATT	3 cut(s)	170, 405, 560
TatI	WGTACW	3 cut(s)	55, 472, 546
TfiI	GAWTC	1 cut(s)	514
TscAI	CASTG	1 cut(s)	659
TseI	GCWGC	3 cut(s)	353, 356, 657
TspDTI	ATGAA	1 cut(s)	81
TspGWI	ACGGA	2 cut(s)	146, 657
TspRI	CASTG	1 cut(s)	659
Van91I	CCANNNNNTGG	1 cut(s)	696
XapI	RAATTY	1 cut(s)	405
XceI	RCATGY	3 cut(s)	104, 119, 133
XcmI	CCANNNNNNNNNTGG	1 cut(s)	693
XmiI	GTMKAC	1 cut(s)	605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.