Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0005098

Physical Location & Seq

Genomic Coordinates Reverse (-)

63427096 .. 63427932

Gene Structure 837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG321800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGAATTCCAGTCCGAGTCCCCAAAGTTTGCTCTGCCTGTGGACTCTGATCACAAGGCAACAGAGTTCAAAATCTTCTCCATAGCCAAACCGCACATGCGAGCCTTTCACTTAGCTTGGTTCTCATACTTCTCATGCTTCCTCACCACTTTTGCCGCAGCACCTCTACTCCCCGTAATCCGGGACAACCTCAACCTCACCACCACCGACATCGGCAACGCCGGAATCGCTTCTGTCTCCGGCGCAGTCTTTGCCCGAATAGCAATGGGGACTCTCTCCGACTTATTCGGACCGCGTCTCGCCTCTGCCTCACTCCTACTCCTCACTGCACCAGCTGTCTTCTTATTCTCAATGGCCTCATCCCCCATTTCTTTTCTCTTCTTGCGTTTTTGCGTCGGCATCTCTTTGGCCAACTTTGTTCCAACCATGTTCTGGATGAGCTCTATGTTTTGGCCTCCGGTGGTCGGCACGGCAAATGGCTTCGCCGGCGGTTGGGGAAACTTTGGTGGTGGTGCGACGCAGCTGATCATGCCACTTGTGTTTGGCCTCATTCAACATAACGTTGGCGCTGCCAAGTTCACTGCTTGGCGAATAGCGTTCCAAATCCCTGCCGTGTTTCAGGTGCTCTCCGCATTTGCGATTTTGCTGTTCGGGCAGGATATGCCGGACGGTAACTTCCACCGGTTGGAGAAGTCCGGTGACAAACCGAAAGACAAGTTTTCGACTGTTTTCTGGCATGGGGTTAAAAATTACAGAGGGTGGATTCTGGCATTGACTTATGGCTATTGCTTTGGGGTTGAGCTCACTGTGGACAATATCATAGCTGAGTACTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0009705 GO:0009987 GO:0010035 GO:0010167 GO:0015075 GO:0015103 GO:0015112 GO:0015318 GO:0015698 GO:0015706 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0070887 GO:0071229 GO:0071241 GO:0071249 GO:0071705 GO:0071944 GO:0098588 GO:0098656 GO:0098805 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

MFS_1

Protein Analysis

278

Amino Acids

30.51

Weight (kDa)

8.44

Isoelectric Point (pI)

29.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	40 - 265	4.7e-20	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12940
fragaria_vesca	FvH4_4g25770 FvH4_4g25780
malus_domestica	MD13G1096700.v1.1
prunus_persica	Prupe.1G249000_v2.0.a1
pyrus_communis	pycom13g08430
rosa_chinensis	RchiOBHm_Chr2g0144671 RchiOBHm_Chr4g0433231 RchiOBHm_Chr4g0433241
rosa_laevigata	RLG00000006772 RLG00000006773 RLG00000020099
rosa_multiflora	Rmu_sc0000957.1_g000005 Rmu_sc0001623.1_g000001 Rmu_ssc0000295.1_g000002
rosa_roxburghii	Rroxscaffold_5G00374770 Rroxscaffold_5G00374790
rosa_rugosa	Rorug02G0388600 Rorug04G0267000 Rorug04G0267100
rosa_samantha	Rh2BG450900 Rh2DG460900 Rh4AG321600 Rh4AG321800 Rh4BG328700 Rh4CG344100 Rh4DG325400 Rh4DG325900
rosa_wichuraiana	Rw2G036030 Rw4G027850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	432, 685
AccII	CGCG	1 cut(s)	295
AciI	CCGC	5 cut(s)	92, 156, 293, 489, 630
AclI	AACGTT	1 cut(s)	561
AcoI	YGGCCR	1 cut(s)	408
AcsI	RAATTY	1 cut(s)	5
AfaI	GTAC	1 cut(s)	830
AfiI	CCNNNNNNNGG	5 cut(s)	180, 432, 464, 492, 685
AgeI	ACCGGT	1 cut(s)	681
AgsI	TTSAA	2 cut(s)	70, 554
AluBI	AGCT	6 cut(s)	116, 335, 441, 523, 802, 824
AluI	AGCT	6 cut(s)	116, 335, 441, 523, 802, 824
Alw21I	GWGCWC	3 cut(s)	443, 627, 804
Alw26I	GTCTC	2 cut(s)	241, 302
AoxI	GGCC	4 cut(s)	354, 408, 452, 544
ApeKI	GCWGC	3 cut(s)	158, 520, 569
ApoI	RAATTY	1 cut(s)	5
AsiGI	ACCGGT	1 cut(s)	681
Asp700I	GAANNNNTTC	1 cut(s)	229
AspLEI	GCGC	2 cut(s)	245, 569
AspS9I	GGNCC	1 cut(s)	290
AsuC2I	CCSGG	1 cut(s)	182
AsuHPI	GGTGA	3 cut(s)	136, 190, 710
AvaII	GGWCC	1 cut(s)	290
BalI	TGGCCA	1 cut(s)	410
BanII	GRGCYC	2 cut(s)	443, 804
BbsI	GAAGAC	1 cut(s)	331
Bbv12I	GWGCWC	3 cut(s)	443, 627, 804
BbvI	GCAGC	3 cut(s)	170, 532, 556
BceAI	ACGGC	2 cut(s)	486, 596
BclI	TGATCA	2 cut(s)	49, 525
BcnI	CCSGG	1 cut(s)	182
BcoDI	GTCTC	2 cut(s)	241, 302
BfoI	RGCGCY	1 cut(s)	570
BisI	GCNGC	4 cut(s)	156, 159, 521, 570
BlsI	GCNGC	4 cut(s)	157, 160, 522, 571
BmcAI	AGTACT	1 cut(s)	830
Bme1390I	CCNGG	1 cut(s)	182
Bme18I	GGWCC	1 cut(s)	290
BmgT120I	GGNCC	1 cut(s)	290
BmrFI	CCNGG	1 cut(s)	182
BmsI	GCATC	1 cut(s)	408
BpiI	GAAGAC	1 cut(s)	331
BpuMI	CCSGG	1 cut(s)	182
BsaWI	WCCGGW	3 cut(s)	457, 681, 695
BsaXI	ACNNNNNCTCC	4 cut(s)	153, 183, 303, 333
Bsc4I	CCNNNNNNNGG	5 cut(s)	180, 432, 464, 492, 685
Bse118I	RCCGGY	2 cut(s)	485, 681
Bse1I	ACTGG	1 cut(s)	10
Bse3DI	GCAATG	1 cut(s)	270
BseGI	GGATG	2 cut(s)	359, 441
BseLI	CCNNNNNNNGG	5 cut(s)	180, 432, 464, 492, 685
BseMI	GCAATG	1 cut(s)	270
BseMII	CTCAG	1 cut(s)	816
BseNI	ACTGG	1 cut(s)	10
BseRI	GAGGAG	1 cut(s)	311
BseXI	GCAGC	3 cut(s)	170, 532, 556
BsgI	GTGCAG	1 cut(s)	312
Bsh1236I	CGCG	1 cut(s)	295
BshFI	GGCC	4 cut(s)	356, 410, 454, 546
BshTI	ACCGGT	1 cut(s)	681
BsiHKAI	GWGCWC	3 cut(s)	443, 627, 804
BsiSI	CCGG	8 cut(s)	181, 222, 240, 458, 486, 665, 682, 696
BslFI	GGGAC	3 cut(s)	4, 197, 283
BslI	CCNNNNNNNGG	5 cut(s)	180, 432, 464, 492, 685
BsmAI	GTCTC	2 cut(s)	241, 302
BsmBI	CGTCTC	1 cut(s)	302
BsmFI	GGGAC	3 cut(s)	4, 197, 283
BsnI	GGCC	4 cut(s)	356, 410, 454, 546
Bsp1286I	GDGCHC	3 cut(s)	443, 627, 804
Bsp143I	GATC	2 cut(s)	49, 525
BspACI	CCGC	5 cut(s)	92, 156, 293, 489, 630
BspANI	GGCC	4 cut(s)	356, 410, 454, 546
BspCNI	CTCAG	1 cut(s)	817
BspFNI	CGCG	1 cut(s)	295
BsrDI	GCAATG	1 cut(s)	270
BsrFI	RCCGGY	2 cut(s)	485, 681
BsrI	ACTGG	1 cut(s)	10
BssAI	RCCGGY	2 cut(s)	485, 681
BssMI	GATC	2 cut(s)	49, 525
Bst4CI	ACNGT	3 cut(s)	671, 727, 808
Bst6I	CTCTTC	1 cut(s)	383
BstAPI	GCANNNNNTGC	2 cut(s)	251, 661
BstC8I	GCNNGC	2 cut(s)	102, 487
BstDEI	CTNAG	2 cut(s)	112, 825
BstF5I	GGATG	2 cut(s)	359, 441
BstFNI	CGCG	1 cut(s)	295
BstH2I	RGCGCY	1 cut(s)	570
BstHHI	GCGC	2 cut(s)	245, 569
BstKTI	GATC	2 cut(s)	52, 528
BstMAI	GTCTC	2 cut(s)	241, 302
BstMBI	GATC	2 cut(s)	49, 525
BstMWI	GCNNNNNNNGC	7 cut(s)	227, 251, 260, 486, 529, 652, 661
BstNSI	RCATGY	1 cut(s)	100
BstSCI	CCNGG	1 cut(s)	180
BstUI	CGCG	1 cut(s)	295
BstV1I	GCAGC	3 cut(s)	170, 532, 556
BstV2I	GAAGAC	1 cut(s)	331
BsuRI	GGCC	4 cut(s)	356, 410, 454, 546
BtsCI	GGATG	2 cut(s)	359, 441
BtsI	GCAGTG	2 cut(s)	324, 579
BtsIMutI	CAGTG	3 cut(s)	324, 579, 804
Cac8I	GCNNGC	2 cut(s)	102, 487
CfoI	GCGC	2 cut(s)	245, 569
Cfr10I	RCCGGY	2 cut(s)	485, 681
Cfr13I	GGNCC	1 cut(s)	290
CpoI	CGGWCCG	1 cut(s)	290
CseI	GACGC	3 cut(s)	284, 382, 526
Csp6I	GTAC	1 cut(s)	829
CspAI	ACCGGT	1 cut(s)	681
CspI	CGGWCCG	1 cut(s)	290
CviAII	CATG	5 cut(s)	97, 135, 427, 529, 737
CviQI	GTAC	1 cut(s)	829
DdeI	CTNAG	2 cut(s)	112, 825
DpnI	GATC	2 cut(s)	51, 527
DpnII	GATC	2 cut(s)	49, 525
EaeI	YGGCCR	1 cut(s)	408
Eam1104I	CTCTTC	1 cut(s)	383
EarI	CTCTTC	1 cut(s)	383
Ecl136II	GAGCTC	2 cut(s)	441, 802
Eco24I	GRGCYC	2 cut(s)	443, 804
Eco47I	GGWCC	1 cut(s)	290
Eco53kI	GAGCTC	2 cut(s)	441, 802
EcoICRI	GAGCTC	2 cut(s)	441, 802
EcoRI	GAATTC	1 cut(s)	5
EcoT38I	GRGCYC	2 cut(s)	443, 804
Esp3I	CGTCTC	1 cut(s)	302
FaeI	CATG	5 cut(s)	100, 138, 430, 532, 740
FaqI	GGGAC	3 cut(s)	4, 197, 283
FatI	CATG	5 cut(s)	96, 134, 426, 528, 736
FbaI	TGATCA	2 cut(s)	49, 525
Fnu4HI	GCNGC	4 cut(s)	156, 159, 521, 570
FokI	GGATG	2 cut(s)	346, 448
FriOI	GRGCYC	2 cut(s)	443, 804
Fsp4HI	GCNGC	4 cut(s)	156, 159, 521, 570
GlaI	GCGC	2 cut(s)	244, 568
GluI	GCNGC	4 cut(s)	156, 159, 521, 570
HaeII	RGCGCY	1 cut(s)	570
HaeIII	GGCC	4 cut(s)	356, 410, 454, 546
HapII	CCGG	8 cut(s)	181, 222, 240, 458, 486, 665, 682, 696
HgaI	GACGC	3 cut(s)	284, 382, 526
HhaI	GCGC	2 cut(s)	245, 569
Hin1II	CATG	5 cut(s)	100, 138, 430, 532, 740
Hin6I	GCGC	2 cut(s)	243, 567
HinP1I	GCGC	2 cut(s)	243, 567
HinfI	GANTC	5 cut(s)	17, 44, 225, 271, 763
HpaII	CCGG	8 cut(s)	181, 222, 240, 458, 486, 665, 682, 696
HphI	GGTGA	3 cut(s)	136, 190, 710
Hpy166II	GTNNAC	3 cut(s)	43, 579, 811
Hpy188I	TCNGA	4 cut(s)	16, 49, 280, 290
Hpy188III	TCNNGA	1 cut(s)	433
Hpy8I	GTNNAC	3 cut(s)	43, 579, 811
Hpy99I	CGWCG	2 cut(s)	398, 520
HpyCH4III	ACNGT	3 cut(s)	671, 727, 808
HpyCH4IV	ACGT	1 cut(s)	561
HpyCH4V	TGCA	1 cut(s)	329
HpyF10VI	GCNNNNNNNGC	7 cut(s)	227, 251, 260, 486, 529, 652, 661
HpyF3I	CTNAG	2 cut(s)	112, 825
HpySE526I	ACGT	1 cut(s)	561
Hsp92II	CATG	5 cut(s)	100, 138, 430, 532, 740
HspAI	GCGC	2 cut(s)	243, 567
KroI	GCCGGC	1 cut(s)	485
KroNI	GCCGGC	1 cut(s)	487
Ksp22I	TGATCA	2 cut(s)	49, 525
Kzo9I	GATC	2 cut(s)	49, 525
Lsp1109I	GCAGC	3 cut(s)	170, 532, 556
LweI	GCATC	1 cut(s)	408
MaeII	ACGT	1 cut(s)	561
MaeIII	GTNAC	2 cut(s)	671, 698
MalI	GATC	2 cut(s)	51, 527
MboI	GATC	2 cut(s)	49, 525
MboII	GAAGA	3 cut(s)	67, 331, 370
MhlI	GDGCHC	3 cut(s)	443, 627, 804
MlsI	TGGCCA	1 cut(s)	410
MluCI	AATT	2 cut(s)	5, 748
MluNI	TGGCCA	1 cut(s)	410
MlyI	GAGTC	3 cut(s)	26, 38, 265
MmeI	TCCRAC	3 cut(s)	303, 446, 666
Mox20I	TGGCCA	1 cut(s)	410
MreI	CGCCGGCG	1 cut(s)	485
MroNI	GCCGGC	1 cut(s)	485
MroXI	GAANNNNTTC	1 cut(s)	229
MscI	TGGCCA	1 cut(s)	410
MseI	TTAA	2 cut(s)	744, 835
Msp20I	TGGCCA	1 cut(s)	410
MspA1I	CMGCKG	2 cut(s)	335, 523
MspI	CCGG	8 cut(s)	181, 222, 240, 458, 486, 665, 682, 696
MspR9I	CCNGG	1 cut(s)	182
MvnI	CGCG	1 cut(s)	295
MwoI	GCNNNNNNNGC	7 cut(s)	227, 251, 260, 486, 529, 652, 661
NaeI	GCCGGC	1 cut(s)	487
NciI	CCSGG	1 cut(s)	182
NdeII	GATC	2 cut(s)	49, 525
NgoMIV	GCCGGC	1 cut(s)	485
NlaIII	CATG	5 cut(s)	100, 138, 430, 532, 740
NmuCI	GTSAC	1 cut(s)	698
NspI	RCATGY	1 cut(s)	100
PdiI	GCCGGC	1 cut(s)	487
PdmI	GAANNNNTTC	1 cut(s)	229
PfeI	GAWTC	2 cut(s)	225, 763
PflFI	GACNNNGTC	1 cut(s)	294
PflMI	CCANNNNNTGG	2 cut(s)	432, 685
PfoI	TCCNGGA	1 cut(s)	180
PinAI	ACCGGT	1 cut(s)	681
PkrI	GCNGC	4 cut(s)	157, 160, 522, 571
PleI	GAGTC	3 cut(s)	25, 38, 265
PpsI	GAGTC	3 cut(s)	25, 38, 265
Psp124BI	GAGCTC	2 cut(s)	443, 804
Psp1406I	AACGTT	1 cut(s)	561
PspPI	GGNCC	1 cut(s)	290
PsyI	GACNNNGTC	1 cut(s)	294
PvuII	CAGCTG	2 cut(s)	335, 523
RsaI	GTAC	1 cut(s)	830
RsaNI	GTAC	1 cut(s)	829
Rsr2I	CGGWCCG	1 cut(s)	290
RsrII	CGGWCCG	1 cut(s)	290
SacI	GAGCTC	2 cut(s)	443, 804
SaqAI	TTAA	2 cut(s)	744, 835
SatI	GCNGC	4 cut(s)	156, 159, 521, 570
Sau3AI	GATC	2 cut(s)	49, 525
Sau96I	GGNCC	1 cut(s)	290
ScaI	AGTACT	1 cut(s)	830
SchI	GAGTC	3 cut(s)	26, 38, 265
ScrFI	CCNGG	1 cut(s)	182
SduI	GDGCHC	3 cut(s)	443, 627, 804
SfaNI	GCATC	1 cut(s)	408
SgrAI	CRCCGGYG	1 cut(s)	485
SinI	GGWCC	1 cut(s)	290
Sse9I	AATT	2 cut(s)	5, 748
SsiI	CCGC	5 cut(s)	92, 156, 293, 489, 630
SstI	GAGCTC	2 cut(s)	443, 804
StyD4I	CCNGG	1 cut(s)	180
TaaI	ACNGT	3 cut(s)	671, 727, 808
TaiI	ACGT	1 cut(s)	564
TaqI	TCGA	1 cut(s)	722
TasI	AATT	2 cut(s)	5, 748
TatI	WGTACW	1 cut(s)	828
TauI	GCSGC	1 cut(s)	158
TfiI	GAWTC	2 cut(s)	225, 763
Tru1I	TTAA	2 cut(s)	744, 835
Tru9I	TTAA	2 cut(s)	744, 835
TscAI	CASTG	3 cut(s)	331, 586, 811
TseFI	GTSAC	1 cut(s)	698
TseI	GCWGC	3 cut(s)	158, 520, 569
Tsp45I	GTSAC	1 cut(s)	698
TspRI	CASTG	3 cut(s)	331, 586, 811
Tth111I	GACNNNGTC	1 cut(s)	294
Van91I	CCANNNNNTGG	2 cut(s)	432, 685
VpaK11BI	GGWCC	1 cut(s)	290
XapI	RAATTY	1 cut(s)	5
XceI	RCATGY	1 cut(s)	100
XcmI	CCANNNNNNNNNTGG	1 cut(s)	429
XmnI	GAANNNNTTC	1 cut(s)	229
ZrmI	AGTACT	1 cut(s)	830

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.