Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0006450

Physical Location & Seq

Genomic Coordinates Reverse (-)

10296409 .. 10299435

Gene Structure 3027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G092700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGCTGATCTAGAACGAGCAGGAACAGAAAAACCCAGAGCCAACAGCAGTTACAACCCAAACCAGTACTATGTGGGAACTCAGGAGCATCAATGGACATCCTGGTTGATTCCTATGTTTGTGGTGGCCAATATTATTGTCTTCATTGTGGCTATGTTTGTCAACAACTGTCCAAGGAACAATACTGGTAGTGATGGCAAGTGTGTAGCCAAGTTTCTTGGTCGGCTTTCATTTCAGCCTCTCCGGGAGAACCCTCTATTTGGCCCATCTTCTTCCACATTGGAAAAATTGGGAGCTCTGAAGTGGTCCAAGGTTGTACATGGGCATCAAGGATGGAGACTTGTCACTTGTATGTGGTTGCATGCCGGTGTCATTCATTTGCTTGCAAACATGCTGAGCTTGATCTTTATCGGCATACGCCTAGAACAGCAATTTGGGTTTGTGCGCGTGGGAATAATCTACCTGTTGTCAGGACTTGGTGGGAGCATATTATCAGCCCTTTTTATTCAGAGCAATATTTCTGTTGGTGCTTCTGGCGCTCTGTTTGGACTTCTGGGAGCTATGTTATCGGAGCTTCTCACTAACTGGAGTATATACACCAACAAGGCTGCAGCTCTGTTGACGCTTATAGTCATTATCGCCATTAACTTAGCAGTTGGAATTCTTCCTCATGTTGACAACTTCGCCCACATCGGAGGATTCTTGGCTGGGTTTCTCCTTGGTTTCATTTTGCTCCTTCGTCCTCAGTTTGGATGGATGGAGAGTCGGAATCTTCCAGCTGACACTCGTGTCAAATCTAAGCACAAGCCTTATCAATATATTCTTTTGTTGGTTGCCTCTGCCTTACTGATTGCTGGATTAACTACTGGATTGGTGTTGCTGTTCAAAGGAGAGAACTTAAACAAGCACTGCAGCTGGTGCCATTACCTAAGCTGTGTGCCAACCTCAAGATGGAAATGTGGGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005911 GO:0006508 GO:0006807 GO:0006928 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008283 GO:0009506 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0016787 GO:0017171 GO:0019222 GO:0019538 GO:0023051 GO:0030054 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0055044 GO:0060255 GO:0061136 GO:0065007 GO:0070011 GO:0070201 GO:0071704 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:0140096 GO:1901184 GO:1901564 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

323

Amino Acids

35.45

Weight (kDa)

9.55

Isoelectric Point (pI)

28.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12750 AT1G12750 AT1G12750 AT1G12750 AT1G12750 AT1G12750 AT1G12750 AT1G63120 AT4G23070
fragaria_vesca	FvH4_5g01700 FvH4_5g01700 FvH4_5g01700
malus_domestica	MD04G1065500.v1.1
prunus_persica	Prupe.5G092700_v2.0.a1
pyrus_communis	pycom04g05900 pycom06g07360
rosa_chinensis	RchiOBHm_Chr7g0199021
rosa_laevigata	RLG00000003823
rosa_multiflora	Rmu_sc0006266.1_g000029
rosa_roxburghii	Rroxscaffold_3G00257210
rosa_rugosa	Rorug07G0052100
rosa_samantha	Rh7AG175200 Rh7BG178600 Rh7CG184400 Rh7DG178000
rosa_wichuraiana	Rw7G015370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	788
AccB1I	GGYRCC	1 cut(s)	918
AccII	CGCG	1 cut(s)	447
AcoI	YGGCCR	1 cut(s)	126
AcsI	RAATTY	1 cut(s)	660
AcuI	CTGAAG	1 cut(s)	320
AfaI	GTAC	2 cut(s)	68, 318
AfiI	CCNNNNNNNGG	3 cut(s)	260, 749, 951
AgsI	TTSAA	1 cut(s)	886
AjnI	CCWGG	1 cut(s)	101
AjuI	GAANNNNNNNTTGG	2 cut(s)	417, 449
AluBI	AGCT	8 cut(s)	296, 399, 560, 574, 614, 779, 915, 933
AluI	AGCT	8 cut(s)	296, 399, 560, 574, 614, 779, 915, 933
Alw21I	GWGCWC	1 cut(s)	298
Alw26I	GTCTC	1 cut(s)	331
AoxI	GGCC	2 cut(s)	126, 262
ApeKI	GCWGC	3 cut(s)	608, 611, 912
ApoI	RAATTY	1 cut(s)	660
AspLEI	GCGC	2 cut(s)	447, 539
AspS9I	GGNCC	2 cut(s)	263, 306
AsuC2I	CCSGG	1 cut(s)	245
AvaII	GGWCC	1 cut(s)	306
BalI	TGGCCA	1 cut(s)	128
BanI	GGYRCC	1 cut(s)	918
BanII	GRGCYC	1 cut(s)	298
BauI	CACGAG	1 cut(s)	786
BbsI	GAAGAC	1 cut(s)	133
Bbv12I	GWGCWC	1 cut(s)	298
BbvI	GCAGC	3 cut(s)	595, 623, 924
BccI	CCATC	6 cut(s)	188, 274, 327, 747, 751, 945
BciT130I	CCWGG	1 cut(s)	103
BcnI	CCSGG	1 cut(s)	245
BcoDI	GTCTC	1 cut(s)	331
BfaI	CTAG	2 cut(s)	11, 422
BfmI	CTRYAG	2 cut(s)	609, 910
BfoI	RGCGCY	1 cut(s)	540
BisI	GCNGC	3 cut(s)	609, 612, 913
BlpI	GCTNAGC	1 cut(s)	395
BlsI	GCNGC	3 cut(s)	610, 613, 914
BmcAI	AGTACT	1 cut(s)	68
Bme1390I	CCNGG	2 cut(s)	103, 245
Bme18I	GGWCC	1 cut(s)	306
BmgT120I	GGNCC	2 cut(s)	263, 306
BmiI	GGNNCC	1 cut(s)	920
BmrFI	CCNGG	2 cut(s)	103, 245
BmsI	GCATC	2 cut(s)	97, 334
BpiI	GAAGAC	1 cut(s)	133
BpmI	CTGGAG	1 cut(s)	607
Bpu10I	CCTNAGC	1 cut(s)	929
Bpu1102I	GCTNAGC	1 cut(s)	395
BpuEI	CTTGAG	1 cut(s)	931
BpuMI	CCSGG	1 cut(s)	245
BsaBI	GATNNNNATC	1 cut(s)	407
BsaJI	CCNNGG	3 cut(s)	173, 309, 718
Bsc4I	CCNNNNNNNGG	3 cut(s)	260, 749, 951
Bse118I	RCCGGY	1 cut(s)	365
Bse1I	ACTGG	4 cut(s)	64, 190, 590, 871
Bse8I	GATNNNNATC	1 cut(s)	407
BseBI	CCWGG	1 cut(s)	103
BseDI	CCNNGG	3 cut(s)	173, 309, 718
BseGI	GGATG	4 cut(s)	98, 338, 758, 762
BseJI	GATNNNNATC	1 cut(s)	407
BseLI	CCNNNNNNNGG	3 cut(s)	260, 749, 951
BseMII	CTCAG	3 cut(s)	95, 386, 758
BseNI	ACTGG	4 cut(s)	64, 190, 590, 871
BseXI	GCAGC	3 cut(s)	595, 623, 924
BseYI	CCCAGC	1 cut(s)	707
Bsh1236I	CGCG	1 cut(s)	447
BshFI	GGCC	2 cut(s)	128, 264
BshNI	GGYRCC	1 cut(s)	918
BsiHKAI	GWGCWC	1 cut(s)	298
BsiSI	CCGG	2 cut(s)	244, 366
BslI	CCNNNNNNNGG	3 cut(s)	260, 749, 951
BsmAI	GTCTC	1 cut(s)	331
BsnI	GGCC	2 cut(s)	128, 264
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp1407I	TGTACA	1 cut(s)	316
Bsp143I	GATC	2 cut(s)	7, 402
Bsp1720I	GCTNAGC	1 cut(s)	395
BspANI	GGCC	2 cut(s)	128, 264
BspCNI	CTCAG	3 cut(s)	94, 387, 757
BspFNI	CGCG	1 cut(s)	447
BspLI	GGNNCC	1 cut(s)	920
BspMAI	CTGCAG	2 cut(s)	613, 914
BspT107I	GGYRCC	1 cut(s)	918
BsrFI	RCCGGY	1 cut(s)	365
BsrGI	TGTACA	1 cut(s)	316
BsrI	ACTGG	4 cut(s)	64, 190, 590, 871
BssAI	RCCGGY	1 cut(s)	365
BssECI	CCNNGG	3 cut(s)	173, 309, 718
BssMI	GATC	2 cut(s)	7, 402
BssSI	CACGAG	1 cut(s)	786
BssT1I	CCWWGG	3 cut(s)	173, 309, 718
Bst2BI	CACGAG	1 cut(s)	786
Bst2UI	CCWGG	1 cut(s)	103
Bst4CI	ACNGT	1 cut(s)	170
BstAPI	GCANNNNNTGC	1 cut(s)	918
BstAUI	TGTACA	1 cut(s)	316
BstC8I	GCNNGC	2 cut(s)	363, 384
BstDEI	CTNAG	6 cut(s)	81, 395, 649, 744, 798, 929
BstF5I	GGATG	4 cut(s)	98, 338, 758, 762
BstFNI	CGCG	1 cut(s)	447
BstH2I	RGCGCY	1 cut(s)	540
BstHHI	GCGC	2 cut(s)	447, 539
BstKTI	GATC	2 cut(s)	10, 405
BstMAI	GTCTC	1 cut(s)	331
BstMBI	GATC	2 cut(s)	7, 402
BstMWI	GCNNNNNNNGC	2 cut(s)	536, 918
BstNI	CCWGG	1 cut(s)	103
BstNSI	RCATGY	2 cut(s)	365, 394
BstSCI	CCNGG	2 cut(s)	101, 243
BstSFI	CTRYAG	2 cut(s)	609, 910
BstUI	CGCG	1 cut(s)	447
BstV1I	GCAGC	3 cut(s)	595, 623, 924
BstV2I	GAAGAC	1 cut(s)	133
BsuRI	GGCC	2 cut(s)	128, 264
BtsCI	GGATG	4 cut(s)	98, 338, 758, 762
BtsI	GCAGTG	1 cut(s)	907
BtsIMutI	CAGTG	1 cut(s)	907
Cac8I	GCNNGC	2 cut(s)	363, 384
CfoI	GCGC	2 cut(s)	447, 539
Cfr10I	RCCGGY	1 cut(s)	365
Cfr13I	GGNCC	2 cut(s)	263, 306
CseI	GACGC	1 cut(s)	631
Csp6I	GTAC	2 cut(s)	67, 317
CviAII	CATG	4 cut(s)	320, 362, 391, 671
CviQI	GTAC	2 cut(s)	67, 317
DdeI	CTNAG	6 cut(s)	81, 395, 649, 744, 798, 929
DpnI	GATC	2 cut(s)	9, 404
DpnII	GATC	2 cut(s)	7, 402
DrdI	GACNNNNNNGTC	1 cut(s)	788
DseDI	GACNNNNNNGTC	1 cut(s)	788
EaeI	YGGCCR	1 cut(s)	126
Ecl136II	GAGCTC	1 cut(s)	296
Eco130I	CCWWGG	3 cut(s)	173, 309, 718
Eco24I	GRGCYC	1 cut(s)	298
Eco47I	GGWCC	1 cut(s)	306
Eco53kI	GAGCTC	1 cut(s)	296
Eco57I	CTGAAG	1 cut(s)	320
EcoICRI	GAGCTC	1 cut(s)	296
EcoRI	GAATTC	1 cut(s)	660
EcoRII	CCWGG	1 cut(s)	101
EcoT14I	CCWWGG	3 cut(s)	173, 309, 718
EcoT38I	GRGCYC	1 cut(s)	298
ErhI	CCWWGG	3 cut(s)	173, 309, 718
FaeI	CATG	4 cut(s)	323, 365, 394, 674
FatI	CATG	4 cut(s)	319, 361, 390, 670
Fnu4HI	GCNGC	3 cut(s)	609, 612, 913
FokI	GGATG	4 cut(s)	85, 345, 765, 769
FriOI	GRGCYC	1 cut(s)	298
Fsp4HI	GCNGC	3 cut(s)	609, 612, 913
FspBI	CTAG	2 cut(s)	11, 422
GlaI	GCGC	2 cut(s)	446, 538
GluI	GCNGC	3 cut(s)	609, 612, 913
GsaI	CCCAGC	1 cut(s)	711
GsuI	CTGGAG	1 cut(s)	607
HaeII	RGCGCY	1 cut(s)	540
HaeIII	GGCC	2 cut(s)	128, 264
HapII	CCGG	2 cut(s)	244, 366
HgaI	GACGC	1 cut(s)	631
HhaI	GCGC	2 cut(s)	447, 539
Hin1II	CATG	4 cut(s)	323, 365, 394, 674
Hin6I	GCGC	2 cut(s)	445, 537
HinP1I	GCGC	2 cut(s)	445, 537
HincII	GTYRAC	3 cut(s)	163, 621, 676
HindII	GTYRAC	3 cut(s)	163, 621, 676
HinfI	GANTC	4 cut(s)	109, 699, 763, 769
HpaII	CCGG	2 cut(s)	244, 366
Hpy166II	GTNNAC	3 cut(s)	163, 621, 676
Hpy188I	TCNGA	5 cut(s)	300, 510, 571, 695, 768
Hpy188III	TCNNGA	4 cut(s)	11, 83, 471, 948
Hpy8I	GTNNAC	3 cut(s)	163, 621, 676
HpyAV	CCTTC	1 cut(s)	746
HpyCH4III	ACNGT	1 cut(s)	170
HpyCH4V	TGCA	4 cut(s)	361, 386, 611, 912
HpyF10VI	GCNNNNNNNGC	2 cut(s)	536, 918
HpyF3I	CTNAG	6 cut(s)	81, 395, 649, 744, 798, 929
Hsp92II	CATG	4 cut(s)	323, 365, 394, 674
HspAI	GCGC	2 cut(s)	445, 537
Kzo9I	GATC	2 cut(s)	7, 402
LmnI	GCTCC	6 cut(s)	85, 293, 483, 557, 571, 738
Lsp1109I	GCAGC	3 cut(s)	595, 623, 924
LweI	GCATC	2 cut(s)	97, 334
MaeI	CTAG	2 cut(s)	11, 422
MaeIII	GTNAC	2 cut(s)	50, 343
MalI	GATC	2 cut(s)	9, 404
MboI	GATC	2 cut(s)	7, 402
MboII	GAAGA	5 cut(s)	133, 261, 264, 656, 764
MhlI	GDGCHC	1 cut(s)	298
MlsI	TGGCCA	1 cut(s)	128
MluCI	AATT	3 cut(s)	287, 431, 660
MluNI	TGGCCA	1 cut(s)	128
MlyI	GAGTC	1 cut(s)	772
MmeI	TCCRAC	2 cut(s)	637, 746
MnlI	CCTC	7 cut(s)	249, 264, 678, 689, 753, 847, 955
Mox20I	TGGCCA	1 cut(s)	128
MscI	TGGCCA	1 cut(s)	128
MseI	TTAA	3 cut(s)	645, 860, 899
MslI	CAYNNNNRTG	2 cut(s)	350, 366
Msp20I	TGGCCA	1 cut(s)	128
MspA1I	CMGCKG	2 cut(s)	779, 915
MspI	CCGG	2 cut(s)	244, 366
MspR9I	CCNGG	2 cut(s)	103, 245
MvaI	CCWGG	1 cut(s)	103
MvnI	CGCG	1 cut(s)	447
MwoI	GCNNNNNNNGC	2 cut(s)	536, 918
NciI	CCSGG	1 cut(s)	245
NdeII	GATC	2 cut(s)	7, 402
NlaIII	CATG	4 cut(s)	323, 365, 394, 674
NlaIV	GGNNCC	1 cut(s)	920
NmuCI	GTSAC	1 cut(s)	343
NspI	RCATGY	2 cut(s)	365, 394
PaeI	GCATGC	1 cut(s)	365
PfeI	GAWTC	3 cut(s)	109, 699, 769
PfoI	TCCNGGA	1 cut(s)	243
PkrI	GCNGC	3 cut(s)	610, 613, 914
PleI	GAGTC	1 cut(s)	771
PpsI	GAGTC	1 cut(s)	771
Psp124BI	GAGCTC	1 cut(s)	298
Psp6I	CCWGG	1 cut(s)	101
PspFI	CCCAGC	1 cut(s)	707
PspGI	CCWGG	1 cut(s)	101
PspN4I	GGNNCC	1 cut(s)	920
PspPI	GGNCC	2 cut(s)	263, 306
PstI	CTGCAG	2 cut(s)	613, 914
PvuII	CAGCTG	2 cut(s)	779, 915
RsaI	GTAC	2 cut(s)	68, 318
RsaNI	GTAC	2 cut(s)	67, 317
RseI	CAYNNNNRTG	2 cut(s)	350, 366
SacI	GAGCTC	1 cut(s)	298
SaqAI	TTAA	3 cut(s)	645, 860, 899
SatI	GCNGC	3 cut(s)	609, 612, 913
Sau3AI	GATC	2 cut(s)	7, 402
Sau96I	GGNCC	2 cut(s)	263, 306
ScaI	AGTACT	1 cut(s)	68
SchI	GAGTC	1 cut(s)	772
ScrFI	CCNGG	2 cut(s)	103, 245
SduI	GDGCHC	1 cut(s)	298
SfaNI	GCATC	2 cut(s)	97, 334
SfcI	CTRYAG	2 cut(s)	609, 910
SinI	GGWCC	1 cut(s)	306
SmiMI	CAYNNNNRTG	2 cut(s)	350, 366
SmlI	CTYRAG	1 cut(s)	946
SmoI	CTYRAG	1 cut(s)	946
SphI	GCATGC	1 cut(s)	365
Sse9I	AATT	3 cut(s)	287, 431, 660
SspI	AATATT	2 cut(s)	133, 517
SspMI	CTAG	2 cut(s)	11, 422
SstI	GAGCTC	1 cut(s)	298
StyD4I	CCNGG	2 cut(s)	101, 243
StyI	CCWWGG	3 cut(s)	173, 309, 718
TaaI	ACNGT	1 cut(s)	170
TasI	AATT	3 cut(s)	287, 431, 660
TatI	WGTACW	2 cut(s)	66, 316
TfiI	GAWTC	3 cut(s)	109, 699, 769
Tru1I	TTAA	3 cut(s)	645, 860, 899
Tru9I	TTAA	3 cut(s)	645, 860, 899
TscAI	CASTG	1 cut(s)	914
TseFI	GTSAC	1 cut(s)	343
TseI	GCWGC	3 cut(s)	608, 611, 912
Tsp45I	GTSAC	1 cut(s)	343
TspDTI	ATGAA	4 cut(s)	133, 219, 365, 715
TspRI	CASTG	1 cut(s)	914
VpaK11BI	GGWCC	1 cut(s)	306
XapI	RAATTY	1 cut(s)	660
XbaI	TCTAGA	1 cut(s)	10
XceI	RCATGY	2 cut(s)	365, 394
XcmI	CCANNNNNNNNNTGG	1 cut(s)	948
XspI	CTAG	2 cut(s)	11, 422
ZrmI	AGTACT	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.