Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0006450

Physical Location & Seq

Genomic Coordinates Reverse (-)

1087388 .. 1091216

Gene Structure 3829 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g01700.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGCTGATCTAGAAGGAGGAGGGCCGCCAAAAGCCAGAAGCAACGGTTACAACAACCACAACAACCACCCGAACCAGTACTATGTCGGAACTTCCGAGTCTTCGTGGACGTCGTGGTTGGTTCCTATGTTTGTAGTTGCCAATGTTGTTGTCTTTATTGTAACCATGTTTGTGAACAATTGTCCCAAGAACAACTTGGGTTTCGAAGGCAAGTGTGTGGCCAGGTTTCTCGGCAGGCTTTCGTTTGAGCCTTTGAAAGAGAACCCGCTGTTTGGTCCTTCTTCTGATACATTGGAAAAAATGGGAGGCCTGCAGTGGTACAAGGTTGTACATGGGAATGAAGCATGGAGGCTTCTCACTTGTATTTGGTTGCATGCCGGTGTCATTCATGTGCTTGCAAACATGCTGAGCTTGGTCTTTATTGGCATCCGTCTGGAACAGCAATTCGGCTTTGTTCGCGTGGGGATAATCTACCTGTTGTCGGGTCTTGGTGGGAGCATATTATCTGCCCTTTTTCTTCAGAATAATAACAATATTTCAGTTGGTGCTTCTGGCGCTTTATTTGGACTTCTTGGAGCTATGTTATCAGAGCTTCTCACAAACTGGAGTATCTATACTAACAAGGCTGCAGCTCTTTTCACTCTTGTAATCATCATTGCCATCAACTTAGCAGTTGGGATTCTTCCTCATGTTGACAACTTTGCTCACATTGGAGGATTTATGTCTGGTTTTCTCCTTGGTTTTGTACTGCTATTTCGTCCCCAGTTTGGATGGATGGAGAGTCGGAATCTACCAGCTGGTGCTCGTGTCAAATCTAAGTACAAGGCTTATCAAGTGGTTCTTTGTGTGCTTGCGCTTGCCTTGGTGATTGTTTGGTATACTGTGGGATTGGTGATGCTGTTCAGAGGAGAGAATGGAAACGAGCACTGCAGCTGGTGTCATTACCTGAGTTGTGTTCCAACCAAACATTGGAAGTGTAACAACACAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005911 GO:0006508 GO:0006807 GO:0006928 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008283 GO:0009506 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0016787 GO:0017171 GO:0019222 GO:0019538 GO:0023051 GO:0030054 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0055044 GO:0060255 GO:0061136 GO:0065007 GO:0070011 GO:0070201 GO:0071704 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:0140096 GO:1901184 GO:1901564 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

331

Amino Acids

36.42

Weight (kDa)

9.0

Isoelectric Point (pI)

26.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	113 - 251	6.3e-43	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12750 AT1G12750 AT1G12750 AT1G12750 AT1G12750 AT1G12750 AT1G12750 AT1G63120 AT4G23070
fragaria_vesca	FvH4_5g01700 FvH4_5g01700 FvH4_5g01700
malus_domestica	MD04G1065500.v1.1
prunus_persica	Prupe.5G092700_v2.0.a1
pyrus_communis	pycom04g05900 pycom06g07360
rosa_chinensis	RchiOBHm_Chr7g0199021
rosa_laevigata	RLG00000003823
rosa_multiflora	Rmu_sc0006266.1_g000029
rosa_roxburghii	Rroxscaffold_3G00257210
rosa_rugosa	Rorug07G0052100
rosa_samantha	Rh7AG175200 Rh7BG178600 Rh7CG184400 Rh7DG178000
rosa_wichuraiana	Rw7G015370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	113
AccB7I	CCANNNNNTGG	1 cut(s)	969
AccI	GTMKAC	1 cut(s)	878
AccII	CGCG	1 cut(s)	459
AciI	CCGC	2 cut(s)	26, 266
AcoI	YGGCCR	1 cut(s)	219
AcuI	CTGAAG	1 cut(s)	503
AcyI	GRCGYC	1 cut(s)	110
AfaI	GTAC	5 cut(s)	80, 320, 330, 747, 821
AfiI	CCNNNNNNNGG	4 cut(s)	272, 481, 767, 969
AgsI	TTSAA	1 cut(s)	256
AjnI	CCWGG	1 cut(s)	221
AluBI	AGCT	7 cut(s)	411, 578, 592, 632, 797, 933, 990
AluI	AGCT	7 cut(s)	411, 578, 592, 632, 797, 933, 990
Alw21I	GWGCWC	2 cut(s)	805, 927
AoxI	GGCC	3 cut(s)	23, 219, 307
ApeKI	GCWGC	3 cut(s)	626, 629, 930
AspLEI	GCGC	2 cut(s)	557, 856
AspS9I	GGNCC	2 cut(s)	23, 275
AsuHPI	GGTGA	2 cut(s)	877, 904
AsuII	TTCGAA	1 cut(s)	204
AvaII	GGWCC	1 cut(s)	275
BaeI	ACNNNNGTAYC	2 cut(s)	592, 625
BalI	TGGCCA	1 cut(s)	221
BauI	CACGAG	1 cut(s)	804
BbsI	GAAGAC	1 cut(s)	93
Bbv12I	GWGCWC	2 cut(s)	805, 927
BbvI	GCAGC	3 cut(s)	613, 641, 942
BccI	CCATC	3 cut(s)	668, 765, 769
BciT130I	CCWGG	1 cut(s)	223
BfaI	CTAG	1 cut(s)	11
BfmI	CTRYAG	3 cut(s)	311, 627, 928
BfoI	RGCGCY	1 cut(s)	558
BisI	GCNGC	4 cut(s)	26, 627, 630, 931
BlpI	GCTNAGC	1 cut(s)	407
BlsI	GCNGC	4 cut(s)	27, 628, 631, 932
BmcAI	AGTACT	1 cut(s)	80
Bme1390I	CCNGG	1 cut(s)	223
Bme18I	GGWCC	1 cut(s)	275
BmgT120I	GGNCC	2 cut(s)	23, 275
BmiI	GGNNCC	1 cut(s)	123
BmrFI	CCNGG	1 cut(s)	223
BmrI	ACTGGG	1 cut(s)	757
BmsI	GCATC	2 cut(s)	435, 885
BmuI	ACTGGG	1 cut(s)	757
BpiI	GAAGAC	1 cut(s)	93
BpmI	CTGGAG	1 cut(s)	625
Bpu1102I	GCTNAGC	1 cut(s)	407
Bpu14I	TTCGAA	1 cut(s)	204
BsaHI	GRCGYC	1 cut(s)	110
BsaJI	CCNNGG	2 cut(s)	736, 861
Bsc4I	CCNNNNNNNGG	4 cut(s)	272, 481, 767, 969
Bse118I	RCCGGY	1 cut(s)	377
Bse1I	ACTGG	3 cut(s)	76, 608, 763
Bse3DI	GCAATG	1 cut(s)	654
BseBI	CCWGG	1 cut(s)	223
BseDI	CCNNGG	2 cut(s)	736, 861
BseGI	GGATG	3 cut(s)	426, 776, 780
BseLI	CCNNNNNNNGG	4 cut(s)	272, 481, 767, 969
BseMI	GCAATG	1 cut(s)	654
BseMII	CTCAG	2 cut(s)	398, 938
BseNI	ACTGG	3 cut(s)	76, 608, 763
BseRI	GAGGAG	2 cut(s)	33, 921
BseXI	GCAGC	3 cut(s)	613, 641, 942
Bsh1236I	CGCG	1 cut(s)	459
BshFI	GGCC	3 cut(s)	25, 221, 309
BsiHKAI	GWGCWC	2 cut(s)	805, 927
BsiSI	CCGG	1 cut(s)	378
BslFI	GGGAC	2 cut(s)	168, 744
BslI	CCNNNNNNNGG	4 cut(s)	272, 481, 767, 969
BsmFI	GGGAC	2 cut(s)	168, 744
BsnI	GGCC	3 cut(s)	25, 221, 309
Bsp119I	TTCGAA	1 cut(s)	204
Bsp1286I	GDGCHC	2 cut(s)	805, 927
Bsp1407I	TGTACA	1 cut(s)	328
Bsp143I	GATC	1 cut(s)	7
Bsp1720I	GCTNAGC	1 cut(s)	407
BspACI	CCGC	2 cut(s)	26, 266
BspANI	GGCC	3 cut(s)	25, 221, 309
BspCNI	CTCAG	2 cut(s)	399, 939
BspFNI	CGCG	1 cut(s)	459
BspLI	GGNNCC	1 cut(s)	123
BspMAI	CTGCAG	3 cut(s)	315, 631, 932
BspT104I	TTCGAA	1 cut(s)	204
BsrDI	GCAATG	1 cut(s)	654
BsrFI	RCCGGY	1 cut(s)	377
BsrGI	TGTACA	1 cut(s)	328
BsrI	ACTGG	3 cut(s)	76, 608, 763
BssAI	RCCGGY	1 cut(s)	377
BssECI	CCNNGG	2 cut(s)	736, 861
BssMI	GATC	1 cut(s)	7
BssNAI	GTATAC	1 cut(s)	879
BssNI	GRCGYC	1 cut(s)	110
BssSI	CACGAG	1 cut(s)	804
BssT1I	CCWWGG	2 cut(s)	736, 861
Bst1107I	GTATAC	1 cut(s)	879
Bst2BI	CACGAG	1 cut(s)	804
Bst2UI	CCWGG	1 cut(s)	223
Bst4CI	ACNGT	2 cut(s)	47, 883
BstACI	GRCGYC	1 cut(s)	110
BstAUI	TGTACA	1 cut(s)	328
BstBI	TTCGAA	1 cut(s)	204
BstC8I	GCNNGC	6 cut(s)	236, 311, 375, 396, 852, 858
BstDEI	CTNAG	4 cut(s)	407, 667, 816, 947
BstF5I	GGATG	3 cut(s)	426, 776, 780
BstFNI	CGCG	1 cut(s)	459
BstH2I	RGCGCY	1 cut(s)	558
BstHHI	GCGC	2 cut(s)	557, 856
BstKTI	GATC	1 cut(s)	10
BstMBI	GATC	1 cut(s)	7
BstMWI	GCNNNNNNNGC	2 cut(s)	456, 554
BstNI	CCWGG	1 cut(s)	223
BstNSI	RCATGY	2 cut(s)	377, 406
BstSCI	CCNGG	1 cut(s)	221
BstSFI	CTRYAG	3 cut(s)	311, 627, 928
BstUI	CGCG	1 cut(s)	459
BstV1I	GCAGC	3 cut(s)	613, 641, 942
BstV2I	GAAGAC	1 cut(s)	93
BstZ17I	GTATAC	1 cut(s)	879
BsuRI	GGCC	3 cut(s)	25, 221, 309
BtsCI	GGATG	3 cut(s)	426, 776, 780
BtsI	GCAGTG	2 cut(s)	320, 925
BtsIMutI	CAGTG	2 cut(s)	320, 925
Cac8I	GCNNGC	6 cut(s)	236, 311, 375, 396, 852, 858
CfoI	GCGC	2 cut(s)	557, 856
Cfr10I	RCCGGY	1 cut(s)	377
Cfr13I	GGNCC	2 cut(s)	23, 275
Csp6I	GTAC	5 cut(s)	79, 319, 329, 746, 820
CviAII	CATG	7 cut(s)	166, 332, 345, 374, 389, 403, 689
CviQI	GTAC	5 cut(s)	79, 319, 329, 746, 820
DdeI	CTNAG	4 cut(s)	407, 667, 816, 947
DpnI	GATC	1 cut(s)	9
DpnII	GATC	1 cut(s)	7
EaeI	YGGCCR	1 cut(s)	219
Eco130I	CCWWGG	2 cut(s)	736, 861
Eco147I	AGGCCT	1 cut(s)	309
Eco47I	GGWCC	1 cut(s)	275
Eco57I	CTGAAG	1 cut(s)	503
EcoRII	CCWGG	1 cut(s)	221
EcoT14I	CCWWGG	2 cut(s)	736, 861
ErhI	CCWWGG	2 cut(s)	736, 861
FaeI	CATG	7 cut(s)	169, 335, 348, 377, 392, 406, 692
FalI	AAGNNNNNCTT	4 cut(s)	179, 211, 825, 857
FaqI	GGGAC	2 cut(s)	168, 744
FatI	CATG	7 cut(s)	165, 331, 344, 373, 388, 402, 688
FauI	CCCGC	1 cut(s)	273
FblI	GTMKAC	1 cut(s)	878
Fnu4HI	GCNGC	4 cut(s)	26, 627, 630, 931
FokI	GGATG	3 cut(s)	413, 783, 787
Fsp4HI	GCNGC	4 cut(s)	26, 627, 630, 931
FspBI	CTAG	1 cut(s)	11
GlaI	GCGC	2 cut(s)	556, 855
GluI	GCNGC	4 cut(s)	26, 627, 630, 931
GsuI	CTGGAG	1 cut(s)	625
HaeII	RGCGCY	1 cut(s)	558
HaeIII	GGCC	3 cut(s)	25, 221, 309
HapII	CCGG	1 cut(s)	378
HhaI	GCGC	2 cut(s)	557, 856
Hin1I	GRCGYC	1 cut(s)	110
Hin1II	CATG	7 cut(s)	169, 335, 348, 377, 392, 406, 692
Hin6I	GCGC	2 cut(s)	555, 854
HinP1I	GCGC	2 cut(s)	555, 854
HincII	GTYRAC	1 cut(s)	694
HindII	GTYRAC	1 cut(s)	694
HinfI	GANTC	4 cut(s)	98, 679, 781, 787
HpaII	CCGG	1 cut(s)	378
HphI	GGTGA	2 cut(s)	877, 904
Hpy166II	GTNNAC	4 cut(s)	108, 175, 694, 879
Hpy188I	TCNGA	7 cut(s)	89, 97, 286, 522, 589, 786, 905
Hpy188III	TCNNGA	2 cut(s)	11, 434
Hpy8I	GTNNAC	4 cut(s)	108, 175, 694, 879
Hpy99I	CGWCG	1 cut(s)	115
HpyAV	CCTTC	3 cut(s)	8, 200, 288
HpyCH4III	ACNGT	2 cut(s)	47, 883
HpyCH4IV	ACGT	1 cut(s)	110
HpyCH4V	TGCA	5 cut(s)	313, 373, 398, 629, 930
HpyF10VI	GCNNNNNNNGC	2 cut(s)	456, 554
HpyF3I	CTNAG	4 cut(s)	407, 667, 816, 947
HpySE526I	ACGT	1 cut(s)	110
Hsp92I	GRCGYC	1 cut(s)	110
Hsp92II	CATG	7 cut(s)	169, 335, 348, 377, 392, 406, 692
HspAI	GCGC	2 cut(s)	555, 854
Kzo9I	GATC	1 cut(s)	7
LmnI	GCTCC	2 cut(s)	495, 575
Lsp1109I	GCAGC	3 cut(s)	613, 641, 942
LweI	GCATC	2 cut(s)	435, 885
MaeI	CTAG	1 cut(s)	11
MaeII	ACGT	1 cut(s)	110
MaeIII	GTNAC	3 cut(s)	47, 160, 977
MalI	GATC	1 cut(s)	9
MboI	GATC	1 cut(s)	7
MboII	GAAGA	4 cut(s)	93, 273, 509, 674
MfeI	CAATTG	1 cut(s)	178
MhlI	GDGCHC	2 cut(s)	805, 927
MlsI	TGGCCA	1 cut(s)	221
MluCI	AATT	2 cut(s)	178, 443
MluNI	TGGCCA	1 cut(s)	221
MlyI	GAGTC	2 cut(s)	107, 790
MmeI	TCCRAC	3 cut(s)	67, 764, 983
MnlI	CCTC	7 cut(s)	11, 14, 299, 342, 696, 707, 899
Mox20I	TGGCCA	1 cut(s)	221
MscI	TGGCCA	1 cut(s)	221
MslI	CAYNNNNRTG	4 cut(s)	170, 336, 378, 389
Msp20I	TGGCCA	1 cut(s)	221
MspA1I	CMGCKG	3 cut(s)	268, 797, 933
MspI	CCGG	1 cut(s)	378
MspR9I	CCNGG	1 cut(s)	223
MunI	CAATTG	1 cut(s)	178
MvaI	CCWGG	1 cut(s)	223
MvnI	CGCG	1 cut(s)	459
MwoI	GCNNNNNNNGC	2 cut(s)	456, 554
NdeII	GATC	1 cut(s)	7
NlaIII	CATG	7 cut(s)	169, 335, 348, 377, 392, 406, 692
NlaIV	GGNNCC	1 cut(s)	123
NmeAIII	GCCGAG	1 cut(s)	210
NspI	RCATGY	2 cut(s)	377, 406
NspV	TTCGAA	1 cut(s)	204
PaeI	GCATGC	1 cut(s)	377
PceI	AGGCCT	1 cut(s)	309
PcsI	WCGNNNNNNNCGW	2 cut(s)	93, 110
PfeI	GAWTC	2 cut(s)	679, 787
PflMI	CCANNNNNTGG	1 cut(s)	969
PkrI	GCNGC	4 cut(s)	27, 628, 631, 932
PleI	GAGTC	2 cut(s)	106, 789
PpsI	GAGTC	2 cut(s)	106, 789
Psp6I	CCWGG	1 cut(s)	221
PspGI	CCWGG	1 cut(s)	221
PspN4I	GGNNCC	1 cut(s)	123
PspPI	GGNCC	2 cut(s)	23, 275
PstI	CTGCAG	3 cut(s)	315, 631, 932
PvuII	CAGCTG	2 cut(s)	797, 933
RsaI	GTAC	5 cut(s)	80, 320, 330, 747, 821
RsaNI	GTAC	5 cut(s)	79, 319, 329, 746, 820
RseI	CAYNNNNRTG	4 cut(s)	170, 336, 378, 389
SatI	GCNGC	4 cut(s)	26, 627, 630, 931
Sau3AI	GATC	1 cut(s)	7
Sau96I	GGNCC	2 cut(s)	23, 275
ScaI	AGTACT	1 cut(s)	80
SchI	GAGTC	2 cut(s)	107, 790
ScrFI	CCNGG	1 cut(s)	223
SduI	GDGCHC	2 cut(s)	805, 927
SfaNI	GCATC	2 cut(s)	435, 885
SfcI	CTRYAG	3 cut(s)	311, 627, 928
SfuI	TTCGAA	1 cut(s)	204
SinI	GGWCC	1 cut(s)	275
SmiMI	CAYNNNNRTG	4 cut(s)	170, 336, 378, 389
SphI	GCATGC	1 cut(s)	377
Sse9I	AATT	2 cut(s)	178, 443
SseBI	AGGCCT	1 cut(s)	309
SsiI	CCGC	2 cut(s)	26, 266
SspI	AATATT	1 cut(s)	535
SspMI	CTAG	1 cut(s)	11
StuI	AGGCCT	1 cut(s)	309
StyD4I	CCNGG	1 cut(s)	221
StyI	CCWWGG	2 cut(s)	736, 861
TaaI	ACNGT	2 cut(s)	47, 883
TaiI	ACGT	1 cut(s)	113
TaqI	TCGA	1 cut(s)	204
TasI	AATT	2 cut(s)	178, 443
TatI	WGTACW	4 cut(s)	78, 328, 745, 819
TauI	GCSGC	1 cut(s)	28
TfiI	GAWTC	2 cut(s)	679, 787
TscAI	CASTG	2 cut(s)	320, 932
TseI	GCWGC	3 cut(s)	626, 629, 930
TspDTI	ATGAA	2 cut(s)	354, 377
TspGWI	ACGGA	1 cut(s)	419
TspRI	CASTG	2 cut(s)	320, 932
Van91I	CCANNNNNTGG	1 cut(s)	969
VpaK11BI	GGWCC	1 cut(s)	275
XbaI	TCTAGA	1 cut(s)	10
XceI	RCATGY	2 cut(s)	377, 406
XcmI	CCANNNNNNNNNTGG	2 cut(s)	193, 966
XmiI	GTMKAC	1 cut(s)	878
XspI	CTAG	1 cut(s)	11
ZraI	GACGTC	1 cut(s)	111
ZrmI	AGTACT	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.