Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006450

Physical Location & Seq

Genomic Coordinates Reverse (-)

23408804 .. 23411139

Gene Structure 2336 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G63120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGCGAACAGAGATGTGGAGAGAGTAGGGAAGAAAAACAGAGGAGCTAATAACAATTATTTCTACGAGGAGTCTTCTGGTGAAACTCATTGGACTTCATGGCTGATTCCGGCGATTGTAGTGGCAAATCTCGCTGTCTTTATCGCTGTTATGTTCGTTAATGATTGTCCTAAGAAAATCACCGGACCTAACAAAGAGTGTGTTGCTAGATTCCTCGGAAGATTCTCGTTTCAACCACTTAAAGAGAATCCTCTCTTTGGTCCTTCTTCTTCAACATTGGAGAAAATGGGAGCATTGGAATGGAGGAAAGTAGTACATGAACATCAAGGATGGAGACTTCTCTCTTGTATGTGGCTTCACGCTGGTATCATTCATCTTCTTACAAACATGTTGAGTTTGATCTTCATTGGTATCCGCCTTGAGCAGCAATTTGGCTTCATAAGAGTCGGGTTGATATACTTAATATCGGGTCTCGGTGGAAGCATACTTTCGTCGCTTTTCCTTCAAGAAAGTATCTCTGTTGGTGCTTCGGGTGCTCTCTTTGGACTTCTTGGAGCAATGTTATCTGAACTTCTTACCAATTGGACTATCTATGCCAACAAGGCGGCTGCTCTGATCACACTTCTGTTCATCATCGCAATCAACTTAGCATTAGGCATGCTTCCTCGGGTTGACAACTTTGCACACATTGGAGGGTTTTTAACCGGATTCTGCCTCGGGTTTGTCCTCCTTGTCCGACCTCAGTACGGTTGGGAAGCTTCCCGCACCAACACTTCGCGAACCAAACGAAAGTATAGCATGTACCAGTACGTGCTGTTTGTAGTTTCAGTGGTGCTACTTGTGGTTGGGCTAACGGTTGCATTAGTGATGCTTTTCAAAGGAGAGAATGGGAACAAACATTGCAAATGGTGTCATTACCTTAGCTGTTTCCCAACTTCTAAATGGACCTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005911 GO:0006508 GO:0006807 GO:0006928 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008283 GO:0009506 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0016787 GO:0017171 GO:0019222 GO:0019538 GO:0023051 GO:0030054 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0055044 GO:0060255 GO:0061136 GO:0065007 GO:0070011 GO:0070201 GO:0071704 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:0140096 GO:1901184 GO:1901564 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

317

Amino Acids

35.41

Weight (kDa)

9.43

Isoelectric Point (pI)

29.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	108 - 244	2.5e-44	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12750 AT1G12750 AT1G12750 AT1G12750 AT1G12750 AT1G12750 AT1G12750 AT1G63120 AT4G23070
fragaria_vesca	FvH4_5g01700 FvH4_5g01700 FvH4_5g01700
malus_domestica	MD04G1065500.v1.1
prunus_persica	Prupe.5G092700_v2.0.a1
pyrus_communis	pycom04g05900 pycom06g07360
rosa_chinensis	RchiOBHm_Chr7g0199021
rosa_laevigata	RLG00000003823
rosa_multiflora	Rmu_sc0006266.1_g000029
rosa_roxburghii	Rroxscaffold_3G00257210
rosa_rugosa	Rorug07G0052100
rosa_samantha	Rh7AG175200 Rh7BG178600 Rh7CG184400 Rh7DG178000
rosa_wichuraiana	Rw7G015370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	778
AciI	CCGC	3 cut(s)	415, 605, 763
AfaI	GTAC	4 cut(s)	315, 746, 803, 809
AfiI	CCNNNNNNNGG	2 cut(s)	257, 746
AflIII	ACRYGT	1 cut(s)	387
AgsI	TTSAA	4 cut(s)	233, 273, 506, 877
AluBI	AGCT	3 cut(s)	47, 758, 924
AluI	AGCT	3 cut(s)	47, 758, 924
Alw21I	GWGCWC	1 cut(s)	538
Alw26I	GTCTC	2 cut(s)	328, 476
Ama87I	CYCGRG	2 cut(s)	666, 716
ApeKI	GCWGC	2 cut(s)	424, 608
AspS9I	GGNCC	3 cut(s)	185, 260, 945
AsuHPI	GGTGA	2 cut(s)	92, 172
AvaI	CYCGRG	2 cut(s)	666, 716
AvaII	GGWCC	3 cut(s)	185, 260, 945
BaeI	ACNNNNGTAYC	2 cut(s)	349, 382
BbsI	GAAGAC	1 cut(s)	66
Bbv12I	GWGCWC	1 cut(s)	538
BbvI	GCAGC	2 cut(s)	436, 595
BccI	CCATC	1 cut(s)	324
BciVI	GTATCC	1 cut(s)	422
BclI	TGATCA	1 cut(s)	615
BcoDI	GTCTC	2 cut(s)	328, 476
BfaI	CTAG	1 cut(s)	207
BfuI	GTATCC	1 cut(s)	422
BglI	GCCNNNNNGGC	1 cut(s)	602
BisI	GCNGC	3 cut(s)	425, 606, 609
BlsI	GCNGC	3 cut(s)	426, 607, 610
Bme18I	GGWCC	3 cut(s)	185, 260, 945
BmeT110I	CYCGRG	2 cut(s)	666, 716
BmgT120I	GGNCC	3 cut(s)	185, 260, 945
BmsI	GCATC	1 cut(s)	858
BpiI	GAAGAC	1 cut(s)	66
Bpu10I	CCTNAGC	1 cut(s)	920
BpuEI	CTTGAG	1 cut(s)	440
BsaAI	YACGTR	1 cut(s)	811
BsaI	GGTCTC	1 cut(s)	476
BsaJI	CCNNGG	3 cut(s)	214, 665, 715
BsaWI	WCCGGW	2 cut(s)	182, 704
Bsc4I	CCNNNNNNNGG	2 cut(s)	257, 746
Bse1I	ACTGG	1 cut(s)	805
Bse3DI	GCAATG	2 cut(s)	564, 898
BseDI	CCNNGG	3 cut(s)	214, 665, 715
BseGI	GGATG	1 cut(s)	335
BseLI	CCNNNNNNNGG	2 cut(s)	257, 746
BseMI	GCAATG	2 cut(s)	564, 898
BseMII	CTCAG	1 cut(s)	755
BseNI	ACTGG	1 cut(s)	805
BseRI	GAGGAG	2 cut(s)	57, 83
BseXI	GCAGC	2 cut(s)	436, 595
Bsh1236I	CGCG	1 cut(s)	778
BsiHKAI	GWGCWC	1 cut(s)	538
BsiHKCI	CYCGRG	2 cut(s)	666, 716
BsiSI	CCGG	3 cut(s)	110, 183, 705
BslI	CCNNNNNNNGG	2 cut(s)	257, 746
BsmAI	GTCTC	2 cut(s)	328, 476
Bso31I	GGTCTC	1 cut(s)	476
BsoBI	CYCGRG	2 cut(s)	666, 716
Bsp1286I	GDGCHC	1 cut(s)	538
Bsp143I	GATC	2 cut(s)	399, 615
Bsp68I	TCGCGA	1 cut(s)	778
BspACI	CCGC	3 cut(s)	415, 605, 763
BspCNI	CTCAG	1 cut(s)	754
BspFNI	CGCG	1 cut(s)	778
BspTNI	GGTCTC	1 cut(s)	476
BsrDI	GCAATG	2 cut(s)	564, 898
BsrI	ACTGG	1 cut(s)	805
BssECI	CCNNGG	3 cut(s)	214, 665, 715
BssMI	GATC	2 cut(s)	399, 615
Bst4CI	ACNGT	2 cut(s)	749, 856
BstBAI	YACGTR	1 cut(s)	811
BstC8I	GCNNGC	1 cut(s)	659
BstDEI	CTNAG	4 cut(s)	171, 646, 741, 920
BstF5I	GGATG	1 cut(s)	335
BstFNI	CGCG	1 cut(s)	778
BstKTI	GATC	2 cut(s)	402, 618
BstMAI	GTCTC	2 cut(s)	328, 476
BstMBI	GATC	2 cut(s)	399, 615
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 533, 602
BstNSI	RCATGY	3 cut(s)	391, 661, 802
BstUI	CGCG	1 cut(s)	778
BstV1I	GCAGC	2 cut(s)	436, 595
BstV2I	GAAGAC	1 cut(s)	66
BsuI	GTATCC	1 cut(s)	422
BtgZI	GCGATG	1 cut(s)	619
BtsCI	GGATG	1 cut(s)	335
BtsIMutI	CAGTG	1 cut(s)	834
BtuMI	TCGCGA	1 cut(s)	778
Cac8I	GCNNGC	1 cut(s)	659
Cfr13I	GGNCC	3 cut(s)	185, 260, 945
Csp6I	GTAC	4 cut(s)	314, 745, 802, 808
CviAII	CATG	5 cut(s)	99, 317, 388, 658, 799
CviJI	RGCY	8 cut(s)	47, 103, 355, 435, 608, 758, 850, 924
CviKI_1	RGCY	8 cut(s)	47, 103, 355, 435, 608, 758, 850, 924
CviQI	GTAC	4 cut(s)	314, 745, 802, 808
DdeI	CTNAG	4 cut(s)	171, 646, 741, 920
DpnI	GATC	2 cut(s)	401, 617
DpnII	GATC	2 cut(s)	399, 615
EciI	GGCGGA	1 cut(s)	404
Eco31I	GGTCTC	1 cut(s)	476
Eco47I	GGWCC	3 cut(s)	185, 260, 945
Eco88I	CYCGRG	2 cut(s)	666, 716
FaeI	CATG	5 cut(s)	102, 320, 391, 661, 802
FatI	CATG	5 cut(s)	98, 316, 387, 657, 798
FauI	CCCGC	1 cut(s)	770
FbaI	TGATCA	1 cut(s)	615
Fnu4HI	GCNGC	3 cut(s)	425, 606, 609
FokI	GGATG	1 cut(s)	342
Fsp4HI	GCNGC	3 cut(s)	425, 606, 609
FspBI	CTAG	1 cut(s)	207
GluI	GCNGC	3 cut(s)	425, 606, 609
HapII	CCGG	3 cut(s)	110, 183, 705
Hin1II	CATG	5 cut(s)	102, 320, 391, 661, 802
HincII	GTYRAC	1 cut(s)	673
HindII	GTYRAC	1 cut(s)	673
HindIII	AAGCTT	1 cut(s)	756
HinfI	GANTC	7 cut(s)	71, 106, 210, 222, 247, 444, 708
HpaII	CCGG	3 cut(s)	110, 183, 705
HphI	GGTGA	2 cut(s)	92, 172
Hpy166II	GTNNAC	1 cut(s)	673
Hpy188I	TCNGA	4 cut(s)	218, 568, 615, 737
Hpy188III	TCNNGA	2 cut(s)	506, 777
Hpy8I	GTNNAC	1 cut(s)	673
Hpy99I	CGWCG	1 cut(s)	496
HpyAV	CCTTC	2 cut(s)	273, 512
HpyCH4III	ACNGT	2 cut(s)	749, 856
HpyCH4IV	ACGT	1 cut(s)	810
HpyCH4V	TGCA	3 cut(s)	683, 860, 903
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 533, 602
HpyF3I	CTNAG	4 cut(s)	171, 646, 741, 920
HpySE526I	ACGT	1 cut(s)	810
Hsp92II	CATG	5 cut(s)	102, 320, 391, 661, 802
Ksp22I	TGATCA	1 cut(s)	615
Kzo9I	GATC	2 cut(s)	399, 615
LmnI	GCTCC	3 cut(s)	44, 290, 554
LpnPI	CCDG	6 cut(s)	63, 123, 196, 348, 718, 818
Lsp1109I	GCAGC	2 cut(s)	436, 595
LweI	GCATC	1 cut(s)	858
MaeI	CTAG	1 cut(s)	207
MaeII	ACGT	1 cut(s)	810
MalI	GATC	2 cut(s)	401, 617
MboI	GATC	2 cut(s)	399, 615
MboII	GAAGA	7 cut(s)	43, 66, 231, 258, 261, 368, 394
MfeI	CAATTG	1 cut(s)	580
MhlI	GDGCHC	1 cut(s)	538
MluCI	AATT	3 cut(s)	55, 428, 580
MlyI	GAGTC	2 cut(s)	80, 453
MmeI	TCCRAC	1 cut(s)	760
MseI	TTAA	4 cut(s)	159, 240, 461, 701
MslI	CAYNNNNRTG	1 cut(s)	298
MspI	CCGG	3 cut(s)	110, 183, 705
MunI	CAATTG	1 cut(s)	580
MvnI	CGCG	1 cut(s)	778
MwoI	GCNNNNNNNGC	3 cut(s)	131, 533, 602
NdeII	GATC	2 cut(s)	399, 615
NlaIII	CATG	5 cut(s)	102, 320, 391, 661, 802
NruI	TCGCGA	1 cut(s)	778
NspI	RCATGY	3 cut(s)	391, 661, 802
PaeI	GCATGC	1 cut(s)	661
PciI	ACATGT	1 cut(s)	387
PfeI	GAWTC	5 cut(s)	106, 210, 222, 247, 708
PkrI	GCNGC	3 cut(s)	426, 607, 610
PleI	GAGTC	2 cut(s)	79, 452
PpsI	GAGTC	2 cut(s)	79, 452
Ppu21I	YACGTR	1 cut(s)	811
PscI	ACATGT	1 cut(s)	387
PspPI	GGNCC	3 cut(s)	185, 260, 945
RruI	TCGCGA	1 cut(s)	778
RsaI	GTAC	4 cut(s)	315, 746, 803, 809
RsaNI	GTAC	4 cut(s)	314, 745, 802, 808
RseI	CAYNNNNRTG	1 cut(s)	298
SaqAI	TTAA	4 cut(s)	159, 240, 461, 701
SatI	GCNGC	3 cut(s)	425, 606, 609
Sau3AI	GATC	2 cut(s)	399, 615
Sau96I	GGNCC	3 cut(s)	185, 260, 945
SchI	GAGTC	2 cut(s)	80, 453
SduI	GDGCHC	1 cut(s)	538
SetI	ASST	8 cut(s)	49, 190, 742, 760, 813, 921, 926, 950
SfaNI	GCATC	1 cut(s)	858
SinI	GGWCC	3 cut(s)	185, 260, 945
SmiMI	CAYNNNNRTG	1 cut(s)	298
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
SphI	GCATGC	1 cut(s)	661
Sse9I	AATT	3 cut(s)	55, 428, 580
SsiI	CCGC	3 cut(s)	415, 605, 763
SspMI	CTAG	1 cut(s)	207
TaaI	ACNGT	2 cut(s)	749, 856
TaiI	ACGT	1 cut(s)	813
TasI	AATT	3 cut(s)	55, 428, 580
TatI	WGTACW	1 cut(s)	313
TauI	GCSGC	1 cut(s)	608
TfiI	GAWTC	5 cut(s)	106, 210, 222, 247, 708
Tru1I	TTAA	4 cut(s)	159, 240, 461, 701
Tru9I	TTAA	4 cut(s)	159, 240, 461, 701
TscAI	CASTG	1 cut(s)	834
TseI	GCWGC	2 cut(s)	424, 608
TspDTI	ATGAA	6 cut(s)	87, 333, 362, 394, 427, 619
TspRI	CASTG	1 cut(s)	834
VpaK11BI	GGWCC	3 cut(s)	185, 260, 945
XceI	RCATGY	3 cut(s)	391, 661, 802
XcmI	CCANNNNNNNNNTGG	1 cut(s)	939
XspI	CTAG	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.