Rw2G036030

high affinity nitrate transporter

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
59126981 .. 59130553
3573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G036030.1

Sequence Viewer

Length: 1398 bp
ATGGAATACGATTCCCAGTCCCCAAAGTTTGCTCTGCGCGTGGACTCTGATCACAAGGCAACAGAGTTCAGAATCTTCTCCATAGACAAACCTCACATGCGAGCTTTTCACTTGGCCTGGTTCTCATACTTCTCATGCTTCCTCACCACTTTTGCCGCAGCACCTCTACTCCCCATAATCCGGGACAACCTCAACCTCACGACCACCGACATCGGCAAAGCCGGAATCGCTTCGGTCTCCGGCGCAGTCTTTGCCCGTATAGCCATGGGAACTCTTTCCGACTTATTCGGACCGCGCCTCGCCTCTGCCTCACTCCTACTCCTCACTGCACCAGCTGTCTTCTTGTTCTCAATGGCCTCCTCTATGTTTTCGCCTCCGGTGGTCGGCACAGCAAATGGCTTTGCAGGAGGTTGGGGGAACTTCGGTGGTGGAGCGACACAGCTGATCATGCCACTTGTGTTTGGCTTCATTCAACATAACGTTGGTGCTGCCAAGTTCACTGCTTGGCGAATAGCGTTTCAAATCCCTGCCGTGTTTCAGATGCTCTCCGCAATTGCAATCTTGCTTTTCGGGCAGGACATGACGGACGGTAACTTCCACCGGTTGGAGAAGTCAGGTGACAAACCGAAAGACAAGTTCTCGAATGTTTTCTGGCACGGGCTCACTGTGGATAATATCATAGCTGAGTACTTTTACGACAGATTCAATCTCAAGCTTCACACTGCAGGGATGATAGCGGCGACTTTCGGGTTGGCCAATATTGTTTCTAGACCGACAGGAGGGGTTTTATCGGATTTGATGGCGGGGAGGTTTGGGATGAGGGGGAGGCTGTGGACTTTGTGGGTGGTGCAAACTTTGGGGGGTGTGTTCTGTGTGATTCTTGGAAGAGTTGGTTCTTTGAAGGCTTCCATTGGTGTCATGATTTTGTTCTCCTTGTGTTGCCAAAGTGCTTGTGGGCTTACATTTGGAGTGGTTCCTTTTGTTTCCAGAAGTTACTATCTGGATCCGCCCCTAATAGGGGGTGGTGGAAGCTTGGGTGCAGTTATGACCCAACTTATTTTCTTCAAAGGATCCGAGTATTCGAAAGAAATAGGGCTTACTCTAATGGGGGTCATGATCATATGTTGCACTCTCCCATTGACGCTAATATATTTCCCGCAATGGGGTGGAATGTTGAGTGCTCCATCATCTATAAACACCGGTACTGAAGCGGAGTACTACATGTCCGAATGGACTTCAGTGGAGAAGGAGAAAGGTTTTCATCGCGCAAGTGTGAAATTTGCTGAGAACAGCAGAAGCGAAAGGGGAAAATCGGACTCTTTAACCAGGACCTCTGATGATATTCCACCCACAGGCAACAGTACATGTTTATCTAGCTTGTACTACATCAACTGTTGA

Protein Analysis

465

Amino Acids

50.48

Weight (kDa)

8.65

Isoelectric Point (pI)

36.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 604
AccII CGCG 3 cut(s) 39, 295, 1266
AciI CCGC 8 cut(s) 156, 293, 549, 737, 803, 1007, 1157, 1211
AclI AACGTT 1 cut(s) 480
AclWI GGATC 4 cut(s) 998, 1011, 1065, 1078
AcoI YGGCCR 1 cut(s) 753
AcsI RAATTY 1 cut(s) 1277
AcuI CTGAAG 2 cut(s) 1221, 1227
AfaI GTAC 5 cut(s) 689, 1204, 1217, 1363, 1382
AflIII ACRYGT 2 cut(s) 1221, 1364
AgeI ACCGGT 2 cut(s) 600, 1199
AgsI TTSAA 5 cut(s) 473, 521, 706, 901, 1066
AjnI CCWGG 2 cut(s) 116, 1325
AluBI AGCT 7 cut(s) 104, 335, 442, 683, 715, 1032, 1377
AluI AGCT 7 cut(s) 104, 335, 442, 683, 715, 1032, 1377
Alw21I GWGCWC 1 cut(s) 1183
Alw26I GTCTC 1 cut(s) 241
AlwI GGATC 4 cut(s) 998, 1011, 1065, 1078
AoxI GGCC 3 cut(s) 114, 354, 753
ApeKI GCWGC 2 cut(s) 158, 488
ApoI RAATTY 1 cut(s) 1277
AsiGI ACCGGT 2 cut(s) 600, 1199
Asp700I GAANNNNTTC 3 cut(s) 229, 274, 647
AspLEI GCGC 4 cut(s) 39, 245, 297, 1268
AspS9I GGNCC 2 cut(s) 290, 1329
AsuC2I CCSGG 1 cut(s) 182
AsuHPI GGTGA 2 cut(s) 136, 629
AsuII TTCGAA 1 cut(s) 1082
AvaII GGWCC 2 cut(s) 290, 1329
BalI TGGCCA 1 cut(s) 755
BamHI GGATCC 2 cut(s) 1003, 1070
BanII GRGCYC 1 cut(s) 663
BbsI GAAGAC 1 cut(s) 331
Bbv12I GWGCWC 1 cut(s) 1183
BbvI GCAGC 2 cut(s) 170, 475
BccI CCATC 2 cut(s) 793, 1192
BceAI ACGGC 1 cut(s) 515
BciT130I CCWGG 2 cut(s) 118, 1327
BclI TGATCA 3 cut(s) 49, 444, 1116
BcnI CCSGG 1 cut(s) 182
BcoDI GTCTC 1 cut(s) 241
BfaI CTAG 2 cut(s) 768, 1374
BfmI CTRYAG 1 cut(s) 723
BisI GCNGC 4 cut(s) 156, 159, 489, 738
BlsI GCNGC 4 cut(s) 157, 160, 490, 739
BmcAI AGTACT 2 cut(s) 689, 1217
Bme1390I CCNGG 3 cut(s) 118, 182, 1327
Bme18I GGWCC 2 cut(s) 290, 1329
BmgT120I GGNCC 2 cut(s) 290, 1329
BmiI GGNNCC 3 cut(s) 975, 1005, 1072
BmrFI CCNGG 3 cut(s) 118, 182, 1327
BmrI ACTGGG 1 cut(s) 10
BmsI GCATC 1 cut(s) 531
BmuI ACTGGG 1 cut(s) 10
BpiI GAAGAC 1 cut(s) 331
Bpu14I TTCGAA 1 cut(s) 1082
BpuEI CTTGAG 1 cut(s) 695
BpuMI CCSGG 1 cut(s) 182
BsaI GGTCTC 1 cut(s) 241
BsaJI CCNNGG 1 cut(s) 264
BsaWI WCCGGW 3 cut(s) 376, 600, 1199
BsaXI ACNNNNNCTCC 4 cut(s) 153, 183, 303, 333
Bse118I RCCGGY 2 cut(s) 600, 1199
Bse1I ACTGG 1 cut(s) 16
Bse3DI GCAATG 1 cut(s) 1166
BseBI CCWGG 2 cut(s) 118, 1327
BseDI CCNNGG 1 cut(s) 264
BseGI GGATG 2 cut(s) 735, 822
BseMI GCAATG 1 cut(s) 1166
BseMII CTCAG 2 cut(s) 675, 1275
BseNI ACTGG 1 cut(s) 16
BseRI GAGGAG 2 cut(s) 311, 349
BseXI GCAGC 2 cut(s) 170, 475
BsgI GTGCAG 2 cut(s) 312, 1059
Bsh1236I CGCG 3 cut(s) 39, 295, 1266
BshFI GGCC 3 cut(s) 116, 356, 755
BshTI ACCGGT 2 cut(s) 600, 1199
BsiHKAI GWGCWC 1 cut(s) 1183
BsiSI CCGG 6 cut(s) 181, 222, 240, 377, 601, 1200
BslFI GGGAC 2 cut(s) 4, 197
BsmAI GTCTC 1 cut(s) 241
BsmFI GGGAC 2 cut(s) 4, 197
BsnI GGCC 3 cut(s) 116, 356, 755
Bso31I GGTCTC 1 cut(s) 241
Bsp119I TTCGAA 1 cut(s) 1082
Bsp1286I GDGCHC 2 cut(s) 663, 1183
Bsp143I GATC 5 cut(s) 49, 444, 1003, 1070, 1116
Bsp19I CCATGG 1 cut(s) 264
BspACI CCGC 8 cut(s) 156, 293, 549, 737, 803, 1007, 1157, 1211
BspANI GGCC 3 cut(s) 116, 356, 755
BspCNI CTCAG 2 cut(s) 676, 1276
BspFNI CGCG 3 cut(s) 39, 295, 1266
BspHI TCATGA 2 cut(s) 918, 1113
BspLI GGNNCC 3 cut(s) 975, 1005, 1072
BspMAI CTGCAG 1 cut(s) 727
BspPI GGATC 4 cut(s) 998, 1011, 1065, 1078
BspT104I TTCGAA 1 cut(s) 1082
BspTNI GGTCTC 1 cut(s) 241
BsrDI GCAATG 1 cut(s) 1166
BsrFI RCCGGY 2 cut(s) 600, 1199
BsrI ACTGG 1 cut(s) 16
BssAI RCCGGY 2 cut(s) 600, 1199
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 5 cut(s) 49, 444, 1003, 1070, 1116
BssT1I CCWWGG 1 cut(s) 264
Bst2UI CCWGG 2 cut(s) 118, 1327
Bst4CI ACNGT 4 cut(s) 590, 667, 1361, 1394
Bst6I CTCTTC 1 cut(s) 880
BstAPI GCANNNNNTGC 1 cut(s) 251
BstBI TTCGAA 1 cut(s) 1082
BstC8I GCNNGC 1 cut(s) 102
BstDEI CTNAG 2 cut(s) 684, 1284
BstDSI CCRYGG 1 cut(s) 264
BstF5I GGATG 2 cut(s) 735, 822
BstFNI CGCG 3 cut(s) 39, 295, 1266
BstHHI GCGC 4 cut(s) 39, 245, 297, 1268
BstKTI GATC 5 cut(s) 52, 447, 1006, 1073, 1119
BstMAI GTCTC 1 cut(s) 241
BstMBI GATC 5 cut(s) 49, 444, 1003, 1070, 1116
BstMWI GCNNNNNNNGC 5 cut(s) 227, 251, 260, 448, 571
BstNI CCWGG 2 cut(s) 118, 1327
BstNSI RCATGY 3 cut(s) 100, 1225, 1368
BstSCI CCNGG 3 cut(s) 116, 180, 1325
BstSFI CTRYAG 1 cut(s) 723
BstUI CGCG 3 cut(s) 39, 295, 1266
BstV1I GCAGC 2 cut(s) 170, 475
BstV2I GAAGAC 1 cut(s) 331
BstX2I RGATCY 2 cut(s) 1003, 1070
BstYI RGATCY 2 cut(s) 1003, 1070
BsuRI GGCC 3 cut(s) 116, 356, 755
BtgI CCRYGG 1 cut(s) 264
BtgZI GCGATG 1 cut(s) 1247
BtsCI GGATG 2 cut(s) 735, 822
BtsI GCAGTG 3 cut(s) 324, 498, 720
BtsIMutI CAGTG 5 cut(s) 324, 498, 663, 720, 1245
Cac8I GCNNGC 1 cut(s) 102
CciI TCATGA 2 cut(s) 918, 1113
CfoI GCGC 4 cut(s) 39, 245, 297, 1268
Cfr10I RCCGGY 2 cut(s) 600, 1199
Cfr13I GGNCC 2 cut(s) 290, 1329
CpoI CGGWCCG 1 cut(s) 290
CseI GACGC 1 cut(s) 1150
Csp6I GTAC 5 cut(s) 688, 1203, 1216, 1362, 1381
CspAI ACCGGT 2 cut(s) 600, 1199
CspI CGGWCCG 1 cut(s) 290
CviAII CATG 9 cut(s) 97, 135, 265, 448, 580, 919, 1114, 1222, 1365
CviQI GTAC 5 cut(s) 688, 1203, 1216, 1362, 1381
DdeI CTNAG 2 cut(s) 684, 1284
DpnI GATC 5 cut(s) 51, 446, 1005, 1072, 1118
DpnII GATC 5 cut(s) 49, 444, 1003, 1070, 1116
EaeI YGGCCR 1 cut(s) 753
Eam1104I CTCTTC 1 cut(s) 880
EarI CTCTTC 1 cut(s) 880
EciI GGCGGA 1 cut(s) 996
Eco130I CCWWGG 1 cut(s) 264
Eco24I GRGCYC 1 cut(s) 663
Eco31I GGTCTC 1 cut(s) 241
Eco47I GGWCC 2 cut(s) 290, 1329
Eco57I CTGAAG 2 cut(s) 1221, 1227
EcoO109I RGGNCCY 1 cut(s) 1329
EcoRII CCWGG 2 cut(s) 116, 1325
EcoT14I CCWWGG 1 cut(s) 264
EcoT38I GRGCYC 1 cut(s) 663
ErhI CCWWGG 1 cut(s) 264
FaeI CATG 9 cut(s) 100, 138, 268, 451, 583, 922, 1117, 1225, 1368
FaqI GGGAC 2 cut(s) 4, 197
FatI CATG 9 cut(s) 96, 134, 264, 447, 579, 918, 1113, 1221, 1364
FauI CCCGC 2 cut(s) 796, 1164
FauNDI CATATG 1 cut(s) 1121
FbaI TGATCA 3 cut(s) 49, 444, 1116
Fnu4HI GCNGC 4 cut(s) 156, 159, 489, 738
FokI GGATG 2 cut(s) 742, 829
FriOI GRGCYC 1 cut(s) 663
Fsp4HI GCNGC 4 cut(s) 156, 159, 489, 738
FspBI CTAG 2 cut(s) 768, 1374
GlaI GCGC 4 cut(s) 38, 244, 296, 1267
GluI GCNGC 4 cut(s) 156, 159, 489, 738
HaeIII GGCC 3 cut(s) 116, 356, 755
HapII CCGG 6 cut(s) 181, 222, 240, 377, 601, 1200
HgaI GACGC 1 cut(s) 1150
HhaI GCGC 4 cut(s) 39, 245, 297, 1268
Hin1II CATG 9 cut(s) 100, 138, 268, 451, 583, 922, 1117, 1225, 1368
Hin6I GCGC 4 cut(s) 37, 243, 295, 1266
HinP1I GCGC 4 cut(s) 37, 243, 295, 1266
HindIII AAGCTT 2 cut(s) 713, 1030
HinfI GANTC 7 cut(s) 11, 44, 72, 225, 702, 877, 1316
HpaII CCGG 6 cut(s) 181, 222, 240, 377, 601, 1200
HphI GGTGA 2 cut(s) 136, 629
Hpy166II GTNNAC 3 cut(s) 43, 498, 834
Hpy188III TCNNGA 7 cut(s) 199, 640, 768, 919, 987, 1001, 1114
Hpy8I GTNNAC 3 cut(s) 43, 498, 834
HpyAV CCTTC 2 cut(s) 895, 1240
HpyCH4III ACNGT 4 cut(s) 590, 667, 1361, 1394
HpyCH4IV ACGT 1 cut(s) 480
HpyCH4V TGCA 7 cut(s) 329, 404, 557, 725, 850, 1040, 1128
HpyF10VI GCNNNNNNNGC 5 cut(s) 227, 251, 260, 448, 571
HpyF3I CTNAG 2 cut(s) 684, 1284
HpySE526I ACGT 1 cut(s) 480
Hsp92II CATG 9 cut(s) 100, 138, 268, 451, 583, 922, 1117, 1225, 1368
HspAI GCGC 4 cut(s) 37, 243, 295, 1266
Ksp22I TGATCA 3 cut(s) 49, 444, 1116
Kzo9I GATC 5 cut(s) 49, 444, 1003, 1070, 1116
LmnI GCTCC 2 cut(s) 431, 1186
Lsp1109I GCAGC 2 cut(s) 170, 475
LweI GCATC 1 cut(s) 531
MaeI CTAG 2 cut(s) 768, 1374
MaeII ACGT 1 cut(s) 480
MaeIII GTNAC 3 cut(s) 590, 617, 992
MalI GATC 5 cut(s) 51, 446, 1005, 1072, 1118
MboI GATC 5 cut(s) 49, 444, 1003, 1070, 1116
MboII GAAGA 4 cut(s) 67, 331, 897, 1054
MfeI CAATTG 1 cut(s) 552
MflI RGATCY 2 cut(s) 1003, 1070
MhlI GDGCHC 2 cut(s) 663, 1183
MlsI TGGCCA 1 cut(s) 755
MluCI AATT 2 cut(s) 552, 1277
MluNI TGGCCA 1 cut(s) 755
MlyI GAGTC 2 cut(s) 38, 1310
MmeI TCCRAC 2 cut(s) 303, 585
Mox20I TGGCCA 1 cut(s) 755
MroXI GAANNNNTTC 3 cut(s) 229, 274, 647
MscI TGGCCA 1 cut(s) 755
MseI TTAA 1 cut(s) 1322
Msp20I TGGCCA 1 cut(s) 755
MspA1I CMGCKG 2 cut(s) 335, 442
MspI CCGG 6 cut(s) 181, 222, 240, 377, 601, 1200
MspR9I CCNGG 3 cut(s) 118, 182, 1327
MunI CAATTG 1 cut(s) 552
MvaI CCWGG 2 cut(s) 118, 1327
MvnI CGCG 3 cut(s) 39, 295, 1266
MwoI GCNNNNNNNGC 5 cut(s) 227, 251, 260, 448, 571
NciI CCSGG 1 cut(s) 182
NcoI CCATGG 1 cut(s) 264
NdeI CATATG 1 cut(s) 1121
NdeII GATC 5 cut(s) 49, 444, 1003, 1070, 1116
NlaIII CATG 9 cut(s) 100, 138, 268, 451, 583, 922, 1117, 1225, 1368
NlaIV GGNNCC 3 cut(s) 975, 1005, 1072
NmuCI GTSAC 1 cut(s) 617
NspI RCATGY 3 cut(s) 100, 1225, 1368
NspV TTCGAA 1 cut(s) 1082
PagI TCATGA 2 cut(s) 918, 1113
PciI ACATGT 2 cut(s) 1221, 1364
PdmI GAANNNNTTC 3 cut(s) 229, 274, 647
PfeI GAWTC 5 cut(s) 11, 72, 225, 702, 877
PflMI CCANNNNNTGG 1 cut(s) 604
PfoI TCCNGGA 1 cut(s) 180
PinAI ACCGGT 2 cut(s) 600, 1199
PkrI GCNGC 4 cut(s) 157, 160, 490, 739
PleI GAGTC 2 cut(s) 38, 1310
PpsI GAGTC 2 cut(s) 38, 1310
PpuMI RGGWCCY 1 cut(s) 1329
PscI ACATGT 2 cut(s) 1221, 1364
Psp1406I AACGTT 1 cut(s) 480
Psp5II RGGWCCY 1 cut(s) 1329
Psp6I CCWGG 2 cut(s) 116, 1325
PspGI CCWGG 2 cut(s) 116, 1325
PspN4I GGNNCC 3 cut(s) 975, 1005, 1072
PspPI GGNCC 2 cut(s) 290, 1329
PspPPI RGGWCCY 1 cut(s) 1329
PstI CTGCAG 1 cut(s) 727
PsuI RGATCY 2 cut(s) 1003, 1070
PvuII CAGCTG 2 cut(s) 335, 442
RsaI GTAC 5 cut(s) 689, 1204, 1217, 1363, 1382
RsaNI GTAC 5 cut(s) 688, 1203, 1216, 1362, 1381
Rsr2I CGGWCCG 1 cut(s) 290
RsrII CGGWCCG 1 cut(s) 290
SaqAI TTAA 1 cut(s) 1322
SatI GCNGC 4 cut(s) 156, 159, 489, 738
Sau3AI GATC 5 cut(s) 49, 444, 1003, 1070, 1116
Sau96I GGNCC 2 cut(s) 290, 1329
ScaI AGTACT 2 cut(s) 689, 1217
SchI GAGTC 2 cut(s) 38, 1310
ScrFI CCNGG 3 cut(s) 118, 182, 1327
SduI GDGCHC 2 cut(s) 663, 1183
SfaNI GCATC 1 cut(s) 531
SfcI CTRYAG 1 cut(s) 723
SfuI TTCGAA 1 cut(s) 1082
SinI GGWCC 2 cut(s) 290, 1329
SmlI CTYRAG 1 cut(s) 710
SmoI CTYRAG 1 cut(s) 710
Sse9I AATT 2 cut(s) 552, 1277
SsiI CCGC 8 cut(s) 156, 293, 549, 737, 803, 1007, 1157, 1211
SspI AATATT 1 cut(s) 760
SspMI CTAG 2 cut(s) 768, 1374
StyD4I CCNGG 3 cut(s) 116, 180, 1325
StyI CCWWGG 1 cut(s) 264
TaaI ACNGT 4 cut(s) 590, 667, 1361, 1394
TaiI ACGT 1 cut(s) 483
TaqI TCGA 2 cut(s) 641, 1082
TaqII GACCGA 2 cut(s) 223, 787
TasI AATT 2 cut(s) 552, 1277
TatI WGTACW 4 cut(s) 687, 1215, 1361, 1380
TauI GCSGC 2 cut(s) 158, 740
TfiI GAWTC 5 cut(s) 11, 72, 225, 702, 877
Tru1I TTAA 1 cut(s) 1322
Tru9I TTAA 1 cut(s) 1322
TscAI CASTG 5 cut(s) 331, 505, 670, 727, 1245
TseFI GTSAC 1 cut(s) 617
TseI GCWGC 2 cut(s) 158, 488
Tsp45I GTSAC 1 cut(s) 617
TspDTI ATGAA 2 cut(s) 457, 1250
TspGWI ACGGA 1 cut(s) 599
TspRI CASTG 5 cut(s) 331, 505, 670, 727, 1245
Van91I CCANNNNNTGG 1 cut(s) 604
VpaK11BI GGWCC 2 cut(s) 290, 1329
XapI RAATTY 1 cut(s) 1277
XbaI TCTAGA 1 cut(s) 767
XceI RCATGY 3 cut(s) 100, 1225, 1368
XcmI CCANNNNNNNNNTGG 1 cut(s) 950
XmnI GAANNNNTTC 3 cut(s) 229, 274, 647
XspI CTAG 2 cut(s) 768, 1374
ZrmI AGTACT 2 cut(s) 689, 1217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.