AT1G12940
ERF Family

Major Facilitator Superfamily

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
4416315 .. 4418590
2276 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G12940.1

Sequence Viewer

Length: 1509 bp
ATGGAGGTCGAAGGCAAAGGAGGAGAAGCTGGAACCACCACCACAACCGCACCTCGGAGGTTCGCACTTCCGGTGGACGCGGAGAACAAAGCAACAACTTTCCGACTATTCTCAGTCGCTAAACCTCACATGAGAGCTTTCCATCTCTCATGGTTTCAATTCTTTTGCTGCTTCGTCTCCACTTTCGCAGCTCCGCCTCTCCTCCCTGTTATCCGTGAAAATCTTAACCTCACCGCCACCGACATCGGAAACGCCGGAATAGCCTCTGTCTCCGGCGCTGTTTTCGCTCGTATCGTCATGGGCACGGCATGTGATCTTTTCGGTCCACGTCTAGCCTCCGCCGCTTTGACGCTCTCCACCGCTCCCGCCGTCTATTTCACCGCCGGGATAAAGTCTCCGATCGGGTTTATCATGGTGAGATTCTTCGCCGGATTCTCTCTCGCCACTTTCGTCTCGACTCAGTTCTGGATGAGCTCCATGTTCTCTGGACCCGTCGTGGGTTCGGCTAACGGAATCGCCGCCGGGTGGGGTAACCTCGGAGGAGGCGCGACGCAGCTGATCATGCCCATCGTGTTCTCGTTGATTCGTAATATGGGAGCCACCAAGTTCACCGCGTGGAGGATCGCTTTTTTCATCCCCGGTCTCTTTCAGACTCTCTCTGCTTTCGCCGTTCTCTTGTTCGGTCAGGATCTTCCTGATGGAGATTATTGGGCGATGCATAAATCTGGAGAGAGGGAGAAAGATGATGTGGGGAAAGTGATATCTAATGGAATCAAAAACTATAGGGGATGGATAACAGCATTAGCATATGGCTATTGTTTTGGAGTAGAGCTTACCATTGACAACATCATCGCAGAATATTTCTTCGATAGATTCCATTTAAAGCTCCAGACAGCAGGGATTATAGCAGCGAGTTTTGGACTAGCCAATTTTTTCGCTAGACCTGGAGGAGGAATTTTCTCTGATTTTATGTCGAGACGGTTTGGGATGAGAGGAAGGTTGTGGGCTTGGTGGATTGTGCAAACATCAGGAGGTGTATTATGCGCATGTCTTGGCCAGATTTCTTCCTTGACAGTGTCTATAATTGTTATGCTTGTCTTCTCTGTATTCGTCCAAGCCGCTTGTGGACTTACCTTTGGCGTTGTTCCCTTTATTTCTAGAAGATCTCTTGGGGTGGTATCGGGAATGACTGGTGCGGGAGGCAATGTAGGCGCGGTCTTAACACAGTTGATATTCTTCAAAGGATCGACATACACGAGAGAGACGGGTATAACTCTAATGGGGGTAATGTCAATCGCATGTTCATTACCAATATGCTTGATTTACTTTCCGCAATGGGGAGGTATGTTTTGTGGACCCTCTTCCAAAAAAGTAACTGAAGAAGACTATTATCTCGCCGAATGGAACGATGAAGAGAAAGAAAAGAACTTACATATCGGAAGCCAAAAATTTGCGGAAACCAGCATTAGCGAAAGAGGTCGAGCCACAACGACTCATCCCCAAACTTGA

Protein Analysis

502

Amino Acids

54.26

Weight (kDa)

8.97

Isoelectric Point (pI)

32.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 51 - 407 4.3e-18 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1045
AccBSI CCGCTC 1 cut(s) 362
AccII CGCG 4 cut(s) 80, 548, 614, 1214
AclWI GGATC 3 cut(s) 629, 696, 1252
AcoI YGGCCR 1 cut(s) 1054
AcsI RAATTY 2 cut(s) 954, 1448
AcuI CTGAAG 1 cut(s) 1398
AdeI CACNNNGTG 1 cut(s) 615
AfiI CCNNNNNNNGG 6 cut(s) 54, 497, 525, 618, 950, 1337
AgsI TTSAA 2 cut(s) 158, 1240
AjiI CACGTC 1 cut(s) 329
AjnI CCWGG 1 cut(s) 943
AluBI AGCT 7 cut(s) 29, 137, 191, 474, 556, 832, 886
AluI AGCT 7 cut(s) 29, 137, 191, 474, 556, 832, 886
Alw21I GWGCWC 1 cut(s) 476
Alw26I GTCTC 7 cut(s) 181, 274, 399, 457, 647, 970, 1256
AlwI GGATC 3 cut(s) 629, 696, 1252
AoxI GGCC 1 cut(s) 1054
ApeKI GCWGC 4 cut(s) 168, 188, 553, 908
ApoI RAATTY 2 cut(s) 954, 1448
AspLEI GCGC 4 cut(s) 278, 548, 1046, 1214
AspS9I GGNCC 3 cut(s) 323, 488, 1355
AsuC2I CCSGG 3 cut(s) 385, 523, 639
AsuHPI GGTGA 4 cut(s) 223, 370, 427, 601
AvaII GGWCC 3 cut(s) 323, 488, 1355
BaeGI GKGCMC 1 cut(s) 305
BalI TGGCCA 1 cut(s) 1056
BanII GRGCYC 1 cut(s) 476
BauI CACGAG 1 cut(s) 1255
BbsI GAAGAC 2 cut(s) 1090, 1389
Bbv12I GWGCWC 1 cut(s) 476
BbvI GCAGC 4 cut(s) 155, 200, 565, 920
BccI CCATC 4 cut(s) 150, 575, 692, 783
BceAI ACGGC 3 cut(s) 321, 353, 653
BciT130I CCWGG 1 cut(s) 945
BclI TGATCA 1 cut(s) 558
BcnI CCSGG 3 cut(s) 385, 523, 639
BcoDI GTCTC 7 cut(s) 181, 274, 399, 457, 647, 970, 1256
BfaI CTAG 4 cut(s) 332, 923, 939, 1158
BfmI CTRYAG 1 cut(s) 781
BfoI RGCGCY 1 cut(s) 279
BglII AGATCT 1 cut(s) 1163
BisI GCNGC 7 cut(s) 169, 189, 342, 519, 554, 909, 1119
BlsI GCNGC 7 cut(s) 170, 190, 343, 520, 555, 910, 1120
Bme1390I CCNGG 4 cut(s) 385, 523, 639, 945
Bme18I GGWCC 3 cut(s) 323, 488, 1355
BmgBI CACGTC 1 cut(s) 329
BmgT120I GGNCC 3 cut(s) 323, 488, 1355
BmiI GGNNCC 4 cut(s) 34, 490, 598, 1357
BmrFI CCNGG 4 cut(s) 385, 523, 639, 945
BmsI GCATC 1 cut(s) 705
BpiI GAAGAC 2 cut(s) 1090, 1389
BpmI CTGGAG 3 cut(s) 747, 872, 966
BpuMI CCSGG 3 cut(s) 385, 523, 639
BsaI GGTCTC 1 cut(s) 647
BsaJI CCNNGG 3 cut(s) 53, 535, 637
BsaWI WCCGGW 1 cut(s) 70
BsaXI ACNNNNNCTCC 2 cut(s) 1191, 1221
Bsc4I CCNNNNNNNGG 6 cut(s) 54, 497, 525, 618, 950, 1337
Bse1I ACTGG 1 cut(s) 1195
Bse3DI GCAATG 2 cut(s) 1210, 1340
BseBI CCWGG 1 cut(s) 945
BseDI CCNNGG 3 cut(s) 53, 535, 637
BseGI GGATG 5 cut(s) 474, 633, 794, 993, 1495
BseLI CCNNNNNNNGG 6 cut(s) 54, 497, 525, 618, 950, 1337
BseMI GCAATG 2 cut(s) 1210, 1340
BseMII CTCAG 2 cut(s) 126, 473
BseNI ACTGG 1 cut(s) 1195
BseRI GAGGAG 4 cut(s) 36, 191, 555, 963
BseSI GKGCMC 1 cut(s) 305
BseXI GCAGC 4 cut(s) 155, 200, 565, 920
Bsh1236I CGCG 4 cut(s) 80, 548, 614, 1214
Bsh1285I CGRYCG 1 cut(s) 402
BshFI GGCC 1 cut(s) 1056
BsiEI CGRYCG 1 cut(s) 402
BsiHKAI GWGCWC 1 cut(s) 476
BsiSI CCGG 7 cut(s) 71, 255, 273, 384, 429, 522, 639
BslI CCNNNNNNNGG 6 cut(s) 54, 497, 525, 618, 950, 1337
BsmAI GTCTC 7 cut(s) 181, 274, 399, 457, 647, 970, 1256
BsmBI CGTCTC 4 cut(s) 181, 457, 970, 1256
BsnI GGCC 1 cut(s) 1056
Bso31I GGTCTC 1 cut(s) 647
Bsp1286I GDGCHC 2 cut(s) 305, 476
Bsp143I GATC 7 cut(s) 313, 399, 558, 621, 688, 1163, 1244
BspANI GGCC 1 cut(s) 1056
BspCNI CTCAG 2 cut(s) 125, 472
BspFNI CGCG 4 cut(s) 80, 548, 614, 1214
BspLI GGNNCC 4 cut(s) 34, 490, 598, 1357
BspPI GGATC 3 cut(s) 629, 696, 1252
BspTNI GGTCTC 1 cut(s) 647
BsrBI CCGCTC 1 cut(s) 362
BsrDI GCAATG 2 cut(s) 1210, 1340
BsrI ACTGG 1 cut(s) 1195
BssECI CCNNGG 3 cut(s) 53, 535, 637
BssMI GATC 7 cut(s) 313, 399, 558, 621, 688, 1163, 1244
BssSI CACGAG 1 cut(s) 1255
Bst2BI CACGAG 1 cut(s) 1255
Bst2UI CCWGG 1 cut(s) 945
Bst4CI ACNGT 3 cut(s) 981, 1075, 1227
Bst6I CTCTTC 2 cut(s) 1366, 1407
BstDEI CTNAG 2 cut(s) 112, 459
BstEII GGTNACC 1 cut(s) 530
BstENI CCTNNNNNAGG 1 cut(s) 948
BstF5I GGATG 5 cut(s) 474, 633, 794, 993, 1495
BstFNI CGCG 4 cut(s) 80, 548, 614, 1214
BstH2I RGCGCY 1 cut(s) 279
BstHHI GCGC 4 cut(s) 278, 548, 1046, 1214
BstKTI GATC 7 cut(s) 316, 402, 561, 624, 691, 1166, 1247
BstMAI GTCTC 7 cut(s) 181, 274, 399, 457, 647, 970, 1256
BstMBI GATC 7 cut(s) 313, 399, 558, 621, 688, 1163, 1244
BstMCI CGRYCG 1 cut(s) 402
BstMWI GCNNNNNNNGC 5 cut(s) 260, 284, 341, 562, 1209
BstNI CCWGG 1 cut(s) 945
BstNSI RCATGY 3 cut(s) 312, 1050, 1302
BstPI GGTNACC 1 cut(s) 530
BstSCI CCNGG 4 cut(s) 383, 521, 637, 943
BstSFI CTRYAG 1 cut(s) 781
BstSLI GKGCMC 1 cut(s) 305
BstUI CGCG 4 cut(s) 80, 548, 614, 1214
BstV1I GCAGC 4 cut(s) 155, 200, 565, 920
BstV2I GAAGAC 2 cut(s) 1090, 1389
BstX2I RGATCY 2 cut(s) 688, 1163
BstYI RGATCY 2 cut(s) 688, 1163
BsuRI GGCC 1 cut(s) 1056
BtgZI GCGATG 2 cut(s) 728, 835
BtrI CACGTC 1 cut(s) 329
BtsCI GGATG 5 cut(s) 474, 633, 794, 993, 1495
BtsIMutI CAGTG 1 cut(s) 1080
CfoI GCGC 4 cut(s) 278, 548, 1046, 1214
Cfr13I GGNCC 3 cut(s) 323, 488, 1355
CseI GACGC 3 cut(s) 86, 358, 559
CviAII CATG 9 cut(s) 130, 150, 298, 309, 412, 478, 562, 1047, 1299
DdeI CTNAG 2 cut(s) 112, 459
DpnI GATC 7 cut(s) 315, 401, 560, 623, 690, 1165, 1246
DpnII GATC 7 cut(s) 313, 399, 558, 621, 688, 1163, 1244
DraI TTTAAA 1 cut(s) 882
DraIII CACNNNGTG 1 cut(s) 615
EaeI YGGCCR 1 cut(s) 1054
Eam1104I CTCTTC 2 cut(s) 1366, 1407
EarI CTCTTC 2 cut(s) 1366, 1407
EciI GGCGGA 2 cut(s) 183, 328
Ecl136II GAGCTC 1 cut(s) 474
Eco24I GRGCYC 1 cut(s) 476
Eco31I GGTCTC 1 cut(s) 647
Eco32I GATATC 1 cut(s) 762
Eco47I GGWCC 3 cut(s) 323, 488, 1355
Eco53kI GAGCTC 1 cut(s) 474
Eco57I CTGAAG 1 cut(s) 1398
Eco91I GGTNACC 1 cut(s) 530
EcoICRI GAGCTC 1 cut(s) 474
EcoNI CCTNNNNNAGG 1 cut(s) 948
EcoO65I GGTNACC 1 cut(s) 530
EcoRII CCWGG 1 cut(s) 943
EcoRV GATATC 1 cut(s) 762
EcoT22I ATGCAT 1 cut(s) 720
EcoT38I GRGCYC 1 cut(s) 476
Esp3I CGTCTC 4 cut(s) 181, 457, 970, 1256
FaeI CATG 9 cut(s) 133, 153, 301, 312, 415, 481, 565, 1050, 1302
FatI CATG 9 cut(s) 129, 149, 297, 308, 411, 477, 561, 1046, 1298
FauI CCCGC 2 cut(s) 373, 1189
FauNDI CATATG 1 cut(s) 808
FbaI TGATCA 1 cut(s) 558
Fnu4HI GCNGC 7 cut(s) 169, 189, 342, 519, 554, 909, 1119
FokI GGATG 5 cut(s) 481, 620, 801, 1000, 1482
FriOI GRGCYC 1 cut(s) 476
Fsp4HI GCNGC 7 cut(s) 169, 189, 342, 519, 554, 909, 1119
FspAI RTGCGCAY 1 cut(s) 1045
FspBI CTAG 4 cut(s) 332, 923, 939, 1158
FspI TGCGCA 1 cut(s) 1045
GlaI GCGC 4 cut(s) 277, 547, 1045, 1213
GluI GCNGC 7 cut(s) 169, 189, 342, 519, 554, 909, 1119
GsuI CTGGAG 3 cut(s) 747, 872, 966
HaeII RGCGCY 1 cut(s) 279
HaeIII GGCC 1 cut(s) 1056
HapII CCGG 7 cut(s) 71, 255, 273, 384, 429, 522, 639
HgaI GACGC 3 cut(s) 86, 358, 559
HhaI GCGC 4 cut(s) 278, 548, 1046, 1214
Hin1II CATG 9 cut(s) 133, 153, 301, 312, 415, 481, 565, 1050, 1302
Hin6I GCGC 4 cut(s) 276, 546, 1044, 1212
HinP1I GCGC 4 cut(s) 276, 546, 1044, 1212
HinfI GANTC 9 cut(s) 420, 432, 457, 513, 583, 652, 771, 873, 1492
HpaII CCGG 7 cut(s) 71, 255, 273, 384, 429, 522, 639
HphI GGTGA 4 cut(s) 223, 370, 427, 601
Hpy166II GTNNAC 5 cut(s) 76, 326, 609, 1127, 1355
Hpy188I TCNGA 8 cut(s) 57, 104, 248, 399, 539, 651, 964, 1439
Hpy8I GTNNAC 5 cut(s) 76, 326, 609, 1127, 1355
Hpy99I CGWCG 2 cut(s) 497, 553
HpyAV CCTTC 2 cut(s) 5, 990
HpyCH4III ACNGT 3 cut(s) 981, 1075, 1227
HpyCH4IV ACGT 1 cut(s) 328
HpyCH4V TGCA 2 cut(s) 718, 1021
HpyF10VI GCNNNNNNNGC 5 cut(s) 260, 284, 341, 562, 1209
HpyF3I CTNAG 2 cut(s) 112, 459
HpySE526I ACGT 1 cut(s) 328
Hsp92II CATG 9 cut(s) 133, 153, 301, 312, 415, 481, 565, 1050, 1302
HspAI GCGC 4 cut(s) 276, 546, 1044, 1212
Ksp22I TGATCA 1 cut(s) 558
Kzo9I GATC 7 cut(s) 313, 399, 558, 621, 688, 1163, 1244
LmnI GCTCC 5 cut(s) 196, 367, 479, 596, 891
Lsp1109I GCAGC 4 cut(s) 155, 200, 565, 920
LweI GCATC 1 cut(s) 705
MaeI CTAG 4 cut(s) 332, 923, 939, 1158
MaeII ACGT 1 cut(s) 328
MaeIII GTNAC 2 cut(s) 530, 1372
MalI GATC 7 cut(s) 315, 401, 560, 623, 690, 1165, 1246
MbiI CCGCTC 1 cut(s) 362
MboI GATC 7 cut(s) 313, 399, 558, 621, 688, 1163, 1244
MflI RGATCY 2 cut(s) 688, 1163
MhlI GDGCHC 2 cut(s) 305, 476
MlsI TGGCCA 1 cut(s) 1056
MluCI AATT 5 cut(s) 158, 928, 954, 1083, 1448
MluNI TGGCCA 1 cut(s) 1056
MlyI GAGTC 3 cut(s) 451, 646, 1486
MmeI TCCRAC 1 cut(s) 127
Mox20I TGGCCA 1 cut(s) 1056
Mph1103I ATGCAT 1 cut(s) 720
MscI TGGCCA 1 cut(s) 1056
MseI TTAA 3 cut(s) 225, 881, 1220
Msp20I TGGCCA 1 cut(s) 1056
MspA1I CMGCKG 1 cut(s) 556
MspI CCGG 7 cut(s) 71, 255, 273, 384, 429, 522, 639
MspR9I CCNGG 4 cut(s) 385, 523, 639, 945
MvaI CCWGG 1 cut(s) 945
MvnI CGCG 4 cut(s) 80, 548, 614, 1214
MwoI GCNNNNNNNGC 5 cut(s) 260, 284, 341, 562, 1209
NciI CCSGG 3 cut(s) 385, 523, 639
NdeI CATATG 1 cut(s) 808
NdeII GATC 7 cut(s) 313, 399, 558, 621, 688, 1163, 1244
NlaIII CATG 9 cut(s) 133, 153, 301, 312, 415, 481, 565, 1050, 1302
NlaIV GGNNCC 4 cut(s) 34, 490, 598, 1357
NsbI TGCGCA 1 cut(s) 1045
NsiI ATGCAT 1 cut(s) 720
NspI RCATGY 3 cut(s) 312, 1050, 1302
PcsI WCGNNNNNNNCGW 3 cut(s) 291, 447, 1253
PfeI GAWTC 6 cut(s) 420, 432, 513, 583, 771, 873
PflFI GACNNNGTC 1 cut(s) 1075
PkrI GCNGC 7 cut(s) 170, 190, 343, 520, 555, 910, 1120
Ple19I CGATCG 1 cut(s) 402
PleI GAGTC 3 cut(s) 451, 646, 1486
PpsI GAGTC 3 cut(s) 451, 646, 1486
Psp124BI GAGCTC 1 cut(s) 476
Psp6I CCWGG 1 cut(s) 943
PspEI GGTNACC 1 cut(s) 530
PspGI CCWGG 1 cut(s) 943
PspN4I GGNNCC 4 cut(s) 34, 490, 598, 1357
PspPI GGNCC 3 cut(s) 323, 488, 1355
PsuI RGATCY 2 cut(s) 688, 1163
PsyI GACNNNGTC 1 cut(s) 1075
PvuI CGATCG 1 cut(s) 402
PvuII CAGCTG 1 cut(s) 556
SacI GAGCTC 1 cut(s) 476
SaqAI TTAA 3 cut(s) 225, 881, 1220
SatI GCNGC 7 cut(s) 169, 189, 342, 519, 554, 909, 1119
Sau3AI GATC 7 cut(s) 313, 399, 558, 621, 688, 1163, 1244
Sau96I GGNCC 3 cut(s) 323, 488, 1355
SchI GAGTC 3 cut(s) 451, 646, 1486
ScrFI CCNGG 4 cut(s) 385, 523, 639, 945
SduI GDGCHC 2 cut(s) 305, 476
SfaNI GCATC 1 cut(s) 705
SfcI CTRYAG 1 cut(s) 781
SinI GGWCC 3 cut(s) 323, 488, 1355
Sse9I AATT 5 cut(s) 158, 928, 954, 1083, 1448
SspI AATATT 1 cut(s) 860
SspMI CTAG 4 cut(s) 332, 923, 939, 1158
SstI GAGCTC 1 cut(s) 476
StyD4I CCNGG 4 cut(s) 383, 521, 637, 943
TaaI ACNGT 3 cut(s) 981, 1075, 1227
TaiI ACGT 1 cut(s) 331
TaqI TCGA 6 cut(s) 9, 455, 867, 974, 1247, 1480
TaqII GACCGA 2 cut(s) 311, 671
TasI AATT 5 cut(s) 158, 928, 954, 1083, 1448
TauI GCSGC 3 cut(s) 344, 521, 1121
TfiI GAWTC 6 cut(s) 420, 432, 513, 583, 771, 873
Tru1I TTAA 3 cut(s) 225, 881, 1220
Tru9I TTAA 3 cut(s) 225, 881, 1220
TscAI CASTG 1 cut(s) 1080
TseI GCWGC 4 cut(s) 168, 188, 553, 908
TspDTI ATGAA 3 cut(s) 622, 1293, 1425
TspGWI ACGGA 2 cut(s) 203, 525
TspRI CASTG 1 cut(s) 1080
Tth111I GACNNNGTC 1 cut(s) 1075
VpaK11BI GGWCC 3 cut(s) 323, 488, 1355
XagI CCTNNNNNAGG 1 cut(s) 948
XapI RAATTY 2 cut(s) 954, 1448
XbaI TCTAGA 1 cut(s) 1157
XceI RCATGY 3 cut(s) 312, 1050, 1302
XcmI CCANNNNNNNNNTGG 1 cut(s) 1121
XspI CTAG 4 cut(s) 332, 923, 939, 1158
Zsp2I ATGCAT 1 cut(s) 720
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.