RchiOBHm_Chr4g0433241

high affinity nitrate transporter

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
57418596 .. 57420455
1860 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40176

Sequence Viewer

Length: 1509 bp
ATGGAATTCCAGTCCGAGTCCCCAAAGTTTGCTCTGACTGTGGACTCTGATCACAAGGCAACAGAGTTCAAAATCTTCTCCATAGCCAAACCGCACATGCGAGCCTTTCACTTAGCTTGGTTCTCATACTTCTCATGCTTCCTCACCACTTTTGCCGCAGCACCTCTACTCCCCGTCATCCGGGACAACCTCAACCTCACCACCACCGACATCGGCAACGCCGGAATCGCTTCTGTCTCCGGCGCAGTCTTTGCCCGAATAGCAATGGGGACTCTCTCCGACTTATTCGGACCGCGTCTCGCCTCTGCCTCACTCCTACTCCTCACTGCACCAGCTGTCTTCTTATTCTCAATGGCCTCATCCCCCATTTCTTTTCTCTTATTGCGTTTTTGCGTCGGCATCTCTTTGGCCAACTTTGTTCCAACCATGTTCTGGATGAGCTCTATGTTTTCGCCTCCGGTGGTCGGCACGGCAAATGGCTTCGCCGGCGGTTGGGGAAACTTTGGTGGTGGTGCGACGCAGCTGATCATGCCACTTGTGTTTGGCCTCATTCAACATAACGTTGGCGCTGCCAAGTTCACTGCTTGGCGAATAGCGTTCCAAATCCCTGCCGTGTTTCAGGTGCTCTCCGCATTTGCCATTTTGCTGTTCGGGCAGGATATGCCGGACGGTAACTTCCACCGGTTGGAGAAGTCCGGTGACAAACCGAAAGACAAGTTTTCGACTGTTTTCTGGCATGGGGTTAAAAATTACAGAGGGTGGATTCTGGCATTGACTTATGGCTATTGCTTTGGGGTTGAGCTCACTGTGGACAATATCATAGCTGAGTACTTTTACGACAGATTCAATCTCAAGCTTCACACTGCAGGGATTATAGCGGCGACTTTCGGGTTGGCCAATATTGTTTCTAGACCGACAGGAGGGGTTTTATCAGATTTGATGGCGAGGAGGTTTGGGATGAGGGGGAGGCTGTGGACTCTGTGGGTGCTGCAAACTTTGGGGGGTGTGTTCTGTGTGATTCTTGGGAGAGTTGGTTCTCTGAAGGCTTCTATTGGTGTCATGGTTTTGTTCTCCTTGTGTTGCCAAAGTGCTTGTGGGCTTACATATGGAGTGGTACCTTTTGTTTCCAGAAGGTCACTAGGTGTCATCTCTGGTATGACAGGGGGTGGTGGAAGCTTGGGTGCAGTTCTGACCCAACTTATTTTCTTCAAAGGAACCAAGTATTCGAAAGAAACAGGGATTACTCTAATGGGGGTCATGATCATGTGCTGCACTCTCCCAATGACTCTAATACATTTCCCGCAATGGGGTGGAATGCTAAGTGGTCCATCATCTATAAACACTGCCACTGAAGAGGAGTACTACATGTCCGAATGGACTTCAGTGGAGAAGGAGAAAGGTTTTCATTGTGCAAGTGTGAAATTCGCTGAGAACAGCAGAAGCGAAAGGGGAAAGTCTGACTCTTTAACCAGGACCTCTGATGAGGTTTCACCAACGGTACATGTTTAA

Protein Analysis

502

Amino Acids

54.51

Weight (kDa)

9.03

Isoelectric Point (pI)

37.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 40 - 397 4.6e-26 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1114
AccB1I GGYRCC 1 cut(s) 1114
AccB7I CCANNNNNTGG 2 cut(s) 432, 685
AccII CGCG 1 cut(s) 295
AciI CCGC 7 cut(s) 92, 156, 293, 489, 630, 878, 1301
AclI AACGTT 1 cut(s) 561
AcoI YGGCCR 2 cut(s) 408, 894
AcsI RAATTY 2 cut(s) 5, 1421
AcuI CTGAAG 3 cut(s) 1061, 1365, 1371
AdeI CACNNNGTG 1 cut(s) 1142
AfaI GTAC 4 cut(s) 830, 1116, 1361, 1500
AfiI CCNNNNNNNGG 8 cut(s) 180, 432, 464, 492, 685, 920, 1306, 1307
AflIII ACRYGT 2 cut(s) 1365, 1501
AgeI ACCGGT 1 cut(s) 681
AgsI TTSAA 4 cut(s) 70, 554, 847, 1210
AjnI CCWGG 1 cut(s) 1469
AloI GAACNNNNNNTCC 2 cut(s) 1018, 1050
AluBI AGCT 8 cut(s) 116, 335, 441, 523, 802, 824, 856, 1176
AluI AGCT 8 cut(s) 116, 335, 441, 523, 802, 824, 856, 1176
Alw21I GWGCWC 3 cut(s) 443, 627, 804
Alw26I GTCTC 2 cut(s) 241, 302
AoxI GGCC 4 cut(s) 354, 408, 544, 894
ApeKI GCWGC 5 cut(s) 158, 520, 569, 988, 1269
ApoI RAATTY 2 cut(s) 5, 1421
AsiGI ACCGGT 1 cut(s) 681
Asp700I GAANNNNTTC 1 cut(s) 229
Asp718I GGTACC 1 cut(s) 1114
AspLEI GCGC 2 cut(s) 245, 569
AspS9I GGNCC 3 cut(s) 290, 1325, 1473
AsuC2I CCSGG 1 cut(s) 182
AsuHPI GGTGA 4 cut(s) 136, 190, 710, 1482
AsuII TTCGAA 1 cut(s) 1226
AvaII GGWCC 3 cut(s) 290, 1325, 1473
BalI TGGCCA 2 cut(s) 410, 896
BanI GGYRCC 1 cut(s) 1114
BanII GRGCYC 2 cut(s) 443, 804
BbsI GAAGAC 1 cut(s) 331
Bbv12I GWGCWC 3 cut(s) 443, 627, 804
BbvI GCAGC 5 cut(s) 170, 532, 556, 975, 1256
BccI CCATC 2 cut(s) 934, 1336
BceAI ACGGC 2 cut(s) 486, 596
BciT130I CCWGG 1 cut(s) 1471
BclI TGATCA 3 cut(s) 49, 525, 1260
BcnI CCSGG 1 cut(s) 182
BcoDI GTCTC 2 cut(s) 241, 302
BfaI CTAG 2 cut(s) 909, 1139
BfmI CTRYAG 1 cut(s) 864
BfoI RGCGCY 1 cut(s) 570
BisI GCNGC 7 cut(s) 156, 159, 521, 570, 879, 989, 1270
BlsI GCNGC 7 cut(s) 157, 160, 522, 571, 880, 990, 1271
BmcAI AGTACT 2 cut(s) 830, 1361
Bme1390I CCNGG 2 cut(s) 182, 1471
Bme18I GGWCC 3 cut(s) 290, 1325, 1473
BmgT120I GGNCC 3 cut(s) 290, 1325, 1473
BmiI GGNNCC 2 cut(s) 1116, 1216
BmrFI CCNGG 2 cut(s) 182, 1471
BmsI GCATC 1 cut(s) 408
BpiI GAAGAC 1 cut(s) 331
Bpu14I TTCGAA 1 cut(s) 1226
BpuEI CTTGAG 1 cut(s) 836
BpuMI CCSGG 1 cut(s) 182
BsaWI WCCGGW 3 cut(s) 457, 681, 695
BsaXI ACNNNNNCTCC 6 cut(s) 153, 183, 303, 333, 1018, 1048
Bsc4I CCNNNNNNNGG 8 cut(s) 180, 432, 464, 492, 685, 920, 1306, 1307
Bse118I RCCGGY 2 cut(s) 485, 681
Bse1I ACTGG 1 cut(s) 10
Bse3DI GCAATG 2 cut(s) 270, 1310
BseBI CCWGG 1 cut(s) 1471
BseGI GGATG 4 cut(s) 177, 359, 441, 963
BseLI CCNNNNNNNGG 8 cut(s) 180, 432, 464, 492, 685, 920, 1306, 1307
BseMI GCAATG 2 cut(s) 270, 1310
BseMII CTCAG 2 cut(s) 816, 1419
BseNI ACTGG 1 cut(s) 10
BseRI GAGGAG 3 cut(s) 311, 961, 1370
BseXI GCAGC 5 cut(s) 170, 532, 556, 975, 1256
BsgI GTGCAG 3 cut(s) 312, 1203, 1255
Bsh1236I CGCG 1 cut(s) 295
BshFI GGCC 4 cut(s) 356, 410, 546, 896
BshNI GGYRCC 1 cut(s) 1114
BshTI ACCGGT 1 cut(s) 681
BsiHKAI GWGCWC 3 cut(s) 443, 627, 804
BsiSI CCGG 8 cut(s) 181, 222, 240, 458, 486, 665, 682, 696
BslFI GGGAC 3 cut(s) 4, 197, 283
BslI CCNNNNNNNGG 8 cut(s) 180, 432, 464, 492, 685, 920, 1306, 1307
BsmAI GTCTC 2 cut(s) 241, 302
BsmBI CGTCTC 1 cut(s) 302
BsmFI GGGAC 3 cut(s) 4, 197, 283
BsmI GAATGC 1 cut(s) 1320
BsnI GGCC 4 cut(s) 356, 410, 546, 896
Bsp119I TTCGAA 1 cut(s) 1226
Bsp1286I GDGCHC 3 cut(s) 443, 627, 804
Bsp143I GATC 3 cut(s) 49, 525, 1260
BspACI CCGC 7 cut(s) 92, 156, 293, 489, 630, 878, 1301
BspANI GGCC 4 cut(s) 356, 410, 546, 896
BspCNI CTCAG 2 cut(s) 817, 1420
BspFNI CGCG 1 cut(s) 295
BspHI TCATGA 1 cut(s) 1257
BspLI GGNNCC 2 cut(s) 1116, 1216
BspMAI CTGCAG 1 cut(s) 868
BspT104I TTCGAA 1 cut(s) 1226
BspT107I GGYRCC 1 cut(s) 1114
BsrDI GCAATG 2 cut(s) 270, 1310
BsrFI RCCGGY 2 cut(s) 485, 681
BsrI ACTGG 1 cut(s) 10
BssAI RCCGGY 2 cut(s) 485, 681
BssMI GATC 3 cut(s) 49, 525, 1260
Bst2UI CCWGG 1 cut(s) 1471
Bst4CI ACNGT 5 cut(s) 40, 671, 727, 808, 1498
Bst6I CTCTTC 1 cut(s) 1347
BstAPI GCANNNNNTGC 2 cut(s) 251, 661
BstBI TTCGAA 1 cut(s) 1226
BstC8I GCNNGC 2 cut(s) 102, 487
BstDEI CTNAG 4 cut(s) 112, 825, 1319, 1428
BstF5I GGATG 4 cut(s) 177, 359, 441, 963
BstFNI CGCG 1 cut(s) 295
BstH2I RGCGCY 1 cut(s) 570
BstHHI GCGC 2 cut(s) 245, 569
BstKTI GATC 3 cut(s) 52, 528, 1263
BstMAI GTCTC 2 cut(s) 241, 302
BstMBI GATC 3 cut(s) 49, 525, 1260
BstMWI GCNNNNNNNGC 7 cut(s) 227, 251, 260, 486, 529, 652, 661
BstNI CCWGG 1 cut(s) 1471
BstNSI RCATGY 3 cut(s) 100, 1369, 1505
BstSCI CCNGG 2 cut(s) 180, 1469
BstSFI CTRYAG 1 cut(s) 864
BstUI CGCG 1 cut(s) 295
BstV1I GCAGC 5 cut(s) 170, 532, 556, 975, 1256
BstV2I GAAGAC 1 cut(s) 331
BsuRI GGCC 4 cut(s) 356, 410, 546, 896
BtsCI GGATG 4 cut(s) 177, 359, 441, 963
BtsI GCAGTG 4 cut(s) 324, 579, 861, 1341
BtsIMutI CAGTG 7 cut(s) 324, 579, 804, 861, 1341, 1347, 1389
Cac8I GCNNGC 2 cut(s) 102, 487
CciI TCATGA 1 cut(s) 1257
CfoI GCGC 2 cut(s) 245, 569
Cfr10I RCCGGY 2 cut(s) 485, 681
Cfr13I GGNCC 3 cut(s) 290, 1325, 1473
CpoI CGGWCCG 1 cut(s) 290
CseI GACGC 3 cut(s) 284, 382, 526
Csp6I GTAC 4 cut(s) 829, 1115, 1360, 1499
CspAI ACCGGT 1 cut(s) 681
CspI CGGWCCG 1 cut(s) 290
CviQI GTAC 4 cut(s) 829, 1115, 1360, 1499
DdeI CTNAG 4 cut(s) 112, 825, 1319, 1428
DpnI GATC 3 cut(s) 51, 527, 1262
DpnII GATC 3 cut(s) 49, 525, 1260
DraIII CACNNNGTG 1 cut(s) 1142
EaeI YGGCCR 2 cut(s) 408, 894
Eam1104I CTCTTC 1 cut(s) 1347
EarI CTCTTC 1 cut(s) 1347
Ecl136II GAGCTC 2 cut(s) 441, 802
Eco24I GRGCYC 2 cut(s) 443, 804
Eco47I GGWCC 3 cut(s) 290, 1325, 1473
Eco53kI GAGCTC 2 cut(s) 441, 802
Eco57I CTGAAG 3 cut(s) 1061, 1365, 1371
EcoICRI GAGCTC 2 cut(s) 441, 802
EcoO109I RGGNCCY 1 cut(s) 1473
EcoRI GAATTC 1 cut(s) 5
EcoRII CCWGG 1 cut(s) 1469
EcoT38I GRGCYC 2 cut(s) 443, 804
Esp3I CGTCTC 1 cut(s) 302
FaqI GGGAC 3 cut(s) 4, 197, 283
FauI CCCGC 1 cut(s) 1308
FauNDI CATATG 1 cut(s) 1105
FbaI TGATCA 3 cut(s) 49, 525, 1260
Fnu4HI GCNGC 7 cut(s) 156, 159, 521, 570, 879, 989, 1270
FokI GGATG 4 cut(s) 164, 346, 448, 970
FriOI GRGCYC 2 cut(s) 443, 804
Fsp4HI GCNGC 7 cut(s) 156, 159, 521, 570, 879, 989, 1270
FspBI CTAG 2 cut(s) 909, 1139
GlaI GCGC 2 cut(s) 244, 568
GluI GCNGC 7 cut(s) 156, 159, 521, 570, 879, 989, 1270
HaeII RGCGCY 1 cut(s) 570
HaeIII GGCC 4 cut(s) 356, 410, 546, 896
HapII CCGG 8 cut(s) 181, 222, 240, 458, 486, 665, 682, 696
HgaI GACGC 3 cut(s) 284, 382, 526
HhaI GCGC 2 cut(s) 245, 569
Hin6I GCGC 2 cut(s) 243, 567
HinP1I GCGC 2 cut(s) 243, 567
HindIII AAGCTT 2 cut(s) 854, 1174
HpaII CCGG 8 cut(s) 181, 222, 240, 458, 486, 665, 682, 696
HphI GGTGA 4 cut(s) 136, 190, 710, 1482
Hpy166II GTNNAC 4 cut(s) 43, 579, 811, 975
Hpy188III TCNNGA 4 cut(s) 433, 909, 1128, 1258
Hpy8I GTNNAC 4 cut(s) 43, 579, 811, 975
Hpy99I CGWCG 2 cut(s) 398, 520
HpyAV CCTTC 3 cut(s) 1036, 1125, 1384
HpyCH4III ACNGT 5 cut(s) 40, 671, 727, 808, 1498
HpyCH4IV ACGT 1 cut(s) 561
HpyCH4V TGCA 6 cut(s) 329, 866, 991, 1184, 1272, 1412
HpyF10VI GCNNNNNNNGC 7 cut(s) 227, 251, 260, 486, 529, 652, 661
HpyF3I CTNAG 4 cut(s) 112, 825, 1319, 1428
HpySE526I ACGT 1 cut(s) 561
HspAI GCGC 2 cut(s) 243, 567
KpnI GGTACC 1 cut(s) 1118
KroI GCCGGC 1 cut(s) 485
KroNI GCCGGC 1 cut(s) 487
Ksp22I TGATCA 3 cut(s) 49, 525, 1260
Kzo9I GATC 3 cut(s) 49, 525, 1260
Lsp1109I GCAGC 5 cut(s) 170, 532, 556, 975, 1256
LweI GCATC 1 cut(s) 408
MaeI CTAG 2 cut(s) 909, 1139
MaeII ACGT 1 cut(s) 561
MaeIII GTNAC 3 cut(s) 671, 698, 1134
MalI GATC 3 cut(s) 51, 527, 1262
MboI GATC 3 cut(s) 49, 525, 1260
MboII GAAGA 4 cut(s) 67, 331, 1198, 1364
MhlI GDGCHC 3 cut(s) 443, 627, 804
MlsI TGGCCA 2 cut(s) 410, 896
MluCI AATT 3 cut(s) 5, 748, 1421
MluNI TGGCCA 2 cut(s) 410, 896
MlyI GAGTC 6 cut(s) 26, 38, 265, 970, 1279, 1454
MmeI TCCRAC 3 cut(s) 303, 446, 666
Mox20I TGGCCA 2 cut(s) 410, 896
MreI CGCCGGCG 1 cut(s) 485
MroNI GCCGGC 1 cut(s) 485
MroXI GAANNNNTTC 1 cut(s) 229
MscI TGGCCA 2 cut(s) 410, 896
MseI TTAA 3 cut(s) 744, 1466, 1507
MslI CAYNNNNRTG 1 cut(s) 1262
Msp20I TGGCCA 2 cut(s) 410, 896
MspA1I CMGCKG 2 cut(s) 335, 523
MspI CCGG 8 cut(s) 181, 222, 240, 458, 486, 665, 682, 696
MspR9I CCNGG 2 cut(s) 182, 1471
Mva1269I GAATGC 1 cut(s) 1320
MvaI CCWGG 1 cut(s) 1471
MvnI CGCG 1 cut(s) 295
MwoI GCNNNNNNNGC 7 cut(s) 227, 251, 260, 486, 529, 652, 661
NaeI GCCGGC 1 cut(s) 487
NciI CCSGG 1 cut(s) 182
NdeI CATATG 1 cut(s) 1105
NdeII GATC 3 cut(s) 49, 525, 1260
NgoMIV GCCGGC 1 cut(s) 485
NlaIV GGNNCC 2 cut(s) 1116, 1216
NmuCI GTSAC 2 cut(s) 698, 1134
NspI RCATGY 3 cut(s) 100, 1369, 1505
NspV TTCGAA 1 cut(s) 1226
PagI TCATGA 1 cut(s) 1257
PciI ACATGT 2 cut(s) 1365, 1501
PctI GAATGC 1 cut(s) 1320
PdiI GCCGGC 1 cut(s) 487
PdmI GAANNNNTTC 1 cut(s) 229
PfeI GAWTC 4 cut(s) 225, 763, 843, 1018
PflFI GACNNNGTC 1 cut(s) 294
PflMI CCANNNNNTGG 2 cut(s) 432, 685
PfoI TCCNGGA 1 cut(s) 180
PinAI ACCGGT 1 cut(s) 681
PkrI GCNGC 7 cut(s) 157, 160, 522, 571, 880, 990, 1271
PleI GAGTC 6 cut(s) 25, 38, 265, 970, 1279, 1454
PpsI GAGTC 6 cut(s) 25, 38, 265, 970, 1279, 1454
PpuMI RGGWCCY 1 cut(s) 1473
PscI ACATGT 2 cut(s) 1365, 1501
Psp124BI GAGCTC 2 cut(s) 443, 804
Psp1406I AACGTT 1 cut(s) 561
Psp5II RGGWCCY 1 cut(s) 1473
Psp6I CCWGG 1 cut(s) 1469
PspGI CCWGG 1 cut(s) 1469
PspN4I GGNNCC 2 cut(s) 1116, 1216
PspPI GGNCC 3 cut(s) 290, 1325, 1473
PspPPI RGGWCCY 1 cut(s) 1473
PstI CTGCAG 1 cut(s) 868
PsyI GACNNNGTC 1 cut(s) 294
PvuII CAGCTG 2 cut(s) 335, 523
RsaI GTAC 4 cut(s) 830, 1116, 1361, 1500
RsaNI GTAC 4 cut(s) 829, 1115, 1360, 1499
RseI CAYNNNNRTG 1 cut(s) 1262
Rsr2I CGGWCCG 1 cut(s) 290
RsrII CGGWCCG 1 cut(s) 290
SacI GAGCTC 2 cut(s) 443, 804
SaqAI TTAA 3 cut(s) 744, 1466, 1507
SatI GCNGC 7 cut(s) 156, 159, 521, 570, 879, 989, 1270
Sau3AI GATC 3 cut(s) 49, 525, 1260
Sau96I GGNCC 3 cut(s) 290, 1325, 1473
ScaI AGTACT 2 cut(s) 830, 1361
SchI GAGTC 6 cut(s) 26, 38, 265, 970, 1279, 1454
ScrFI CCNGG 2 cut(s) 182, 1471
SduI GDGCHC 3 cut(s) 443, 627, 804
SfaNI GCATC 1 cut(s) 408
SfcI CTRYAG 1 cut(s) 864
SfuI TTCGAA 1 cut(s) 1226
SgrAI CRCCGGYG 1 cut(s) 485
SinI GGWCC 3 cut(s) 290, 1325, 1473
SmiMI CAYNNNNRTG 1 cut(s) 1262
SmlI CTYRAG 1 cut(s) 851
SmoI CTYRAG 1 cut(s) 851
Sse9I AATT 3 cut(s) 5, 748, 1421
SsiI CCGC 7 cut(s) 92, 156, 293, 489, 630, 878, 1301
SspI AATATT 1 cut(s) 901
SspMI CTAG 2 cut(s) 909, 1139
SstI GAGCTC 2 cut(s) 443, 804
StyD4I CCNGG 2 cut(s) 180, 1469
TaaI ACNGT 5 cut(s) 40, 671, 727, 808, 1498
TaiI ACGT 1 cut(s) 564
TaqI TCGA 2 cut(s) 722, 1226
TaqII GACCGA 1 cut(s) 928
TasI AATT 3 cut(s) 5, 748, 1421
TatI WGTACW 2 cut(s) 828, 1359
TauI GCSGC 2 cut(s) 158, 881
TfiI GAWTC 4 cut(s) 225, 763, 843, 1018
Tru1I TTAA 3 cut(s) 744, 1466, 1507
Tru9I TTAA 3 cut(s) 744, 1466, 1507
TscAI CASTG 7 cut(s) 331, 586, 811, 868, 1348, 1354, 1389
TseFI GTSAC 2 cut(s) 698, 1134
TseI GCWGC 5 cut(s) 158, 520, 569, 988, 1269
Tsp45I GTSAC 2 cut(s) 698, 1134
TspDTI ATGAA 1 cut(s) 1394
TspRI CASTG 7 cut(s) 331, 586, 811, 868, 1348, 1354, 1389
Tth111I GACNNNGTC 1 cut(s) 294
Van91I CCANNNNNTGG 2 cut(s) 432, 685
VpaK11BI GGWCC 3 cut(s) 290, 1325, 1473
XapI RAATTY 2 cut(s) 5, 1421
XbaI TCTAGA 1 cut(s) 908
XceI RCATGY 3 cut(s) 100, 1369, 1505
XcmI CCANNNNNNNNNTGG 2 cut(s) 429, 1091
XmnI GAANNNNTTC 1 cut(s) 229
XspI CTAG 2 cut(s) 909, 1139
ZrmI AGTACT 2 cut(s) 830, 1361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.