Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006450

Physical Location & Seq

Genomic Coordinates Reverse (-)

12090690 .. 12092217

Gene Structure 1528 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G23070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGCTTTCCACAGCAGCAGAGGAAGATCCTGAAGGAGGAAGCAGAGAAACTAATAATGGCGGCGAGACGACACCGGACATGCAATGGAGATCGTGGATTATCCCAATAGTAGTGATTGCTAACGTCGTCGTTTTCGTTGTTGTAATGTACTATAATGATTGTCCTCACAAAAGCCATCGATGTCTTGCAAAGTTCCTCGGACGATTCTCTTTTGAGTCTTTCAAGTCTAATCCTCTTCTTGGTCCTTCTTCCTCTACGTTGGAGAAAATGGGAGCTTTGGCGTGGGGGAAAATAGTTCACAAGCGTCAAGTTTGGAGACTATTAACATGTATGTGGTTGCACGCTGGCGTTATTCATTTGTTAGCAAACATGTGTTGTGTTGCCTACATTGGAGTTCGTCTCGAGCAGCAGTTTGGTTTTGTTCGAGTCGGGACGATCTACCTTGTATCGGGTTTCTGTGGGAGCATATTATCTTGTTTGTTTCTTGAGGATGCTATATCTGTTGGTGCCTCTAGTGCTTTGTTTGGACTCTTAGGAGCAATGTTATCTGAATTGTTAATCAACTGGACAACCTATGACAACAAGGGTGTGGCTATAGTAATGCTTTTGGTGATTGTTGGTGTTAACTTAGGATTAGGAACACTTCCTCCTGTTGATAATTTTGCTCATATTGGAGGTTTCTTTGGTGGTTTTCTACTCGGTTTTCTTCTCTTGATTCATCCGCAGTTCGAATGGGAAGAAAACCAAGTTTCTCTTATGCCTGGTACCATTGTTAAACCCAAGTACAACACTTGCCAACTCGTGCTTTGCATAGTTGCATCGATCGTCTTTGTCGCAGGGTTTACTTCTGGATTGGTGATACTATTCAGAGGAGATAGCTTGAACAGATATTGTAAGTGGTGCCATAAACTAAGCTACTCCTCTAAATCCCAATGGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005911 GO:0006508 GO:0006807 GO:0006928 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008283 GO:0009506 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0016787 GO:0017171 GO:0019222 GO:0019538 GO:0023051 GO:0030054 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0055044 GO:0060255 GO:0061136 GO:0065007 GO:0070011 GO:0070201 GO:0071704 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:0140096 GO:1901184 GO:1901564 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

313

Amino Acids

34.53

Weight (kDa)

7.99

Isoelectric Point (pI)

30.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	102 - 238	1.7e-42	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12750 AT1G12750 AT1G12750 AT1G12750 AT1G12750 AT1G12750 AT1G12750 AT1G63120 AT4G23070
fragaria_vesca	FvH4_5g01700 FvH4_5g01700 FvH4_5g01700
malus_domestica	MD04G1065500.v1.1
prunus_persica	Prupe.5G092700_v2.0.a1
pyrus_communis	pycom04g05900 pycom06g07360
rosa_chinensis	RchiOBHm_Chr7g0199021
rosa_laevigata	RLG00000003823
rosa_multiflora	Rmu_sc0006266.1_g000029
rosa_roxburghii	Rroxscaffold_3G00257210
rosa_rugosa	Rorug07G0052100
rosa_samantha	Rh7AG175200 Rh7BG178600 Rh7CG184400 Rh7DG178000
rosa_wichuraiana	Rw7G015370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	764
AccB1I	GGYRCC	3 cut(s)	506, 764, 900
AciI	CCGC	2 cut(s)	60, 722
AclWI	GGATC	1 cut(s)	20
AcuI	CTGAAG	1 cut(s)	51
AfaI	GTAC	3 cut(s)	149, 766, 785
AfiI	CCNNNNNNNGG	3 cut(s)	35, 239, 448
AflIII	ACRYGT	2 cut(s)	326, 369
AgsI	TTSAA	2 cut(s)	223, 883
AjnI	CCWGG	1 cut(s)	760
AloI	GAACNNNNNNTCC	2 cut(s)	631, 663
AluBI	AGCT	3 cut(s)	275, 879, 915
AluI	AGCT	3 cut(s)	275, 879, 915
Alw26I	GTCTC	3 cut(s)	59, 310, 404
AlwI	GGATC	1 cut(s)	20
Ama87I	CYCGRG	1 cut(s)	401
ApeKI	GCWGC	2 cut(s)	14, 406
Asp718I	GGTACC	1 cut(s)	764
AspS9I	GGNCC	1 cut(s)	242
AsuHPI	GGTGA	2 cut(s)	622, 868
AsuII	TTCGAA	1 cut(s)	729
AvaI	CYCGRG	1 cut(s)	401
AvaII	GGWCC	1 cut(s)	242
BaeI	ACNNNNGTAYC	2 cut(s)	756, 789
BanI	GGYRCC	3 cut(s)	506, 764, 900
BauI	CACGAG	1 cut(s)	800
BbvI	GCAGC	2 cut(s)	26, 418
BccI	CCATC	1 cut(s)	183
BciT130I	CCWGG	1 cut(s)	762
BcoDI	GTCTC	3 cut(s)	59, 310, 404
BfaI	CTAG	1 cut(s)	513
BfmI	CTRYAG	1 cut(s)	594
BisI	GCNGC	3 cut(s)	15, 61, 407
BlsI	GCNGC	3 cut(s)	16, 62, 408
Bme1390I	CCNGG	1 cut(s)	762
Bme18I	GGWCC	1 cut(s)	242
BmeT110I	CYCGRG	1 cut(s)	401
BmgT120I	GGNCC	1 cut(s)	242
BmiI	GGNNCC	3 cut(s)	508, 766, 902
BmrFI	CCNGG	1 cut(s)	762
BmsI	GCATC	2 cut(s)	481, 827
BplI	GAGNNNNNCTC	2 cut(s)	384, 416
Bpu14I	TTCGAA	1 cut(s)	729
BpuEI	CTTGAG	1 cut(s)	506
Bsa29I	ATCGAT	2 cut(s)	178, 821
BsaJI	CCNNGG	1 cut(s)	196
BsaWI	WCCGGW	1 cut(s)	73
BsaXI	ACNNNNNCTCC	2 cut(s)	631, 661
Bsc4I	CCNNNNNNNGG	3 cut(s)	35, 239, 448
Bse1I	ACTGG	1 cut(s)	569
Bse3DI	GCAATG	2 cut(s)	89, 546
BseBI	CCWGG	1 cut(s)	762
BseCI	ATCGAT	2 cut(s)	178, 821
BseDI	CCNNGG	1 cut(s)	196
BseGI	GGATG	2 cut(s)	496, 718
BseLI	CCNNNNNNNGG	3 cut(s)	35, 239, 448
BseMI	GCAATG	2 cut(s)	89, 546
BseNI	ACTGG	1 cut(s)	569
BseRI	GAGGAG	2 cut(s)	885, 910
BseXI	GCAGC	2 cut(s)	26, 418
Bsh1285I	CGRYCG	1 cut(s)	825
BshNI	GGYRCC	3 cut(s)	506, 764, 900
BshVI	ATCGAT	2 cut(s)	178, 821
BsiEI	CGRYCG	1 cut(s)	825
BsiHKCI	CYCGRG	1 cut(s)	401
BsiSI	CCGG	1 cut(s)	74
BslFI	GGGAC	1 cut(s)	445
BslI	CCNNNNNNNGG	3 cut(s)	35, 239, 448
BsmAI	GTCTC	3 cut(s)	59, 310, 404
BsmBI	CGTCTC	2 cut(s)	59, 404
BsmFI	GGGAC	1 cut(s)	445
BsoBI	CYCGRG	1 cut(s)	401
Bsp119I	TTCGAA	1 cut(s)	729
Bsp143I	GATC	4 cut(s)	25, 89, 435, 822
BspACI	CCGC	2 cut(s)	60, 722
BspDI	ATCGAT	2 cut(s)	178, 821
BspLI	GGNNCC	3 cut(s)	508, 766, 902
BspPI	GGATC	1 cut(s)	20
BspT104I	TTCGAA	1 cut(s)	729
BspT107I	GGYRCC	3 cut(s)	506, 764, 900
BsrDI	GCAATG	2 cut(s)	89, 546
BsrI	ACTGG	1 cut(s)	569
BssECI	CCNNGG	1 cut(s)	196
BssMI	GATC	4 cut(s)	25, 89, 435, 822
BssSI	CACGAG	1 cut(s)	800
Bst2BI	CACGAG	1 cut(s)	800
Bst2UI	CCWGG	1 cut(s)	762
Bst6I	CTCTTC	1 cut(s)	240
BstBI	TTCGAA	1 cut(s)	729
BstC8I	GCNNGC	2 cut(s)	342, 346
BstDEI	CTNAG	3 cut(s)	532, 628, 911
BstENI	CCTNNNNNAGG	1 cut(s)	33
BstF5I	GGATG	2 cut(s)	496, 718
BstKTI	GATC	4 cut(s)	28, 92, 438, 825
BstMAI	GTCTC	3 cut(s)	59, 310, 404
BstMBI	GATC	4 cut(s)	25, 89, 435, 822
BstMCI	CGRYCG	1 cut(s)	825
BstMWI	GCNNNNNNNGC	1 cut(s)	515
BstNI	CCWGG	1 cut(s)	762
BstNSI	RCATGY	3 cut(s)	82, 330, 373
BstSCI	CCNGG	1 cut(s)	760
BstSFI	CTRYAG	1 cut(s)	594
BstV1I	GCAGC	2 cut(s)	26, 418
BstX2I	RGATCY	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	25
Bsu15I	ATCGAT	2 cut(s)	178, 821
BsuTUI	ATCGAT	2 cut(s)	178, 821
BtsCI	GGATG	2 cut(s)	496, 718
Cac8I	GCNNGC	2 cut(s)	342, 346
Cfr13I	GGNCC	1 cut(s)	242
ClaI	ATCGAT	2 cut(s)	178, 821
CseI	GACGC	1 cut(s)	293
Csp6I	GTAC	3 cut(s)	148, 765, 784
CviAII	CATG	4 cut(s)	79, 327, 370, 939
CviJI	RGCY	5 cut(s)	174, 275, 593, 879, 915
CviKI_1	RGCY	5 cut(s)	174, 275, 593, 879, 915
CviQI	GTAC	3 cut(s)	148, 765, 784
DdeI	CTNAG	3 cut(s)	532, 628, 911
DpnI	GATC	4 cut(s)	27, 91, 437, 824
DpnII	GATC	4 cut(s)	25, 89, 435, 822
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
Eco47I	GGWCC	1 cut(s)	242
Eco57I	CTGAAG	1 cut(s)	51
Eco88I	CYCGRG	1 cut(s)	401
EcoNI	CCTNNNNNAGG	1 cut(s)	33
EcoRII	CCWGG	1 cut(s)	760
Esp3I	CGTCTC	2 cut(s)	59, 404
FaeI	CATG	4 cut(s)	82, 330, 373, 942
FalI	AAGNNNNNCTT	2 cut(s)	738, 770
FaqI	GGGAC	1 cut(s)	445
FatI	CATG	4 cut(s)	78, 326, 369, 938
Fnu4HI	GCNGC	3 cut(s)	15, 61, 407
FokI	GGATG	2 cut(s)	503, 705
Fsp4HI	GCNGC	3 cut(s)	15, 61, 407
FspBI	CTAG	1 cut(s)	513
GluI	GCNGC	3 cut(s)	15, 61, 407
HapII	CCGG	1 cut(s)	74
HgaI	GACGC	1 cut(s)	293
Hin1II	CATG	4 cut(s)	82, 330, 373, 942
HincII	GTYRAC	1 cut(s)	625
HindII	GTYRAC	1 cut(s)	625
HinfI	GANTC	5 cut(s)	204, 215, 426, 528, 715
HpaI	GTTAAC	1 cut(s)	625
HpaII	CCGG	1 cut(s)	74
HphI	GGTGA	2 cut(s)	622, 868
Hpy166II	GTNNAC	3 cut(s)	298, 625, 843
Hpy188I	TCNGA	3 cut(s)	200, 550, 869
Hpy188III	TCNNGA	6 cut(s)	29, 401, 430, 485, 712, 849
Hpy8I	GTNNAC	3 cut(s)	298, 625, 843
Hpy99I	CGWCG	2 cut(s)	128, 131
HpyAV	CCTTC	2 cut(s)	26, 255
HpyCH4IV	ACGT	2 cut(s)	123, 257
HpyCH4V	TGCA	5 cut(s)	82, 188, 340, 810, 818
HpyF10VI	GCNNNNNNNGC	1 cut(s)	515
HpyF3I	CTNAG	3 cut(s)	532, 628, 911
HpySE526I	ACGT	2 cut(s)	123, 257
Hsp92II	CATG	4 cut(s)	82, 330, 373, 942
KpnI	GGTACC	1 cut(s)	768
KspAI	GTTAAC	1 cut(s)	625
Kzo9I	GATC	4 cut(s)	25, 89, 435, 822
LmnI	GCTCC	3 cut(s)	272, 462, 536
LpnPI	CCDG	9 cut(s)	42, 87, 330, 550, 663, 747, 774, 822, 834
Lsp1109I	GCAGC	2 cut(s)	26, 418
LweI	GCATC	2 cut(s)	481, 827
MaeI	CTAG	1 cut(s)	513
MaeII	ACGT	2 cut(s)	123, 257
MalI	GATC	4 cut(s)	27, 91, 437, 824
MboI	GATC	4 cut(s)	25, 89, 435, 822
MboII	GAAGA	5 cut(s)	35, 227, 240, 698, 749
MflI	RGATCY	1 cut(s)	25
MluCI	AATT	2 cut(s)	551, 658
MlyI	GAGTC	3 cut(s)	224, 435, 522
MmeI	TCCRAC	1 cut(s)	240
MseI	TTAA	4 cut(s)	323, 557, 624, 774
MslI	CAYNNNNRTG	1 cut(s)	331
MspI	CCGG	1 cut(s)	74
MspR9I	CCNGG	1 cut(s)	762
MvaI	CCWGG	1 cut(s)	762
MwoI	GCNNNNNNNGC	1 cut(s)	515
NdeII	GATC	4 cut(s)	25, 89, 435, 822
NlaIII	CATG	4 cut(s)	82, 330, 373, 942
NlaIV	GGNNCC	3 cut(s)	508, 766, 902
NspI	RCATGY	3 cut(s)	82, 330, 373
NspV	TTCGAA	1 cut(s)	729
PaeR7I	CTCGAG	1 cut(s)	401
PciI	ACATGT	2 cut(s)	326, 369
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PfeI	GAWTC	2 cut(s)	204, 715
PkrI	GCNGC	3 cut(s)	16, 62, 408
Ple19I	CGATCG	1 cut(s)	825
PleI	GAGTC	3 cut(s)	223, 434, 522
PpsI	GAGTC	3 cut(s)	223, 434, 522
PscI	ACATGT	2 cut(s)	326, 369
Psp6I	CCWGG	1 cut(s)	760
PspGI	CCWGG	1 cut(s)	760
PspN4I	GGNNCC	3 cut(s)	508, 766, 902
PspPI	GGNCC	1 cut(s)	242
PsuI	RGATCY	1 cut(s)	25
PvuI	CGATCG	1 cut(s)	825
RsaI	GTAC	3 cut(s)	149, 766, 785
RsaNI	GTAC	3 cut(s)	148, 765, 784
RseI	CAYNNNNRTG	1 cut(s)	331
SaqAI	TTAA	4 cut(s)	323, 557, 624, 774
SatI	GCNGC	3 cut(s)	15, 61, 407
Sau3AI	GATC	4 cut(s)	25, 89, 435, 822
Sau96I	GGNCC	1 cut(s)	242
SchI	GAGTC	3 cut(s)	224, 435, 522
ScrFI	CCNGG	1 cut(s)	762
SetI	ASST	8 cut(s)	126, 260, 277, 444, 575, 679, 881, 917
SfaNI	GCATC	2 cut(s)	481, 827
SfcI	CTRYAG	1 cut(s)	594
Sfr274I	CTCGAG	1 cut(s)	401
SfuI	TTCGAA	1 cut(s)	729
SinI	GGWCC	1 cut(s)	242
SlaI	CTCGAG	1 cut(s)	401
SmiMI	CAYNNNNRTG	1 cut(s)	331
SmlI	CTYRAG	2 cut(s)	401, 485
SmoI	CTYRAG	2 cut(s)	401, 485
Sse9I	AATT	2 cut(s)	551, 658
SsiI	CCGC	2 cut(s)	60, 722
SspMI	CTAG	1 cut(s)	513
StyD4I	CCNGG	1 cut(s)	760
TaiI	ACGT	2 cut(s)	126, 260
TaqI	TCGA	5 cut(s)	178, 402, 424, 729, 821
TasI	AATT	2 cut(s)	551, 658
TatI	WGTACW	2 cut(s)	147, 783
TauI	GCSGC	1 cut(s)	63
TfiI	GAWTC	2 cut(s)	204, 715
Tru1I	TTAA	4 cut(s)	323, 557, 624, 774
Tru9I	TTAA	4 cut(s)	323, 557, 624, 774
TseI	GCWGC	2 cut(s)	14, 406
TspDTI	ATGAA	2 cut(s)	344, 707
VpaK11BI	GGWCC	1 cut(s)	242
XagI	CCTNNNNNAGG	1 cut(s)	33
XceI	RCATGY	3 cut(s)	82, 330, 373
XhoI	CTCGAG	1 cut(s)	401
XspI	CTAG	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.